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Search of human proteins with 23308507
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23308507 hypothetical protein LOC120939 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23308507 hypothetical protein LOC120939 [Homo sapiens] 348 9e-97
gi|30425506 transmembrane protein 52 [Homo sapiens] 77 5e-15
gi|169162161 PREDICTED: similar to EGFR-coamplified and overexpr... 34 0.049
gi|113411383 PREDICTED: similar to EGFR-coamplified and overexpr... 34 0.049
gi|239755172 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo ... 33 0.11
gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo ... 33 0.11
gi|46409276 transmembrane protein 207 [Homo sapiens] 33 0.11
gi|106507239 EGFR-coamplified and overexpressed protein [Homo sa... 33 0.14
gi|211059429 synaptotagmin II [Homo sapiens] 32 0.32
gi|31543670 synaptotagmin II [Homo sapiens] 32 0.32
gi|45504382 DnaJ (Hsp40) homolog, subfamily C, member 5 [Homo sa... 30 0.71
gi|116812586 leucine zipper protein 5 [Homo sapiens] 30 0.92
gi|96975038 coiled-coil domain containing 100 [Homo sapiens] 30 0.92
gi|169212012 PREDICTED: keratin-associated protein 9-2-like 1-li... 29 1.6
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 29 1.6
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 29 1.6
gi|153218552 keratin associated protein 9.8 [Homo sapiens] 29 1.6
gi|13994368 keratin associated protein 9.3 [Homo sapiens] 29 1.6
gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens] 29 2.1
gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens] 29 2.1
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens] 29 2.1
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens] 29 2.1
gi|169212028 PREDICTED: keratin-associated protein 9-2-like 2-li... 28 2.7
gi|21265052 ADAM metallopeptidase with thrombospondin type 1 mot... 28 2.7
gi|110611167 ADAM metallopeptidase with thrombospondin type 1 mo... 28 2.7
gi|23503229 WW domain binding protein 1 [Homo sapiens] 28 2.7
gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens] 28 3.5
gi|21389623 prominin 2 [Homo sapiens] 28 3.5
gi|51972258 ets variant 3-like [Homo sapiens] 28 3.5
>gi|23308507 hypothetical protein LOC120939 [Homo sapiens]
Length = 163
Score = 348 bits (894), Expect = 9e-97
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MSWRPQPCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGG 60
MSWRPQPCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGG
Sbjct: 1 MSWRPQPCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGG 60
Query: 61 PPPCEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEE 120
PPPCEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEE
Sbjct: 61 PPPCEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEE 120
Query: 121 ALHMSRFTVAMCGQKAPDLPPVPEEKQLPPTEKESTRIVDSWN 163
ALHMSRFTVAMCGQKAPDLPPVPEEKQLPPTEKESTRIVDSWN
Sbjct: 121 ALHMSRFTVAMCGQKAPDLPPVPEEKQLPPTEKESTRIVDSWN 163
>gi|30425506 transmembrane protein 52 [Homo sapiens]
Length = 209
Score = 77.4 bits (189), Expect = 5e-15
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 19 WVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGGPP---PCEVTVIAFDHDS 75
W LW++ L+++ LLLLCG+T+ C R CCL +Q + PP PC+V VI D DS
Sbjct: 50 WSSLWHVGLILLAVLLLLLCGVTAGCVRFCCLRKQAQAQPHLPPARQPCDVAVIPMDSDS 109
Query: 76 TLQSTITSLQSVFGPAARRILAVAHSHSSLGQLPSSLDTL------PGYEEALHM----- 124
+ ST+TS SV P R L + L + +L P Y+EA+ M
Sbjct: 110 PVHSTVTSYSSVQYPLGMR-LPLPFGELDLDSMAPPAYSLYTPEPPPSYDEAVKMAKPRE 168
Query: 125 -----SRFTVAMCGQKAPDLPPVPEEK----QLPP 150
S+ + G + PVP+E QLPP
Sbjct: 169 EGPALSQKPSPLLGASGLETTPVPQESGPNTQLPP 203
>gi|169162161 PREDICTED: similar to EGFR-coamplified and
overexpressed protein [Homo sapiens]
Length = 172
Score = 34.3 bits (77), Expect = 0.049
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 6 QPCCISSCC---LTTDWVHLWYIWLLVVIGALLLLCG 39
+ CC S CC L+ W LWY W L+++G +L CG
Sbjct: 43 EDCCGSRCCVRALSIQW--LWYFWFLLMMG-VLFCCG 76
>gi|113411383 PREDICTED: similar to EGFR-coamplified and
overexpressed protein [Homo sapiens]
Length = 172
Score = 34.3 bits (77), Expect = 0.049
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 6 QPCCISSCC---LTTDWVHLWYIWLLVVIGALLLLCG 39
+ CC S CC L+ W LWY W L+++G +L CG
Sbjct: 43 EDCCGSRCCVRALSIQW--LWYFWFLLMMG-VLFCCG 76
>gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 26 WLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGGPPP 63
W+ VV+G L+++ + L R CC+ G GPPP
Sbjct: 108 WISVVLGRLMMVASPSRLQIR-CCMGVSSTGATAGPPP 144
>gi|239749673 PREDICTED: hypothetical protein XP_002347141 [Homo
sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 26 WLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGGPPP 63
W+ VV+G L+++ + L R CC+ G GPPP
Sbjct: 138 WISVVLGRLMMVASPSRLQIR-CCMGVSSTGATAGPPP 174
>gi|239743940 PREDICTED: hypothetical protein XP_002342994 [Homo
sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.11
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 26 WLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDGGPPP 63
W+ VV+G L+++ + L R CC+ G GPPP
Sbjct: 138 WISVVLGRLMMVASPSRLQIR-CCMGVSSTGATAGPPP 174
>gi|46409276 transmembrane protein 207 [Homo sapiens]
Length = 146
Score = 33.1 bits (74), Expect = 0.11
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 7 PCCISSCCLTTDWVHL--WYIW-LLVVIGALLLLCGLTSLCFRC 47
PC C+ + H WYIW LL+++ LLCG LC +C
Sbjct: 32 PCEEDEMCVNYNDQHPNGWYIWILLLLVLVAALLCGAVVLCLQC 75
>gi|106507239 EGFR-coamplified and overexpressed protein [Homo
sapiens]
Length = 172
Score = 32.7 bits (73), Expect = 0.14
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 6 QPCCISSCCLTTDWVH-LWYIWLLVVIGALLLLCG 39
+ CC S CC+ + LWY W L+++G +L CG
Sbjct: 43 EDCCGSRCCVRALSIQRLWYFWFLLMMG-VLFCCG 76
>gi|211059429 synaptotagmin II [Homo sapiens]
Length = 419
Score = 31.6 bits (70), Expect = 0.32
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 23 WYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDG 59
W + + V+ LLLL +C +CCC ++ E G
Sbjct: 63 WALIAIAVVAGLLLLTCCFCICKKCCCKKKKNKKEKG 99
>gi|31543670 synaptotagmin II [Homo sapiens]
Length = 419
Score = 31.6 bits (70), Expect = 0.32
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 23 WYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGEDG 59
W + + V+ LLLL +C +CCC ++ E G
Sbjct: 63 WALIAIAVVAGLLLLTCCFCICKKCCCKKKKNKKEKG 99
>gi|45504382 DnaJ (Hsp40) homolog, subfamily C, member 5 [Homo
sapiens]
Length = 198
Score = 30.4 bits (67), Expect = 0.71
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 33 ALLLLCGLTSLCFRCCCL 50
AL + CGL + C+ CCCL
Sbjct: 108 ALFVFCGLLTCCYCCCCL 125
>gi|116812586 leucine zipper protein 5 [Homo sapiens]
Length = 1143
Score = 30.0 bits (66), Expect = 0.92
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 91 AARRILAVAHSHSSLGQLPSSLDTLPGYEEALHMSRFTVAMCGQKAPDLPPVPEEKQLPP 150
AARR AH H++ + + +H+ R + C Q+A PP EE++
Sbjct: 550 AARRFYQYAHEHTACTNIA----------KLIHVIRHCLNACIQRAVREPPEDEEEE-DG 598
Query: 151 TEKESTRIVD 160
EKE+ ++D
Sbjct: 599 REKENVTVLD 608
>gi|96975038 coiled-coil domain containing 100 [Homo sapiens]
Length = 986
Score = 30.0 bits (66), Expect = 0.92
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 131 MCGQKAPDLPPVPEEKQLPPTEKEST 156
+ G K+P + PVP Q PPT+ ++T
Sbjct: 375 LTGPKSPTVSPVPSHNQSPPTKDDAT 400
>gi|169212012 PREDICTED: keratin-associated protein 9-2-like
1-like [Homo sapiens]
Length = 169
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 7 PCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLS 51
PCC +CC TT W + C T C CC+S
Sbjct: 7 PCCQPTCCRTTCWK-----------PTTVTTCSSTPCCQPSCCVS 40
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 87 VFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEEALHMSRFTVAMCG-----QKAPDLPP 141
V+GP + + A ++ S+L LP +L+ + E+ F + G Q AP PP
Sbjct: 925 VYGP--QLLAAYPYNFSNLAALPVALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPAPP 982
Query: 142 VPEEKQLPP 150
P LPP
Sbjct: 983 TPPPPTLPP 991
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 87 VFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEEALHMSRFTVAMCG-----QKAPDLPP 141
V+GP + + A ++ S+L LP +L+ + E+ F + G Q AP PP
Sbjct: 925 VYGP--QLLAAYPYNFSNLAALPVALNMVLPDEKGAGALPFLPGVFGYAVNPQAAPPAPP 982
Query: 142 VPEEKQLPP 150
P LPP
Sbjct: 983 TPPPPTLPP 991
>gi|153218552 keratin associated protein 9.8 [Homo sapiens]
Length = 159
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 7 PCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLS 51
PCC +CC TT W + C T C CC+S
Sbjct: 7 PCCQPTCCRTTCWK-----------PTTVTTCSSTPCCQPSCCVS 40
>gi|13994368 keratin associated protein 9.3 [Homo sapiens]
Length = 159
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 7 PCCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLS 51
PCC +CC TT W + C T C CC+S
Sbjct: 7 PCCQPTCCRTTCWQ-----------PTTVTTCSSTPCCQPSCCVS 40
>gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens]
Length = 818
Score = 28.9 bits (63), Expect = 2.1
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 104 SLGQLPSSLDTLPGYEEALHMSRFTVAMCGQKA-PDLPP---VPEEKQLPPTEKES 155
S G+ P LP E + H S QK+ PDLPP +PE KQL + ES
Sbjct: 70 SQGKAPEEQGLLPNGEPSQHSS------APQKSLPDLPPPKMIPERKQLAIPKTES 119
>gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 2.1
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 104 SLGQLPSSLDTLPGYEEALHMSRFTVAMCGQKA-PDLPP---VPEEKQLPPTEKES 155
S G+ P LP E + H S QK+ PDLPP +PE KQL + ES
Sbjct: 70 SQGKAPEEQGLLPNGEPSQHSS------APQKSLPDLPPPKMIPERKQLAIPKTES 119
>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
Length = 981
Score = 28.9 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 101 SHSSLGQLPSSLDTLPGYEEALHMSRF 127
S S LG + +DT+ YEE LH+ R+
Sbjct: 751 SSSELGMTFTGVDTMASYEEVLHLLRY 777
>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
Length = 971
Score = 28.9 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 101 SHSSLGQLPSSLDTLPGYEEALHMSRF 127
S S LG + +DT+ YEE LH+ R+
Sbjct: 741 SSSELGMTFTGVDTMASYEEVLHLLRY 767
>gi|169212028 PREDICTED: keratin-associated protein 9-2-like
2-like [Homo sapiens]
Length = 160
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 8 CCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLS 51
CC ++CC TT W ++ C T C CC+S
Sbjct: 13 CCRTTCCRTTCWQ-----------PTIVTTCSSTPCCQPSCCVS 45
>gi|21265052 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 2 preproprotein [Homo sapiens]
Length = 1223
Score = 28.5 bits (62), Expect = 2.7
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 46 RCCCLS--RQQNGEDGGPPPCEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHSHS 103
R CC+S ++ +G + GP P ++ F + P + + H H
Sbjct: 1087 RLCCVSCIKKASGPNPGPDPGPTSLPPFSTPGSPLPGPQDPADAAEPPGKPTGSEDHQHG 1146
Query: 104 SLGQLPSSLDT-LPGYEEALHMSRFTVAMCGQKAPDLP------------PVPEEKQLP 149
QLP +LDT PG + +P P PVPE+K P
Sbjct: 1147 RATQLPGALDTSSPGTQHPFAPETPIPGASWSISPTTPGGLPWGWTQTPTPVPEDKGQP 1205
>gi|110611167 ADAM metallopeptidase with thrombospondin type 1 motif,
14 isoform 1 preproprotein [Homo sapiens]
Length = 1226
Score = 28.5 bits (62), Expect = 2.7
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 46 RCCCLS--RQQNGEDGGPPPCEVTVIAFDHDSTLQSTITSLQSVFGPAARRILAVAHSHS 103
R CC+S ++ +G + GP P ++ F + P + + H H
Sbjct: 1090 RLCCVSCIKKASGPNPGPDPGPTSLPPFSTPGSPLPGPQDPADAAEPPGKPTGSEDHQHG 1149
Query: 104 SLGQLPSSLDT-LPGYEEALHMSRFTVAMCGQKAPDLP------------PVPEEKQLP 149
QLP +LDT PG + +P P PVPE+K P
Sbjct: 1150 RATQLPGALDTSSPGTQHPFAPETPIPGASWSISPTTPGGLPWGWTQTPTPVPEDKGQP 1208
>gi|23503229 WW domain binding protein 1 [Homo sapiens]
Length = 269
Score = 28.5 bits (62), Expect = 2.7
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 8 CCISSCCLTTDWVHLWYIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNGE 57
C + CC T + LW+ WLL + + F CCC R + +
Sbjct: 44 CGETGCC--TYYYELWWFWLLWTV----------LILFSCCCAFRHRRAK 81
>gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens]
Length = 862
Score = 28.1 bits (61), Expect = 3.5
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 53 QQNGEDGGP--PPCEVTVIAFD----HDSTLQSTITSLQSVFGPAARRILAVAHSHSSLG 106
+ G D P P C TV+ HD L S I L S P A + + H SL
Sbjct: 771 ESRGSDPKPENPACPWTVLPAGDLPTHDGYLPSNIDDLPSHEAPLADSLEELEPQHISLS 830
Query: 107 QLPSSLDTLPGYEEALHMSRFTVAMCGQK 135
PSS +LH F+ CG K
Sbjct: 831 VFPSS---------SLHPLTFS---CGDK 847
>gi|21389623 prominin 2 [Homo sapiens]
Length = 834
Score = 28.1 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 24 YIWLLVVIGALLLLCGLTSLCFRCCCLSRQQNG 56
Y+ V+ G LLL LCF CC R+ G
Sbjct: 106 YVVCAVIAGLYLLLVPTAGLCFCCCRCHRRCGG 138
>gi|51972258 ets variant 3-like [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 3.5
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 79 STITSLQSVFGPAARRILAVAHSHSSLGQLPSSLDTLPGYEEALHMSRFTVAMCGQKAPD 138
S++ L S GP R+ H S G+LP P L S +T P
Sbjct: 199 SSVYRLGSAPGPC--RLGLCCHLGSVQGELPGVASFTPPLPPPLP-SNWTCL----SGPF 251
Query: 139 LPPVPEEKQLP 149
LPP+P E+QLP
Sbjct: 252 LPPLPSEQQLP 262
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,204,798
Number of Sequences: 37866
Number of extensions: 373775
Number of successful extensions: 1868
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 113
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.