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Search of human proteins with 23111009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23111009 myogenic differentiation 1 [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23111009 myogenic differentiation 1 [Homo sapiens] 662 0.0
gi|156104906 myogenic factor 5 [Homo sapiens] 224 1e-58
gi|4505299 myogenic factor 6 [Homo sapiens] 130 2e-30
gi|18765727 myogenin [Homo sapiens] 128 8e-30
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 52 5e-07
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 52 5e-07
gi|38455396 neurogenin 1 [Homo sapiens] 52 9e-07
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 51 2e-06
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 51 2e-06
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 50 2e-06
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 50 2e-06
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 50 2e-06
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 50 2e-06
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 50 2e-06
gi|55743094 achaete-scute complex homolog 1 [Homo sapiens] 50 3e-06
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 49 5e-06
gi|4885075 atonal homolog 1 [Homo sapiens] 47 2e-05
gi|206597481 achaete-scute complex-like 4 [Homo sapiens] 47 3e-05
gi|4507741 twist [Homo sapiens] 47 3e-05
gi|17981708 twist homolog 2 [Homo sapiens] 45 1e-04
gi|21553337 atonal homolog 7 [Homo sapiens] 45 1e-04
gi|23097242 nephew of atonal 3 [Homo sapiens] 44 1e-04
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 44 1e-04
gi|148922889 scleraxis homolog B [Homo sapiens] 44 2e-04
gi|186972126 scleraxis homolog A [Homo sapiens] 44 2e-04
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 44 2e-04
gi|31077092 neurogenin 2 [Homo sapiens] 44 2e-04
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 43 4e-04
gi|68989258 neurogenin 3 [Homo sapiens] 42 6e-04
gi|116517330 factor in the germline alpha [Homo sapiens] 42 7e-04
>gi|23111009 myogenic differentiation 1 [Homo sapiens]
Length = 320
Score = 662 bits (1709), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MELLSPPLRDVDLTAPDGSLCSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPE 60
MELLSPPLRDVDLTAPDGSLCSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPE
Sbjct: 1 MELLSPPLRDVDLTAPDGSLCSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPE 60
Query: 61 EHSHFPAAVHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERR 120
EHSHFPAAVHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERR
Sbjct: 61 EHSHFPAAVHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERR 120
Query: 121 RLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYA 180
RLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYA
Sbjct: 121 RLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYA 180
Query: 181 PGPLPPGRGGEHYSGDSDASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRP 240
PGPLPPGRGGEHYSGDSDASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRP
Sbjct: 181 PGPLPPGRGGEHYSGDSDASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRP 240
Query: 241 GKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSESPPRRQEAAAPSEGESSGDPTQS 300
GKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSESPPRRQEAAAPSEGESSGDPTQS
Sbjct: 241 GKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSESPPRRQEAAAPSEGESSGDPTQS 300
Query: 301 PDAAPQCPAGANPNPIYQVL 320
PDAAPQCPAGANPNPIYQVL
Sbjct: 301 PDAAPQCPAGANPNPIYQVL 320
>gi|156104906 myogenic factor 5 [Homo sapiens]
Length = 255
Score = 224 bits (570), Expect = 1e-58
Identities = 132/276 (47%), Positives = 169/276 (61%), Gaps = 37/276 (13%)
Query: 21 CSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPEEHSHFPAAVHPAP--GARED 78
C F+ ++ FYD C SP+ F ++ PR+ GA H A G+ ED
Sbjct: 7 CQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGA--------------HKAELQGSDED 52
Query: 79 EHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSS 138
EHVRAP+GHHQAG CL+WACKACKRK+T DRRKAATMRERRRL KVN+AFETLKRCT++
Sbjct: 53 EHVRAPTGHHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTT 112
Query: 139 NPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSD 198
NPNQRLPKVEILRNAIRYIE LQ LLR+Q + PG S+
Sbjct: 113 NPNQRLPKVEILRNAIRYIESLQELLREQ------VENYYSLPG-----------QSCSE 155
Query: 199 ASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVER 258
+SP SNCSDGM + + P +R+ + ++ Y + + K+ ++SSLDCLS+IV+R
Sbjct: 156 PTSPTSNCSDGMPECNS-PVWSRKSSTFDSIYCPDVSNVYATDKN-SLSSLDCLSNIVDR 213
Query: 259 ISTESPAAPALLLADVPSESPPRRQEAAAPSEGESS 294
I+ S P L L D+ S SP ++ + G SS
Sbjct: 214 IT--SSEQPGLPLQDLASLSPVASTDSQPATPGASS 247
>gi|4505299 myogenic factor 6 [Homo sapiens]
Length = 242
Score = 130 bits (327), Expect = 2e-30
Identities = 85/197 (43%), Positives = 104/197 (52%), Gaps = 24/197 (12%)
Query: 78 DEHVRAPSG---HHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKR 134
+EHV AP G H G+CL+WACK CKRK+ DRRKAAT+RERRRL K+NEAFE LKR
Sbjct: 59 EEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKR 118
Query: 135 CTSSNPNQRLPKVEILRNAIRYIEGLQALLR--DQDAAPPGAAAAFYAPGPLPPGRGGEH 192
T +NPNQRLPKVEILR+AI YIE LQ LL DQ ++ P G
Sbjct: 119 RTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQENLEGAD 178
Query: 193 YSGDSDASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCL 252
+ + P + + + GA S+A SSL CL
Sbjct: 179 FLRTCSSQWPSVSDHSRGLVITAKEGGASI-------------------DSSASSSLRCL 219
Query: 253 SSIVERISTESPAAPAL 269
SSIV+ IS+E P +
Sbjct: 220 SSIVDSISSEERKLPCV 236
>gi|18765727 myogenin [Homo sapiens]
Length = 224
Score = 128 bits (321), Expect = 8e-30
Identities = 80/186 (43%), Positives = 105/186 (56%), Gaps = 20/186 (10%)
Query: 23 FATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPEEHSHFPAAVHP-APGAREDEHV 81
+ T+ FY +P RF++ + +H+ +P + + P APG ED+ +
Sbjct: 4 YETSPYFYQEP-------RFYDGENYLPVHLQGF-EPPGYERTELTLSPEAPGPLEDKGL 55
Query: 82 RAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSNPN 141
P H G+CL WACK CKRK+ + DRR+AAT+RE+RRL KVNEAFE LKR T NPN
Sbjct: 56 GTPE--HCPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEAFEALKRSTLLNPN 113
Query: 142 QRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDASS 201
QRLPKVEILR+AI+YIE LQALL + G GG S+ SS
Sbjct: 114 QRLPKVEILRSAIQYIERLQALLSSLNQEERDLRYR---------GGGGPQPGVPSECSS 164
Query: 202 PRSNCS 207
++CS
Sbjct: 165 HSASCS 170
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 52.4 bits (124), Expect = 5e-07
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 111 RKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQDA 169
R+AA +RERRR+ +N+AFE L+ + P +RL KV+ LR AI YI L L++
Sbjct: 165 RQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQADLP 224
Query: 170 APPGAAAAFYAPGPLPPGRGGEHYSGDSDAS 200
G A PG GG GDS S
Sbjct: 225 LRGGGAGGCGGPG------GGGRLGGDSPGS 249
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 52.4 bits (124), Expect = 5e-07
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQD 168
RR RER R VN AF L++ ++P +++L K E+LR A++YI L LLRDQ
Sbjct: 151 RRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQ- 209
Query: 169 AAPPGAAAAFYAPGPLPPG-----------RGGEHYSGDSDASSPRSNCSDGMMDYSGPP 217
AA A GP PPG G SG ++ RS + D G P
Sbjct: 210 -------AAALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAP-PADPDGSP 261
Query: 218 SGARR 222
GA R
Sbjct: 262 GGAAR 266
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 51.6 bits (122), Expect = 9e-07
Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 73 PGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETL 132
PGA++DE R + GR + + + RR A RER R+ +N A + L
Sbjct: 62 PGAQDDEQER----RRRRGRTRVRS--EALLHSLRRSRRVKANDRERNRMHNLNAALDAL 115
Query: 133 KRCTSSNPNQ-RLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAA---------AFYAPG 182
+ S P+ +L K+E LR A YI L LR D PG A PG
Sbjct: 116 RSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVPCLPG 175
Query: 183 PLPPGRGGEHYSGDSDASSPRSNCS 207
P P E + + A+SP S+ S
Sbjct: 176 PPSPASDAESWGSGAAAASPLSDPS 200
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 50.8 bits (120), Expect = 2e-06
Identities = 57/183 (31%), Positives = 72/183 (39%), Gaps = 11/183 (6%)
Query: 103 RKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSN-PNQRLPKVEILRNAIRYIEGLQ 161
R + RR AA +RER+R+ NEAF L+R + +RL K+ LR AI I L
Sbjct: 59 RPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALS 118
Query: 162 ALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDAS-SPRSNCSDGMMDYSGP--PS 218
+LR AP G GP G +GD+ AS P + S D + P PS
Sbjct: 119 LVLR-ASPAPRGPCGHLECHGPAARGD-----TGDTGASPPPPAGPSLARPDAARPSVPS 172
Query: 219 GARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSES 278
R +C A PS G A +S S P P L P
Sbjct: 173 APRCASCPPHAPL-ARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMG 231
Query: 279 PPR 281
PR
Sbjct: 232 HPR 234
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 50.8 bits (120), Expect = 2e-06
Identities = 57/183 (31%), Positives = 72/183 (39%), Gaps = 11/183 (6%)
Query: 103 RKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSN-PNQRLPKVEILRNAIRYIEGLQ 161
R + RR AA +RER+R+ NEAF L+R + +RL K+ LR AI I L
Sbjct: 59 RPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALS 118
Query: 162 ALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDAS-SPRSNCSDGMMDYSGP--PS 218
+LR AP G GP G +GD+ AS P + S D + P PS
Sbjct: 119 LVLR-ASPAPRGPCGHLECHGPAARGD-----TGDTGASPPPPAGPSLARPDAARPSVPS 172
Query: 219 GARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVERISTESPAAPALLLADVPSES 278
R +C A PS G A +S S P P L P
Sbjct: 173 APRCASCPPHAPL-ARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMG 231
Query: 279 PPR 281
PR
Sbjct: 232 HPR 234
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 50.4 bits (119), Expect = 2e-06
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 103 RKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSSN-PNQRLPKVEILRNAIRYIEGLQ 161
R + RR AA +RER+R+ NEAF L+R + +RL K+ LR AI I L
Sbjct: 59 RPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALS 118
Query: 162 ALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSDASSP 202
+LR AP G GP G +GD+ AS P
Sbjct: 119 LVLR-ASPAPRGPCGHLECHGPAARGD-----TGDTGASPP 153
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 117 RERRRLSKVNEAFETLK-RCTSSNPNQRLPKVEILRNAIRYIEGLQALLR---DQDAAPP 172
RER+R+ VNE + L+ + +RL KVE LR AIRYI+ LQ LL D P
Sbjct: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPA 257
Query: 173 GAAAAFYAPGPLPPGRGGEHYSGDSDASSPRS 204
P P PP GD +A +P S
Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGDGEARAPSS 289
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 117 RERRRLSKVNEAFETLK-RCTSSNPNQRLPKVEILRNAIRYIEGLQALLR---DQDAAPP 172
RER+R+ VNE + L+ + +RL KVE LR AIRYI+ LQ LL D P
Sbjct: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPA 257
Query: 173 GAAAAFYAPGPLPPGRGGEHYSGDSDASSPRS 204
P P PP GD +A +P S
Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGDGEARAPSS 289
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 117 RERRRLSKVNEAFETLK-RCTSSNPNQRLPKVEILRNAIRYIEGLQALLR---DQDAAPP 172
RER+R+ VNE + L+ + +RL KVE LR AIRYI+ LQ LL D P
Sbjct: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPA 257
Query: 173 GAAAAFYAPGPLPPGRGGEHYSGDSDASSPRS 204
P P PP GD +A +P S
Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGDGEARAPSS 289
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 50.4 bits (119), Expect = 2e-06
Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 117 RERRRLSKVNEAFETLKR-CTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDA------ 169
RER R+ VN F+ L++ +++L KVE LR+A+ YI LQ LL + DA
Sbjct: 58 RERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALA 117
Query: 170 --------------APPGAAAAFYAP--GPLPPGRGGEHYSGDSDASSPRSNCSDGMMDY 213
PPG +P PGRG G S+ SPRS S
Sbjct: 118 GGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRG-----GSSEPGSPRSAYSSDDSGC 172
Query: 214 SGPPSGARR 222
G S A R
Sbjct: 173 EGALSPAER 181
>gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
Length = 236
Score = 49.7 bits (117), Expect = 3e-06
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 117 RERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAA 175
RER R+ VN F TL+ + N+++ KVE LR+A+ YI LQ LL + DA
Sbjct: 126 RERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDEHDAVSAAFQ 185
Query: 176 AAFYAPGPLPPGRGGEHYSGD--SDASSPRSNCSDGMMDY 213
A +P P +YS D S A SP S+ S Y
Sbjct: 186 AGVLSPTISP------NYSNDLNSMAGSPVSSYSSDEGSY 219
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 49.3 bits (116), Expect = 5e-06
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 106 TNADRRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALL 164
T RR RER R VN AF L++ ++P +++L K EILR A++YI L LL
Sbjct: 184 TKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLL 243
Query: 165 RDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGD--------SDASSPRSNCSDGMMDYSGP 216
DQ+ G A P+ GG G D SP S+C + + P
Sbjct: 244 NDQE--EEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCGSSLDGAASP 301
Query: 217 PS 218
S
Sbjct: 302 DS 303
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 47.0 bits (110), Expect = 2e-05
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSS-NPNQRLPKVEILRNAIRYIEGLQALLR--- 165
RR AA RERRR+ +N AF+ L+ S N +++L K E L+ A YI L LL+
Sbjct: 160 RRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPS 219
Query: 166 --DQDAAPPGA----------AAAFYAPGPLPPGRGGEHYSGDSDASSPRSNC 206
+Q PP + AA++ G + SG S +P +C
Sbjct: 220 GGEQPPPPPASCKSDHHHLRTAASYEGGAGNATAAGAQQASGGSQRPTPPGSC 272
>gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
Length = 173
Score = 46.6 bits (109), Expect = 3e-05
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 117 RERRRLSKVNEAFETLK-RCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAA 175
RER+R+ VNE + L+ ++RL KVE LR AI YI+ LQ LL Q GAA
Sbjct: 81 RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEGAA 140
Query: 176 AAFYAPGPLPPGRGGEHYSGDSDASSPRSNCSD 208
G +P R + G+S ASS S S+
Sbjct: 141 ------GAVPQRRAECNSDGESKASSAPSPSSE 167
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 46.6 bits (109), Expect = 3e-05
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDA 169
+R A +RER+R +NEAF L++ + P+ +L K++ L+ A RYI+ L +L+ +
Sbjct: 109 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEL 168
Query: 170 APPGAAAAFYA 180
A+ ++ A
Sbjct: 169 DSKMASCSYVA 179
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 44.7 bits (104), Expect = 1e-04
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQD 168
+R A +RER+R +NEAF L++ + P+ +L K++ L+ A RYI+ L +L+ +
Sbjct: 67 QRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDE 125
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 44.7 bits (104), Expect = 1e-04
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 98 CKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSS-NPNQRLPKVEILRNAIRY 156
C R + A RR AA RERRR+ +N AF+ L+R +++L K E L+ A+ Y
Sbjct: 29 CAGAGRLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSY 88
Query: 157 IEGLQALLRDQD 168
I L +L + +
Sbjct: 89 IMALTRILAEAE 100
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 44.3 bits (103), Expect = 1e-04
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 59 PEEHSHFPAAVHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRE 118
PEE V G E+E R GR + + +++ +R+AA +RE
Sbjct: 62 PEEEE---CEVDQGDGEEEEEEER--------GRGVSLLGRPKRKRVITYAQRQAANIRE 110
Query: 119 RRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQDAAPPG 173
R+R+ +NEAF+ L+R + +RL ++E LR AI YI + LL + G
Sbjct: 111 RKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLESCEKKESG 166
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 44.3 bits (103), Expect = 1e-04
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQD 168
+R+AA RER R VN AF L+ + P +++L K+E LR A YI L +L D
Sbjct: 73 QRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGD 132
Query: 169 AAPPGA---AAAFYAPGPLPPGRGGEHYSGDSDASSPRSNCS 207
+A G AA A G +P G PRS C+
Sbjct: 133 SADDGQPCFRAAGSAKGAVPAAADG--------GRQPRSICT 166
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 43.9 bits (102), Expect = 2e-04
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQD 168
+R A RER R + VN AF L+ + P +++L K+E LR A YI L +L +
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
Query: 169 AAPPG-----AAAAFYA--------PGPLPPGRGGEH 192
A G A F+A P P PP R GE+
Sbjct: 136 ACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGEN 172
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 43.9 bits (102), Expect = 2e-04
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQD 168
+R A RER R + VN AF L+ + P +++L K+E LR A YI L +L +
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
Query: 169 AAPPG-----AAAAFYA--------PGPLPPGRGGEH 192
A G A F+A P P PP R GE+
Sbjct: 136 ACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGEN 172
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQD 168
RR A +ERRR +N AF L+ C + P + +L K++ LR A YI L LL D
Sbjct: 100 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 159
Query: 169 AAPPGAAAAFYA 180
G A AF A
Sbjct: 160 --QNGEAEAFKA 169
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 43.5 bits (101), Expect = 2e-04
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNPNQ-RLPKVEILRNAIRYIEGLQALLRDQD 168
RR A RER R+ +N A + L+ + P +L K+E LR A YI L LR D
Sbjct: 113 RRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETLRLAD 172
Query: 169 AAPPGA----AAAFYAPGPLPPGRGGEHYSGDSDASSPRSNCS 207
G A F L PG S D+ SP S S
Sbjct: 173 HCGGGGGGLPGALFSEAVLLSPGGASAALSSSGDSPSPASTWS 215
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 42.7 bits (99), Expect = 4e-04
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNP-NQRLPKVEILRNAIRYIEGLQALLRDQD 168
R+ RER R VN AF L++ ++P +++L K E LR A+RYI L +L +Q
Sbjct: 3 RKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGEQS 62
Query: 169 AAPPGAAAAFYAPGPLPPG 187
G AA G P G
Sbjct: 63 LQQTGVAAQGNILGLFPQG 81
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 42.4 bits (98), Expect = 6e-04
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 110 RRKAATMRERRRLSKVNEAFETLKRCTSSNPNQ-RLPKVEILRNAIRYIEGLQALLRDQD 168
RRK A RER R+ +N A + L+ + P+ +L K+E LR A YI L LR D
Sbjct: 84 RRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIAD 143
Query: 169 AA-----PPGAAAAFYAPGPLPPGRGGEHYSGDSDASS 201
+ PP PG G YS S A S
Sbjct: 144 HSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGS 181
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 42.0 bits (97), Expect = 7e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 109 DRRKAATMRERRRLSKVNEAFETLKRCTSSNPNQRLP-KVEILRNAIRYIEGLQALL 164
+RR+ A +ER R+ +N F LK P R P KV+IL+ A YI+ L LL
Sbjct: 65 ERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLL 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,447,065
Number of Sequences: 37866
Number of extensions: 956498
Number of successful extensions: 4805
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 4398
Number of HSP's gapped (non-prelim): 701
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.