Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MS4A1 Sequence: fasta or formatted (297aa) NCBI GI: 23110989
Description:

membrane-spanning 4-domains, subfamily A, member 1

Referenced in:

MS4 Family

Other entries for this name:
alt mRNA [297aa] membrane-spanning 4-domains, subfamily A, member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         15           2
 C cysteine            1.7          5           1
 D aspartate           1.3          4           1
 E glutamate           9.8         29           6
 F phenylalanine       4.4         13           2
 G glycine             5.7         17           2
 H histidine           1.0          3           1
 I isoleucine         10.8         32           2
 K lysine              5.4         16           2
 L leucine             8.4         25           2
 M methionine          4.7         14           1
 N asparagine          5.4         16           1
 P proline             7.4         22           2
 Q glutamine           3.7         11           1
 R arginine            2.7          8           2
 S serine             10.1         30           2
 T threonine           5.1         15           2
 V valine              4.0         12           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-spanning 4-domains, subfamily A, member 1 [... 
MS4A1                 1.000   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A15                0.095   membrane-spanning 4-domains, subfamily A, member 15...
MS4A4A                0.093   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4A                0.093   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A12                0.088   membrane-spanning 4-domains, subfamily A, member 12 [...
MS4A8B                0.081   membrane-spanning 4-domains, subfamily A, member 8B ...
MS4A4E                0.069   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.069   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.069   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A5                 0.063   membrane-spanning 4-domains, subfamily A, member 5 [...
MS4A6A                0.056   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.055   membrane-spanning 4-domains, subfamily A, member 6A ...
LOC728588             0.051   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.051   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.051   PREDICTED: similar to membrane-spanning 4-domains, ...
MS4A15                0.051   membrane-spanning 4-domains, subfamily A, member 15 ...
MS4A10                0.049   membrane-spanning 4-domains, subfamily A, member 10...
MS4A14                0.044   membrane-spanning 4-domains, subfamily A, member 14...
MS4A6A                0.044   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A2                 0.035   membrane-spanning 4-domains, subfamily A, member 2 is...
MS4A2                 0.034   membrane-spanning 4-domains, subfamily A, member 2 ...
MS4A7                 0.030   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.030   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A3                 0.030   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A13                0.026   membrane-spanning 4-domains, subfamily A, member 13...
TRIM44                0.021   DIPB protein 
PELP1                 0.019   proline, glutamic acid and leucine rich protein 1 [...
NEFH                  0.018   neurofilament, heavy polypeptide 200kDa 
CDC2L2                0.016   cell division cycle 2-like 2 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press