Guide to the Human Genome
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Name: MS4A6A Sequence: fasta or formatted (248aa) NCBI GI: 23238238
Description:

membrane-spanning 4-domains, subfamily A, member 6A isoform 1

Referenced in:

MS4 Family

Other entries for this name:
alt prot [225aa] membrane-spanning 4-domains, subfamily A, member 6A isoform 2
alt prot [178aa] membrane-spanning 4-domains, subfamily A, member 6A isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         16           1
 C cysteine            2.4          6           1
 D aspartate           2.4          6           1
 E glutamate           3.6          9           2
 F phenylalanine       4.8         12           3
 G glycine             5.2         13           1
 H histidine           2.4          6           1
 I isoleucine          7.7         19           2
 K lysine              4.4         11           2
 L leucine            14.1         35           2
 M methionine          2.4          6           2
 N asparagine          4.0         10           2
 P proline             4.8         12           1
 Q glutamine           3.6          9           1
 R arginine            1.2          3           1
 S serine             12.9         32           2
 T threonine           7.7         19           2
 V valine              5.6         14           1
 W tryptophan          0.4          1           1
 Y tyrosine            3.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-spanning 4-domains, subfamily A, member 6A ... 
MS4A6A                0.862   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.555   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6E                0.257   membrane-spanning 4-domains, subfamily A, member 6E ...
MS4A7                 0.235   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.235   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A12                0.114   membrane-spanning 4-domains, subfamily A, member 12 [...
MS4A7                 0.112   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.112   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A4E                0.102   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.102   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.102   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4A                0.102   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4A                0.102   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A5                 0.095   membrane-spanning 4-domains, subfamily A, member 5 [...
MS4A3                 0.093   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A15                0.093   membrane-spanning 4-domains, subfamily A, member 15...
MS4A1                 0.069   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A1                 0.069   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A2                 0.060   membrane-spanning 4-domains, subfamily A, member 2 is...
MS4A15                0.058   membrane-spanning 4-domains, subfamily A, member 15 ...
MS4A2                 0.058   membrane-spanning 4-domains, subfamily A, member 2 ...
MS4A8B                0.056   membrane-spanning 4-domains, subfamily A, member 8B ...
MS4A14                0.050   membrane-spanning 4-domains, subfamily A, member 14...
LOC728588             0.037   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.037   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.037   PREDICTED: similar to membrane-spanning 4-domains, ...
MS4A3                 0.032   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A10                0.030   membrane-spanning 4-domains, subfamily A, member 10...
SSPN                  0.024   sarcospan isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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