Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC728588 Sequence: fasta or formatted (391aa) NCBI GI: 169203526
Description:

PREDICTED: similar to membrane-spanning 4-domains, subfamily A, member 8B

Referenced in:

MS4 Family

Other entries for this name:
alt mRNA [391aa] PREDICTED: similar to membrane-spanning 4-domains, subfamily A, m...
alt mRNA [391aa] PREDICTED: similar to membrane-spanning 4-domains, subfamily A, m...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         30           2
 C cysteine            2.0          8           2
 D aspartate           1.0          4           1
 E glutamate           1.3          5           1
 F phenylalanine       4.1         16           1
 G glycine             5.9         23           2
 H histidine           2.6         10           1
 I isoleucine          6.6         26           3
 K lysine              2.6         10           2
 L leucine             7.4         29           2
 M methionine          0.8          3           1
 N asparagine          7.7         30           1
 P proline             9.2         36           2
 Q glutamine           4.1         16           2
 R arginine            1.3          5           1
 S serine             10.2         40           2
 T threonine          11.5         45           3
 V valine             10.0         39           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.3         13           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to membrane-spanning 4-domains, ... 
LOC728588             1.000   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             1.000   PREDICTED: similar to membrane-spanning 4-domains, ...
MS4A8B                0.127   membrane-spanning 4-domains, subfamily A, member 8B ...
MS4A12                0.108   membrane-spanning 4-domains, subfamily A, member 12 [...
MS4A15                0.078   membrane-spanning 4-domains, subfamily A, member 15...
MS4A15                0.070   membrane-spanning 4-domains, subfamily A, member 15 ...
SPEN                  0.061   spen homolog, transcriptional regulator 
MS4A4A                0.056   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4A                0.056   membrane-spanning 4-domains, subfamily A, member 4 i...
FAM65A                0.052   hypothetical protein LOC79567 
MS4A4E                0.043   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A3                 0.043   membrane-spanning 4-domains, subfamily A, member 3 i...
MUC2                  0.043   mucin 2 precursor 
MS4A4E                0.042   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.042   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A1                 0.038   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A1                 0.038   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A5                 0.034   membrane-spanning 4-domains, subfamily A, member 5 [...
LOC100294420          0.031   PREDICTED: similar to mucin 2 
POLR2A                0.031   DNA-directed RNA polymerase II A 
MUC5B                 0.029   mucin 5, subtype B, tracheobronchial 
MS4A7                 0.029   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.029   membrane-spanning 4-domains, subfamily A, member 7 i...
LOC730474             0.027   PREDICTED: hypothetical protein, partial 
LOC730474             0.026   PREDICTED: hypothetical protein 
CD68                  0.025   CD68 antigen isoform B 
CD68                  0.025   CD68 antigen isoform A 
MS4A2                 0.025   membrane-spanning 4-domains, subfamily A, member 2 ...
MS4A2                 0.025   membrane-spanning 4-domains, subfamily A, member 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press