Guide to the Human Genome
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Name: MS4A6A Sequence: fasta or formatted (225aa) NCBI GI: 23238234
Description:

membrane-spanning 4-domains, subfamily A, member 6A isoform 2

Referenced in:

MS4 Family

Other entries for this name:
alt prot [178aa] membrane-spanning 4-domains, subfamily A, member 6A isoform 3
alt prot [248aa] membrane-spanning 4-domains, subfamily A, member 6A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         17           1
 C cysteine            2.2          5           1
 D aspartate           2.2          5           1
 E glutamate           3.1          7           1
 F phenylalanine       5.3         12           3
 G glycine             4.9         11           1
 H histidine           1.8          4           1
 I isoleucine          8.0         18           2
 K lysine              4.4         10           2
 L leucine            14.2         32           2
 M methionine          1.8          4           2
 N asparagine          4.0          9           2
 P proline             4.9         11           1
 Q glutamine           4.0          9           1
 R arginine            1.3          3           1
 S serine             12.0         27           2
 T threonine           8.0         18           2
 V valine              6.7         15           1
 W tryptophan          0.4          1           1
 Y tyrosine            3.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-spanning 4-domains, subfamily A, member 6A ... 
MS4A6A                0.966   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.622   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6E                0.288   membrane-spanning 4-domains, subfamily A, member 6E ...
MS4A7                 0.262   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.262   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.126   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.126   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A4E                0.114   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.114   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.114   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A12                0.114   membrane-spanning 4-domains, subfamily A, member 12 [...
MS4A5                 0.107   membrane-spanning 4-domains, subfamily A, member 5 [...
MS4A3                 0.104   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A4A                0.102   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4A                0.102   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A15                0.092   membrane-spanning 4-domains, subfamily A, member 15...
MS4A1                 0.075   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A1                 0.075   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A2                 0.068   membrane-spanning 4-domains, subfamily A, member 2 is...
MS4A2                 0.065   membrane-spanning 4-domains, subfamily A, member 2 ...
MS4A8B                0.063   membrane-spanning 4-domains, subfamily A, member 8B ...
MS4A14                0.056   membrane-spanning 4-domains, subfamily A, member 14...
MS4A15                0.053   membrane-spanning 4-domains, subfamily A, member 15 ...
LOC728588             0.041   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.041   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.041   PREDICTED: similar to membrane-spanning 4-domains, ...
MS4A3                 0.036   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A10                0.034   membrane-spanning 4-domains, subfamily A, member 10...
SSPN                  0.027   sarcospan isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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