Guide to the Human Genome
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Name: MS4A13 Sequence: fasta or formatted (152aa) NCBI GI: 155029533
Description:

membrane-spanning 4-domains, subfamily A, member 13 isoform 1

Referenced in:

MS4 Family
Testes and Sperm

Other entries for this name:
alt prot [112aa] membrane-spanning 4-domains, subfamily A, member 13 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          6           1
 C cysteine            2.0          3           1
 D aspartate           0.7          1           1
 E glutamate           4.6          7           2
 F phenylalanine       7.9         12           2
 G glycine             7.2         11           1
 H histidine           2.0          3           1
 I isoleucine         14.5         22           2
 K lysine              2.6          4           1
 L leucine             9.9         15           2
 M methionine          2.0          3           1
 N asparagine          3.3          5           1
 P proline             2.0          3           1
 Q glutamine           2.0          3           1
 R arginine            4.6          7           2
 S serine              7.9         12           1
 T threonine          10.5         16           2
 V valine              5.3          8           1
 W tryptophan          1.3          2           1
 Y tyrosine            5.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-spanning 4-domains, subfamily A, member 13... 
MS4A13                0.662   membrane-spanning 4-domains, subfamily A, member 13...
MS4A8B                0.078   membrane-spanning 4-domains, subfamily A, member 8B ...
MS4A12                0.057   membrane-spanning 4-domains, subfamily A, member 12 [...
MS4A1                 0.053   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A1                 0.053   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A5                 0.046   membrane-spanning 4-domains, subfamily A, member 5 [...
MS4A4E                0.039   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.039   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.036   PREDICTED: membrane-spanning 4-domains, subfamily A...
SLC12A2               0.025   solute carrier family 12 (sodium/potassium/chloride t...
MS4A15                0.021   membrane-spanning 4-domains, subfamily A, member 15...
MS4A14                0.014   membrane-spanning 4-domains, subfamily A, member 14...
ATP6V0E2              0.011   ATPase, H+ transporting, V0 subunit isoform 2 [Homo...
MS4A15                0.007   membrane-spanning 4-domains, subfamily A, member 15 ...
CA5A                  0.007   carbonic anhydrase VA, mitochondrial precursor 
GSK3B                 0.007   glycogen synthase kinase 3 beta isoform 2 
GSK3B                 0.007   glycogen synthase kinase 3 beta isoform 1 
SLC12A4               0.007   solute carrier family 12, member 4 isoform e 
SLC12A4               0.007   solute carrier family 12, member 4 isoform d 
SLC12A4               0.007   solute carrier family 12, member 4 isoform c 
SLC12A4               0.007   solute carrier family 12, member 4 isoform b 
SLC12A4               0.007   solute carrier family 12, member 4 isoform a 
UBR1                  0.007   ubiquitin protein ligase E3 component n-recognin 1 [...
SLC47A1               0.007   solute carrier family 47, member 1 
CLCN3                 0.007   chloride channel 3 isoform e 
CLCN3                 0.007   chloride channel 3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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