Guide to the Human Genome
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Name: MS4A8B Sequence: fasta or formatted (250aa) NCBI GI: 13899295
Description:

membrane-spanning 4-domains, subfamily A, member 8B

Referenced in:

MS4 Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         19           2
 C cysteine            2.8          7           2
 D aspartate           0.8          2           1
 E glutamate           2.4          6           1
 F phenylalanine       3.2          8           1
 G glycine             9.2         23           2
 H histidine           2.4          6           1
 I isoleucine          8.4         21           3
 K lysine              1.6          4           1
 L leucine             9.2         23           2
 M methionine          2.0          5           1
 N asparagine          5.6         14           1
 P proline             9.6         24           2
 Q glutamine           3.6          9           1
 R arginine            0.0          0           0
 S serine             11.6         29           2
 T threonine           2.8          7           1
 V valine             10.4         26           2
 W tryptophan          1.2          3           1
 Y tyrosine            5.6         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-spanning 4-domains, subfamily A, member 8B ... 
MS4A12                0.244   membrane-spanning 4-domains, subfamily A, member 12 [...
MS4A15                0.205   membrane-spanning 4-domains, subfamily A, member 15...
LOC728588             0.199   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.199   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.199   PREDICTED: similar to membrane-spanning 4-domains, ...
MS4A4A                0.148   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4A                0.148   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A15                0.133   membrane-spanning 4-domains, subfamily A, member 15 ...
MS4A4E                0.125   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.121   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.121   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A1                 0.094   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A1                 0.094   membrane-spanning 4-domains, subfamily A, member 1 [...
MS4A2                 0.086   membrane-spanning 4-domains, subfamily A, member 2 ...
MS4A2                 0.086   membrane-spanning 4-domains, subfamily A, member 2 is...
MS4A10                0.086   membrane-spanning 4-domains, subfamily A, member 10...
MS4A3                 0.084   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A14                0.068   membrane-spanning 4-domains, subfamily A, member 14...
MS4A5                 0.066   membrane-spanning 4-domains, subfamily A, member 5 [...
MS4A6A                0.053   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.053   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.053   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A7                 0.047   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.047   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A13                0.045   membrane-spanning 4-domains, subfamily A, member 13...
MS4A14                0.035   membrane-spanning 4-domains, subfamily A, member 14...
MS4A3                 0.031   membrane-spanning 4-domains, subfamily A, member 3 i...
FAM189B               0.021   hypothetical protein LOC10712 isoform a 
SLC12A1               0.014   sodium potassium chloride cotransporter 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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