Search of human proteins with 22907044

Search of human proteins with 22907044

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3F isoform a [Homo sapiens]
         (373 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...   821   0.0  
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol...   629   e-180
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...   443   e-124
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...   367   e-101
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly...   323   1e-88
gi|10190700 activation-induced cytidine deaminase [Homo sapiens]      144   2e-34
gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic poly...   127   1e-29
gi|21955158 phorbolin 1 [Homo sapiens]                                122   4e-28
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...   119   6e-27
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly...   112   7e-25
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]        88   1e-17
gi|44888831 apolipoprotein B [Homo sapiens]                            32   0.92 
gi|105990535 coagulation factor V precursor [Homo sapiens]             29   6.0  

>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score =  821 bits (2120), Expect = 0.0
 Identities = 373/373 (100%), Positives = 373/373 (100%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 60
           MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 60

Query: 61  QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA 120
           QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA
Sbjct: 61  QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA 120

Query: 121 RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL 180
           RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL
Sbjct: 121 RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL 180

Query: 181 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN 240
           HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN
Sbjct: 181 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN 240

Query: 241 QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT 300
           QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT
Sbjct: 241 QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT 300

Query: 301 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN 360
           IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN
Sbjct: 301 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN 360

Query: 361 FLFLDSKLQEILE 373
           FLFLDSKLQEILE
Sbjct: 361 FLFLDSKLQEILE 373


>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3D [Homo sapiens]
          Length = 386

 Score =  629 bits (1621), Expect = e-180
 Identities = 299/386 (77%), Positives = 321/386 (83%), Gaps = 13/386 (3%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRG--- 56
           M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRG   
Sbjct: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 60

Query: 57  ---------QVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL 107
                    +VY + E+HAEMCFLSWFCGN+LPA + FQITWFVSW PC  CV K+ +FL
Sbjct: 61  PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL 120

Query: 108 AEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPF 167
           AEHPNVTLTISAARLYYY +RD+R  L RL +AGARVKIMD E+FAYCWENFV +EGQPF
Sbjct: 121 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF 180

Query: 168 MPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKH 227
           MPWYKFDDNYA LHRTLKEILRNPMEAMYPHIFYFHFKNL KA GRNESWLCFTMEV KH
Sbjct: 181 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH 240

Query: 228 HSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV 287
           HS V  KRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV
Sbjct: 241 HSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV 300

Query: 288 AEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYND 347
           AEFLARHSNVNLTIFTARL YFWDTDYQEGL SLSQEGASV+IMGYKDF  CW+NFVY+D
Sbjct: 301 AEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSD 360

Query: 348 DEPFKPWKGLKYNFLFLDSKLQEILE 373
           DEPFKPWKGL+ NF  L  +L+EIL+
Sbjct: 361 DEPFKPWKGLQTNFRLLKRRLREILQ 386


>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score =  443 bits (1139), Expect = e-124
 Identities = 228/383 (59%), Positives = 266/383 (69%), Gaps = 15/383 (3%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY 59
           M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRGQVY
Sbjct: 1   MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60

Query: 60  SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 119
            +P++HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL+EHPNVTLTISA
Sbjct: 61  FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 120

Query: 120 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF 179
           ARLYYYWERDYRRALCRLSQAGARV IMD EEFAYCWENFVY+EGQ FMPWYKFD+NYAF
Sbjct: 121 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 180

Query: 180 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKR--GV 237
           LHRTLKEILR  M+   P  F F+F N      R +++LC+ +E + + + V   +  G 
Sbjct: 181 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGF 237

Query: 238 FRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEF 290
             N+      C     HAE  FL       L P   Y VTW+ SWSPC    CAGEV  F
Sbjct: 238 LCNEA-KNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAF 296

Query: 291 LARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEP 350
           L  +++V L IF AR+Y + D  Y+E L+ L   GA V IM Y +F+YCW+ FVY    P
Sbjct: 297 LQENTHVRLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP 355

Query: 351 FKPWKGLKYNFLFLDSKLQEILE 373
           F+PW GL+ +   L  +L+ IL+
Sbjct: 356 FQPWDGLEEHSQALSGRLRAILQ 378



 Score =  122 bits (306), Expect = 5e-28
 Identities = 72/188 (38%), Positives = 103/188 (54%), Gaps = 16/188 (8%)

Query: 15  DTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRL----------DAKIFRGQVYSQPEH 64
           DTF++NF N P++ RR   +LCYEV+        L          +AK      Y +   
Sbjct: 196 DTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGR--- 252

Query: 65  HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPD--CVAKLAEFLAEHPNVTLTISAARL 122
           HAE+ FL      QL   + +++TWF+SW+PC    C  ++  FL E+ +V L I AAR+
Sbjct: 253 HAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARI 312

Query: 123 YYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHR 182
           Y Y +  Y+ AL  L  AGA+V IM  +EF YCW+ FVY +G PF PW   +++   L  
Sbjct: 313 YDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSG 371

Query: 183 TLKEILRN 190
            L+ IL+N
Sbjct: 372 RLRAILQN 379


>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score =  367 bits (941), Expect = e-101
 Identities = 194/385 (50%), Positives = 253/385 (65%), Gaps = 17/385 (4%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 60
           MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRP LDAKIFRGQVYS
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS 60

Query: 61  QPEHHAEMCFLSWFC-GNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 119
           + ++H EM F  WF    +L   + +++TW++SW+PC  C   +A FLAE P VTLTI  
Sbjct: 61  ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV 120

Query: 120 ARLYYYWERDYRRALCRLSQ----AGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDD 175
           ARLYY+W+ DY+ AL  L Q      A +KIM+ +EF +CW  FVYS+ + F PW     
Sbjct: 121 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK 180

Query: 176 NYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPV--SW 233
            Y  LH  L EILR+ M+   P  F F+F N     GR+E++LC+ +E + + + V  + 
Sbjct: 181 YYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ 237

Query: 234 KRGVFRNQVDPETH-----CHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVA 288
           +RG   NQ  P  H      HAE CFL       L  + +Y VT +TSWSPC  CA E+A
Sbjct: 238 RRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMA 296

Query: 289 EFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD 348
           +F++++ +V+L IFTAR+Y       QEGLR+L++ GA + IM Y +FK+CW+ FV +  
Sbjct: 297 KFISKNKHVSLCIFTARIYDD-QGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQG 355

Query: 349 EPFKPWKGLKYNFLFLDSKLQEILE 373
            PF+PW GL  +   L  +L+ IL+
Sbjct: 356 CPFQPWDGLDEHSQDLSGRLRAILQ 380



 Score =  110 bits (274), Expect = 3e-24
 Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 18/187 (9%)

Query: 16  TFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIF----RGQVYSQPEH------- 64
           TF++NF N P +  R+  +LCYEV+     R   D  +     RG + +Q  H       
Sbjct: 201 TFTFNFNNEPWVRGRHETYLCYEVE-----RMHNDTWVLLNQRRGFLCNQAPHKHGFLEG 255

Query: 65  -HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLY 123
            HAE+CFL      +L   + +++T F SW+PC  C  ++A+F++++ +V+L I  AR+Y
Sbjct: 256 RHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY 315

Query: 124 YYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRT 183
               R  +  L  L++AGA++ IM   EF +CW+ FV  +G PF PW   D++   L   
Sbjct: 316 DDQGR-CQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGR 374

Query: 184 LKEILRN 190
           L+ IL+N
Sbjct: 375 LRAILQN 381


>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3C [Homo sapiens]
          Length = 190

 Score =  323 bits (829), Expect = 1e-88
 Identities = 147/186 (79%), Positives = 161/186 (86%)

Query: 188 LRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETH 247
           +RNPM+AMYP  FYF FKNL +A  RNE+WLCFT+E +K  S VSWK GVFRNQVD ETH
Sbjct: 5   IRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETH 64

Query: 248 CHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLY 307
           CHAERCFLSWFCDDILSPNT Y+VTWYTSWSPCP+CAGEVAEFLARHSNVNLTIFTARLY
Sbjct: 65  CHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLY 124

Query: 308 YFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSK 367
           YF    YQEGLRSLSQEG +VEIM Y+DFKYCWENFVYND+EPFKPWKGLK NF  L  +
Sbjct: 125 YFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRLLKRR 184

Query: 368 LQEILE 373
           L+E L+
Sbjct: 185 LRESLQ 190



 Score =  185 bits (470), Expect = 5e-47
 Identities = 90/190 (47%), Positives = 115/190 (60%), Gaps = 1/190 (0%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQVY 59
           M P  RN ++ MY  TF + F N    + RN  WLC+ V+  K  S       +FR QV 
Sbjct: 1   MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD 60

Query: 60  SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA 119
           S+   HAE CFLSWFC + L     +Q+TW+ SW+PCPDC  ++AEFLA H NV LTI  
Sbjct: 61  SETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFT 120

Query: 120 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF 179
           ARLYY+    Y+  L  LSQ G  V+IMD E+F YCWENFVY++ +PF PW     N+  
Sbjct: 121 ARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRL 180

Query: 180 LHRTLKEILR 189
           L R L+E L+
Sbjct: 181 LKRRLRESLQ 190


>gi|10190700 activation-induced cytidine deaminase [Homo sapiens]
          Length = 198

 Score =  144 bits (362), Expect = 2e-34
 Identities = 75/174 (43%), Positives = 102/174 (58%), Gaps = 5/174 (2%)

Query: 200 FYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFC 259
           F + FKN+R A GR E++LC+ ++     +  S   G  RN+      CH E  FL +  
Sbjct: 11  FLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK----NGCHVELLFLRYIS 66

Query: 260 DDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQ-EGL 318
           D  L P   Y VTW+TSWSPC +CA  VA+FL  + N++L IFTARLY+  D   + EGL
Sbjct: 67  DWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGL 126

Query: 319 RSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEIL 372
           R L + G  + IM +KD+ YCW  FV N +  FK W+GL  N + L  +L+ IL
Sbjct: 127 RRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180



 Score =  108 bits (271), Expect = 6e-24
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 4/178 (2%)

Query: 12  MYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFL 71
           M R  F Y F N      R   +LCY VK +  +       +  G + ++   H E+ FL
Sbjct: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT---SFSLDFGYLRNKNGCHVELLFL 62

Query: 72  SWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYR 131
            +     L   +C+++TWF SW+PC DC   +A+FL  +PN++L I  ARLY+  +R   
Sbjct: 63  RYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAE 122

Query: 132 -RALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEIL 188
              L RL +AG ++ IM  +++ YCW  FV +  + F  W    +N   L R L+ IL
Sbjct: 123 PEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180


>gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3F isoform b [Homo sapiens]
          Length = 101

 Score =  127 bits (320), Expect = 1e-29
 Identities = 65/89 (73%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 60
          MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV  
Sbjct: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV-P 59

Query: 61 QPEHHAEMCFLSWFCGNQLPAYKCFQITW 89
          +    A    LS   G   P +   Q+ W
Sbjct: 60 RSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 184 LKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVD 243
           +K   RN +E MY   F ++F N      RN  WLC+ ++  K  S       +FR QV 
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQV- 58

Query: 244 PETHCHAERCFLSWFCDDILSPNTNYEVTW 273
           P +   A    LS        P+   +V W
Sbjct: 59  PRSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88


>gi|21955158 phorbolin 1 [Homo sapiens]
          Length = 199

 Score =  122 bits (307), Expect = 4e-28
 Identities = 76/192 (39%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 191 PMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWK--RGVFRNQVDPETHC 248
           P   M PHIF  +F N     GR++++LC+ +E + + + V     RG   NQ      C
Sbjct: 9   PRHLMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAK-NLLC 64

Query: 249 -----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNVNLTI 301
                HAE  FL       L P   Y VTW+ SWSPC    CAGEV  FL  +++V L I
Sbjct: 65  GFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRI 124

Query: 302 FTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNF 361
           F AR+Y + D  Y+E L+ L   GA V IM Y +FK+CW+ FV +   PF+PW GL  + 
Sbjct: 125 FAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHS 183

Query: 362 LFLDSKLQEILE 373
             L  +L+ IL+
Sbjct: 184 QALSGRLRAILQ 195



 Score =  105 bits (263), Expect = 5e-23
 Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 17/185 (9%)

Query: 17  FSYNFYNRPILSRRNTVWLCYEV-KTKGPSRPRLDAKIFRGQVYSQPEH--------HAE 67
           F+ NF N      R+  +LCYEV +    +  ++D    RG +++Q ++        HAE
Sbjct: 18  FTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQH--RGFLHNQAKNLLCGFYGRHAE 72

Query: 68  MCFLSWFCGNQLPAYKCFQITWFVSWTPCPD--CVAKLAEFLAEHPNVTLTISAARLYYY 125
           + FL      QL   + +++TWF+SW+PC    C  ++  FL E+ +V L I AAR+Y Y
Sbjct: 73  LRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDY 132

Query: 126 WERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLK 185
            +  Y+ AL  L  AGA+V IM  +EF +CW+ FV  +G PF PW   D++   L   L+
Sbjct: 133 -DPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLR 191

Query: 186 EILRN 190
            IL+N
Sbjct: 192 AILQN 196


>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score =  119 bits (297), Expect = 6e-27
 Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 13/199 (6%)

Query: 184 LKEILRNPM------EAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGV 237
           LKE++  P       E +  + F F F+N+  + GRN+++LC+ +E       V   RG 
Sbjct: 30  LKELIELPPFEIVTGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGY 89

Query: 238 FRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNV 297
                D     HAE  F +        P   Y VTWY S SPC  CA  + + L++  N+
Sbjct: 90  LE---DEHAAAHAEEAFFNTILP-AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNL 145

Query: 298 NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD---EPFKPW 354
            L I   RL+ + + + Q  L+ L + G  + IM  +DF+Y W+NFV  ++   + F+PW
Sbjct: 146 RLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW 205

Query: 355 KGLKYNFLFLDSKLQEILE 373
           + ++ NFL+ + KL +IL+
Sbjct: 206 EDIQENFLYYEEKLADILK 224



 Score =  102 bits (254), Expect = 6e-22
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 12/188 (6%)

Query: 8   TVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEH--- 64
           T ER+  + F + F N    S RN  +LCY V+ +G        ++   + Y + EH   
Sbjct: 43  TGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKG-----GQVQASRGYLEDEHAAA 97

Query: 65  HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYY 124
           HAE  F +       PA + + +TW+VS +PC  C  ++ + L++  N+ L I   RL+ 
Sbjct: 98  HAEEAFFNTILPAFDPALR-YNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFM 156

Query: 125 YWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFV---YSEGQPFMPWYKFDDNYAFLH 181
           + E + + AL +L +AG +++IM  ++F Y W+NFV     E + F PW    +N+ +  
Sbjct: 157 WEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYE 216

Query: 182 RTLKEILR 189
             L +IL+
Sbjct: 217 EKLADILK 224


>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3H [Homo sapiens]
          Length = 183

 Score =  112 bits (279), Expect = 7e-25
 Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 11/171 (6%)

Query: 192 MEAMYPHIFYFHFKN---LRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHC 248
           M  +    F   F N   LR+ Y   ++ LC+ +      +P    RG F N+      C
Sbjct: 1   MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPT---RGYFENK----KKC 53

Query: 249 HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYY 308
           HAE CF++      L     Y+VT Y +WSPC  CA E+ +F+  H ++NL IF +RLYY
Sbjct: 54  HAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYY 113

Query: 309 FWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDE-PFKPWKGLK 358
            W    Q+GLR L      VE+MG+ +F  CWENFV ++    F P+K L+
Sbjct: 114 HWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLE 164



 Score = 99.0 bits (245), Expect = 6e-21
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%)

Query: 15  DTFSYNFYNRPILSRR---NTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFL 71
           +TF   F N+  L R        LCY++  +  S P       RG   ++ + HAE+CF+
Sbjct: 7   ETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPT------RGYFENKKKCHAEICFI 60

Query: 72  SWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYR 131
           +      L   +C+Q+T +++W+PC  C  +L +F+  H ++ L I A+RLYY+W +  +
Sbjct: 61  NEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQ 120

Query: 132 RALCRLSQAGARVKIMDDEEFAYCWENFVYSEG----QPFMPWYKFDDNYAFLHRTLKEI 187
           + L  L  +   V++M   EFA CWENFV  E      P+    + D N   + R L+ I
Sbjct: 121 KGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLERI 180


>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
          Length = 236

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)

Query: 231 VSW--KRGVFRNQVDPETHCHAERCFLSWFCDDI-LSPNTNYEVTWYTSWSPCPECAGEV 287
           + W   R ++R+     T+ H E  F+  F  +    P+ +  +TW+ SWSPC EC+  +
Sbjct: 42  IKWGMSRKIWRSSGKNTTN-HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAI 100

Query: 288 AEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFV 344
            EFL+RH  V L I+ ARL++  D   ++GLR L   G +++IM   ++ +CW NFV
Sbjct: 101 REFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157



 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 10/133 (7%)

Query: 30  RNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQ--LPAYKCFQI 87
           R    L YE+K  G SR     KI+R        +H E+ F+  F   +   P+  C  I
Sbjct: 33  RKEACLLYEIKW-GMSR-----KIWRSSG-KNTTNHVEVNFIKKFTSERDFHPSMSC-SI 84

Query: 88  TWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIM 147
           TWF+SW+PC +C   + EFL+ HP VTL I  ARL+++ ++  R+ L  L  +G  ++IM
Sbjct: 85  TWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLVNSGVTIQIM 144

Query: 148 DDEEFAYCWENFV 160
              E+ +CW NFV
Sbjct: 145 RASEYYHCWRNFV 157


>gi|44888831 apolipoprotein B [Homo sapiens]
          Length = 367

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 94  TPCPD----CVAKLAEFLAEHPNVTLTISAARLYY--------YWERDYRRALCRL 137
           +PC +    C++K+  FL  +P +TL+I  ++LY+         W R+  R+L  L
Sbjct: 125 SPCNEANHCCISKMYNFLITYPGITLSIYFSQLYHTEMDFPASAWNREALRSLASL 180


>gi|105990535 coagulation factor V precursor [Homo sapiens]
          Length = 2224

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 257  WFCDD-ILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVN 298
            WF +D  + PN++Y   W+ +    PE  G      A +S VN
Sbjct: 1693 WFKEDNAVQPNSSYTYVWHATERSGPESPGSACRAWAYYSAVN 1735


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.139    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,607,430
Number of Sequences: 37866
Number of extensions: 705314
Number of successful extensions: 1654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1587
Number of HSP's gapped (non-prelim): 23
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.