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Search of human proteins with 22748999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748999 hypothetical protein LOC147685 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748999 hypothetical protein LOC147685 [Homo sapiens] 427 e-120
gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo... 35 0.063
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 34 0.082
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 34 0.082
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 34 0.11
gi|38044112 restin isoform b [Homo sapiens] 33 0.14
gi|4506751 restin isoform a [Homo sapiens] 33 0.14
gi|22209004 popeye protein 2 [Homo sapiens] 33 0.18
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens] 32 0.31
gi|21735569 claspin [Homo sapiens] 32 0.41
gi|29789283 WD repeat domain 75 [Homo sapiens] 32 0.53
gi|15451916 bone morphogenetic protein receptor type II precurso... 31 0.70
gi|36287060 K(lysine) acetyltransferase 5 isoform 3 [Homo sapiens] 31 0.70
gi|55770834 centromere protein F [Homo sapiens] 31 0.70
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens] 31 0.70
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 30 1.2
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 30 1.2
gi|21450721 enkurin [Homo sapiens] 30 1.2
gi|29294627 PTPRF interacting protein binding protein 1 isoform ... 30 1.2
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 30 1.2
gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens] 30 1.5
gi|154354985 hook homolog 2 isoform 1 [Homo sapiens] 30 2.0
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 29 2.6
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 29 2.6
gi|7705415 hook homolog 1 [Homo sapiens] 29 2.6
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 29 2.6
gi|50312664 ubiquitin specific protease 16 isoform b [Homo sapiens] 29 3.5
gi|5454156 ubiquitin specific protease 16 isoform a [Homo sapiens] 29 3.5
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 29 3.5
gi|75992941 ubiquitin specific protease 16 isoform a [Homo sapiens] 29 3.5
>gi|22748999 hypothetical protein LOC147685 [Homo sapiens]
Length = 215
Score = 427 bits (1097), Expect = e-120
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MDKVQSGFLILFLFLMECQLHLCLPYADGLHPTGNITGLPGSKRSQPPRNITKEPKVFFH 60
MDKVQSGFLILFLFLMECQLHLCLPYADGLHPTGNITGLPGSKRSQPPRNITKEPKVFFH
Sbjct: 1 MDKVQSGFLILFLFLMECQLHLCLPYADGLHPTGNITGLPGSKRSQPPRNITKEPKVFFH 60
Query: 61 KTQLPGIQGAASRSTAASPTNPMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAIS 120
KTQLPGIQGAASRSTAASPTNPMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAIS
Sbjct: 61 KTQLPGIQGAASRSTAASPTNPMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAIS 120
Query: 121 YMIYRLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVII 180
YMIYRLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVII
Sbjct: 121 YMIYRLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVII 180
Query: 181 SKRSKNIKKKLKEEQNSVTENKTKNASHNGKMEDL 215
SKRSKNIKKKLKEEQNSVTENKTKNASHNGKMEDL
Sbjct: 181 SKRSKNIKKKLKEEQNSVTENKTKNASHNGKMEDL 215
>gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo
sapiens]
Length = 1980
Score = 34.7 bits (78), Expect = 0.063
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 99 VKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKNLRIPLLGDEEEGS---- 154
V VI + S ++ +A++Y A EE +Q E+ +K + L +EE
Sbjct: 392 VLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQEEAQAAAM 451
Query: 155 ------------EDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKE----EQNSV 198
E+EGE P + +E+ K +R++ K+K KE E+
Sbjct: 452 ATSAGTVSEDAIEEEGEEGGGSPRSSSEISKLSSKSAKERRNRRKKRKQKELSEGEEKGD 511
Query: 199 TENKTKNASHNG 210
E K+ S +G
Sbjct: 512 PEKVFKSESEDG 523
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 34.3 bits (77), Expect = 0.082
Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 23/189 (12%)
Query: 31 HPTGNITGLPGSKRSQPPRNITKEPKVFFHKTQLPGIQGAASRSTAASPTNPMKFLRNKA 90
HP + G+ + +PP + + P F LP GAA SP P++ LR+KA
Sbjct: 1757 HPRHGLPGVGVTTSLRPPHHFS--PPCFV--AALPAA-GAAEAPARLSPAIPLEALRDKA 1811
Query: 91 I------IRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKNLRI 144
+ +R + + SV F + + + ++ + E+ +Q+ + +
Sbjct: 1812 LRMLGEAVRDGGQHARDPVGGSVEFQFVPVLKLVSTLLVMGIFGDEDVKQILKMIE---- 1867
Query: 145 PLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVTENKTK 204
P + EEE EDE E E E E ++ + + K+ ++E+ E + +
Sbjct: 1868 PEVFTEEEEEEDEEEEGEEEDEEEKEEDE--------EETAQEKEDEEKEEEEAAEGEKE 1919
Query: 205 NASHNGKME 213
G ++
Sbjct: 1920 EGLEEGLLQ 1928
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 34.3 bits (77), Expect = 0.082
Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 23/189 (12%)
Query: 31 HPTGNITGLPGSKRSQPPRNITKEPKVFFHKTQLPGIQGAASRSTAASPTNPMKFLRNKA 90
HP + G+ + +PP + + P F LP GAA SP P++ LR+KA
Sbjct: 1757 HPRHGLPGVGVTTSLRPPHHFS--PPCFV--AALPAA-GAAEAPARLSPAIPLEALRDKA 1811
Query: 91 I------IRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKNLRI 144
+ +R + + SV F + + + ++ + E+ +Q+ + +
Sbjct: 1812 LRMLGEAVRDGGQHARDPVGGSVEFQFVPVLKLVSTLLVMGIFGDEDVKQILKMIE---- 1867
Query: 145 PLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVTENKTK 204
P + EEE EDE E E E E ++ + + K+ ++E+ E + +
Sbjct: 1868 PEVFTEEEEEEDEEEEGEEEDEEEKEEDE--------EETAQEKEDEEKEEEEAAEGEKE 1919
Query: 205 NASHNGKME 213
G ++
Sbjct: 1920 EGLEEGLLQ 1928
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 33.9 bits (76), Expect = 0.11
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 130 EERQQLESLYKNLRIPLLGDE-----EEGSEDEGESTHLLPENENELEKFIHSVIISKRS 184
EE + E + K P G E E+GSE+EGE E ++ + K
Sbjct: 199 EEEDKEEEIIKEKEPPKQGKEKAKKAEQGSEEEGEGEEEEEEGGESKADDPYAHLSKKEK 258
Query: 185 KNIKKKLKEEQNSVTENKTKNASHN 209
K +KK++ E + V K NA+ N
Sbjct: 259 KKLKKQM-EYERQVASLKAANAAEN 282
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 33.5 bits (75), Expect = 0.14
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 131 ERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEK---FIHSVIISKRSKNI 187
++ +LE KNL + L ++ + S G + E+E E F++SVI+ + KN
Sbjct: 1233 DKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQ 1292
Query: 188 KKKLKEEQNSVTENKTKNASHNGKMEDL 215
K+K E S A+ NG +DL
Sbjct: 1293 DLKMKVEMMS-------EAALNGNGDDL 1313
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 33.5 bits (75), Expect = 0.14
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 131 ERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEK---FIHSVIISKRSKNI 187
++ +LE KNL + L ++ + S G + E+E E F++SVI+ + KN
Sbjct: 1268 DKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQESQIDFLNSVIVDLQRKNQ 1327
Query: 188 KKKLKEEQNSVTENKTKNASHNGKMEDL 215
K+K E S A+ NG +DL
Sbjct: 1328 DLKMKVEMMS-------EAALNGNGDDL 1348
>gi|22209004 popeye protein 2 [Homo sapiens]
Length = 364
Score = 33.1 bits (74), Expect = 0.18
Identities = 12/39 (30%), Positives = 27/39 (69%)
Query: 108 AFSIALICGMAISYMIYRLAQAEERQQLESLYKNLRIPL 146
+F +A++C + +++++YRL + ++ + LYK L +PL
Sbjct: 81 SFLLAVVCLLQLAHLVYRLREDTLPEEFDLLYKTLCLPL 119
>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
Length = 1041
Score = 32.3 bits (72), Expect = 0.31
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 122 MIYRLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIIS 181
++ + A+A ER+ L KN LL D EE SE+ + + L+K
Sbjct: 75 VVEKPARAAEREARALLEKNRSYRLLEDSEESSEE------TVSRAGSSLQK------KR 122
Query: 182 KRSKNIKKKLKEEQNSVTENKTKNASHNGKME 213
K+ K+++KK +EE+ K K + K +
Sbjct: 123 KKRKHLRKKREEEEEEEASEKGKKKTGGSKQQ 154
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 32.0 bits (71), Expect = 0.41
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 125 RLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRS 184
+L + EERQ+ ++L+K L +E+ E+E E + E+E + E
Sbjct: 606 KLRRFEERQKRQALFK------LDNEDGFEEEEEEEEEMTDESEEDGE------------ 647
Query: 185 KNIKKKLKEEQNSVTENKTKNASHNGKME 213
+ ++K+ KEE+ E K + G E
Sbjct: 648 EKVEKEEKEEELEEEEEKEEEEEEEGNQE 676
>gi|29789283 WD repeat domain 75 [Homo sapiens]
Length = 830
Score = 31.6 bits (70), Expect = 0.53
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 121 YMIYRLAQAEERQQLESLYKN--LRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSV 178
Y I + ++ ++L +N +++PL + SE H+LP F++S+
Sbjct: 696 YFILGKHRQQQDEKLNETLENELVQLPLTENIPAISELLHTPAHVLPSAAFLCSMFVNSL 755
Query: 179 IISKRSKNIK--------KKLKEEQNSVTEN----KTKNASHNGKMEDL 215
++SK +K+ K ++ KE ++S EN K ++ S+ G ED+
Sbjct: 756 LLSKETKSAKEIPEDVDMEEEKESEDSDEENDFTEKVQDTSNTGLGEDI 804
>gi|15451916 bone morphogenetic protein receptor type II precursor
[Homo sapiens]
Length = 1038
Score = 31.2 bits (69), Expect = 0.70
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 18/158 (11%)
Query: 30 LHPTGNITGLPGSKRSQP--PRNITKEPKVFF---HKTQLPGIQGAASRSTAASPTNPMK 84
++P LP S P +N TKEP++ F HK+ L ++ ++ + P
Sbjct: 742 IYPLPKQQNLPKRPTSLPLNTKNSTKEPRLKFGSKHKSNLKQVETGVAKMNTINAAEPHV 801
Query: 85 FLRNKAIIRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKNLRI 144
+ R V ++ + ++ G + + +R A+E Q + + ++ R+
Sbjct: 802 VTVTMNGVAGRNHSVNSHAATTQYANGTVLSGQTTNIVTHR---AQEMLQNQFIGEDTRL 858
Query: 145 ----------PLLGDEEEGSEDEGESTHLLPENENELE 172
PLL E++ DEG L+ E LE
Sbjct: 859 NINSSPDEHEPLLRREQQAGHDEGVLDRLVDRRERPLE 896
>gi|36287060 K(lysine) acetyltransferase 5 isoform 3 [Homo sapiens]
Length = 461
Score = 31.2 bits (69), Expect = 0.70
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 25 PYADGLHPTGNITGLPGSKRSQPPRNITKEPKVFFHKTQLPG---------IQGAASRST 75
P + PT N GLPGS+ P R + ++ +V T +P GAA R+
Sbjct: 71 PKKEAKTPTKN--GLPGSRPGSPEREVKRKVEVVSPATPVPSETAPASVFPQNGAARRAV 128
Query: 76 AASPTNPMK 84
AA P K
Sbjct: 129 AAQPGRKRK 137
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 31.2 bits (69), Expect = 0.70
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 125 RLAQAEERQQLESLYKN-LRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKR 183
+L +AE+ Q + +N LR + E + E+ L +E + + H +
Sbjct: 459 KLCRAEQAFQASQIKENELRRSM-------EEMKKENNLLKSHSEQKAREVCH---LEAE 508
Query: 184 SKNIKKKLKEEQNSVTENKTKNASHNGKMEDL 215
KNIK+ L + QN E K KN S + DL
Sbjct: 509 LKNIKQCLNQSQNFAEEMKAKNTSQETMLRDL 540
>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
Length = 894
Score = 31.2 bits (69), Expect = 0.70
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 125 RLAQAEERQQLESLYKNLRIPLLGDEEEGSEDE----------GESTHLLPENENELEKF 174
R A+ ++ + +N R +L + E E GE T +LP+ +E+F
Sbjct: 11 RFESAKSIEERKEQTRNARAEVLRQAKANFEKEERRKELKRLRGEDTWMLPDVNERIEQF 70
Query: 175 IHSVIISKRSKNIKKKLKEEQNSVTENKTKNASHNGKMED 214
+ K+ K K K ++ ++K + N + D
Sbjct: 71 SQEHSVKKKKKKDKHSKKAKKEKKKKSKKQKYEKNNESSD 110
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 128 QAEERQQLESLYKNLRIPL-LGDEEEGSEDEGESTHLLPENENE-----LEKFIHSVIIS 181
+ EE +++E L + GDEEE E+E + E ENE E +
Sbjct: 1024 EEEEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEVEEAENEGEEAKTEGLMKDDRAE 1083
Query: 182 KRSKNIKKKLKEEQNSVTENKTKNA 206
++ ++ +K+ E V+E KT A
Sbjct: 1084 SQASSLGQKVGESSEQVSEEKTNEA 1108
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 128 QAEERQQLESLYKNLRIPL-LGDEEEGSEDEGESTHLLPENENE-----LEKFIHSVIIS 181
+ EE +++E L + GDEEE E+E + E ENE E +
Sbjct: 1040 EEEEDKEMEELQEEKECEKPQGDEEEEEEEEEVEEEEVEEAENEGEEAKTEGLMKDDRAE 1099
Query: 182 KRSKNIKKKLKEEQNSVTENKTKNA 206
++ ++ +K+ E V+E KT A
Sbjct: 1100 SQASSLGQKVGESSEQVSEEKTNEA 1124
>gi|21450721 enkurin [Homo sapiens]
Length = 256
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 145 PLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVTENKTK 204
P+ D+ G + + E + L+P+ N+ + + I KR++ IKK ++ + EN K
Sbjct: 123 PIYVDKRTGDKHDLEPSGLVPKYINKKDYGVTPEYICKRNEEIKKAQEDYDRYIQENLKK 182
Query: 205 NA 206
A
Sbjct: 183 AA 184
>gi|29294627 PTPRF interacting protein binding protein 1 isoform 1
[Homo sapiens]
Length = 1005
Score = 30.4 bits (67), Expect = 1.2
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 131 ERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKK 190
ER Q E K+ + L +E+ E E E L + +++ V I R +N KKK
Sbjct: 220 ERLQYEKKLKSTKDELASLKEQLEEKESEVKRLQEKLVCKMKG--EGVEIVDRDENFKKK 277
Query: 191 LKEEQNSVTENK-------TKNASHNGKMEDL 215
LKE+ V + K N + K+EDL
Sbjct: 278 LKEKNIEVQKMKKAVESLMAANEEKDRKIEDL 309
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 30.4 bits (67), Expect = 1.2
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 151 EEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVTENKTK 204
E+ +++ E L E E ++ + + + KR K +K+L+EE+ + K +
Sbjct: 391 EKDEKEKAEKQRLKEERRKERQEALEAKLEEKRKKEEEKRLREEEKRIKAEKAE 444
>gi|72534680 sex comb on midleg 1 isoform 1 [Homo sapiens]
Length = 660
Score = 30.0 bits (66), Expect = 1.5
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 72 SRSTAASPTNPMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEE 131
S +A++PTN + + RHRP L L S A ++ +C + L + E
Sbjct: 509 SMDSASNPTNLVSTSQ-----RHRPLLSSCGLPPSTASAVRRLCSRGV------LKGSNE 557
Query: 132 RQQLESLYKNLRIP 145
R+ +ES +K R P
Sbjct: 558 RRDMESFWKLNRSP 571
>gi|154354985 hook homolog 2 isoform 1 [Homo sapiens]
Length = 719
Score = 29.6 bits (65), Expect = 2.0
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 116 GMAISYMIYRLAQAEERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFI 175
G+ + + + +E R Q+E L K L+ E+ G ++ S L + E L+K
Sbjct: 498 GLETQHRLNQQQLSELRAQVEDLQKALQ------EQGGKTEDAISILLKRKLEEHLQKLH 551
Query: 176 HSVIISKRSKNIKKKLKEEQNSVTENKTKNASHNGKMED 214
+ + +R + ++L+ +S T + + HN + +D
Sbjct: 552 EADLELQRKREYIEELEPPTDSSTARRIEELQHNLQKKD 590
Score = 27.7 bits (60), Expect = 7.7
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 125 RLAQAE-ERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKR 183
RL AE ER+ E ++N + L E + +DE + E +LE + S +R
Sbjct: 263 RLRCAELEREVAELQHRNQALTSLAQEAQALKDEMDELRQSSERAGQLEATLTS---CRR 319
Query: 184 SKNIKKKLKEEQNSVTENKTKNASHNGKMED 214
++L+ + + E +A ++ED
Sbjct: 320 RLGELRELRRQVRQLEERNAGHAERTRQLED 350
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 29.3 bits (64), Expect = 2.6
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 82 PMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKN 141
P+ F + K IR+ K + + + L+C A ++ + E+ L+S++K+
Sbjct: 1446 PVDFKKIKERIRNH----KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKS 1501
Query: 142 LRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKL-KEEQNSVTE 200
R + +EE SEDE NE E E+ +S +K KL K++ +
Sbjct: 1502 ARQKIAKEEE--SEDE--------SNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDK 1551
Query: 201 NKTKNASHNGK 211
K K + GK
Sbjct: 1552 GKGKKRPNRGK 1562
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 29.3 bits (64), Expect = 2.6
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 82 PMKFLRNKAIIRHRPALVKVILISSVAFSIALICGMAISYMIYRLAQAEERQQLESLYKN 141
P+ F + K IR+ K + + + L+C A ++ + E+ L+S++K+
Sbjct: 1428 PVDFKKIKERIRNH----KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKS 1483
Query: 142 LRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKL-KEEQNSVTE 200
R + +EE SEDE NE E E+ +S +K KL K++ +
Sbjct: 1484 ARQKIAKEEE--SEDE--------SNEEEEEEDEEESESEAKSVKVKIKLNKKDDKGRDK 1533
Query: 201 NKTKNASHNGK 211
K K + GK
Sbjct: 1534 GKGKKRPNRGK 1544
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 130 EERQQLESLYKNLRIPLLGDEEEGSEDEGESTHLLPEN-ENELEKF--IHSVIISKRSKN 186
E +QQ+E L K+L +E+GS+ EGES+ L + E +EK +H + K+ +
Sbjct: 519 ELQQQIEDLQKSL-------QEQGSKSEGESSSKLKQKLEAHMEKLTEVHEE-LQKKQEL 570
Query: 187 IKKKLKEEQNSVTENKTKNASHNGKMEDL 215
I+ + +V + A+ K ED+
Sbjct: 571 IEDLQPDINQNVQKINELEAALQKKDEDM 599
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 29.3 bits (64), Expect = 2.6
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 146 LLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVTENKTKN 205
L+GDEE+ + E + E E EL I + KR IKKKLK + + K K
Sbjct: 186 LMGDEEDRARLEQMTEK---EREQELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKK 242
Query: 206 ASHNGKMEDL 215
+ + L
Sbjct: 243 QEEEQEKKKL 252
>gi|50312664 ubiquitin specific protease 16 isoform b [Homo sapiens]
Length = 822
Score = 28.9 bits (63), Expect = 3.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 140 KNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVT 199
KNL+ + DE++ SE+E ++ + E + I S SK+++KK K++
Sbjct: 401 KNLK-KTVEDEDQDSEEEKDNDSYIKERSD---------IPSGTSKHLQKKAKKQAKKQA 450
Query: 200 ENKTKNASHNGKM 212
+N+ + GK+
Sbjct: 451 KNQRRQQKIQGKV 463
>gi|5454156 ubiquitin specific protease 16 isoform a [Homo sapiens]
Length = 823
Score = 28.9 bits (63), Expect = 3.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 140 KNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVT 199
KNL+ + DE++ SE+E ++ + E + I S SK+++KK K++
Sbjct: 402 KNLK-KTVEDEDQDSEEEKDNDSYIKERSD---------IPSGTSKHLQKKAKKQAKKQA 451
Query: 200 ENKTKNASHNGKM 212
+N+ + GK+
Sbjct: 452 KNQRRQQKIQGKV 464
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 28.9 bits (63), Expect = 3.5
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 129 AEERQQLESLYKNLRI----PLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRS 184
AEE + E+ +NLR+ L +EEE E+E E E ++E +K R
Sbjct: 246 AEEEEDQETPSRNLRVRADRNLKTEEEEEEEEEEEEDDEEEEGDDEGQK--------SRE 297
Query: 185 KNIKKKLKEEQNSVTENK 202
I K+ KEE + K
Sbjct: 298 APILKEFKEEGEEIPRVK 315
>gi|75992941 ubiquitin specific protease 16 isoform a [Homo sapiens]
Length = 823
Score = 28.9 bits (63), Expect = 3.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 140 KNLRIPLLGDEEEGSEDEGESTHLLPENENELEKFIHSVIISKRSKNIKKKLKEEQNSVT 199
KNL+ + DE++ SE+E ++ + E + I S SK+++KK K++
Sbjct: 402 KNLK-KTVEDEDQDSEEEKDNDSYIKERSD---------IPSGTSKHLQKKAKKQAKKQA 451
Query: 200 ENKTKNASHNGKM 212
+N+ + GK+
Sbjct: 452 KNQRRQQKIQGKV 464
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,295,941
Number of Sequences: 37866
Number of extensions: 380258
Number of successful extensions: 2188
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 2133
Number of HSP's gapped (non-prelim): 113
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.