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Search of human proteins with 22748709
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748709 hypothetical protein LOC121793 [Homo sapiens]
(151 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748709 hypothetical protein LOC121793 [Homo sapiens] 305 1e-83
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso... 34 0.054
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso... 34 0.054
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505284 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505280 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505276 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505274 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505272 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505270 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|38505268 voltage-dependent calcium channel alpha 1G subunit i... 33 0.070
gi|98986457 host cell factor 1 [Homo sapiens] 33 0.092
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 32 0.16
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 32 0.16
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 32 0.16
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.20
gi|7657665 zinc finger and BTB domain containing 32 [Homo sapiens] 32 0.27
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] 31 0.46
gi|21040263 transmembrane protein 190 [Homo sapiens] 30 0.78
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 30 1.0
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 1.0
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 30 1.0
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 29 1.3
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 29 1.3
>gi|22748709 hypothetical protein LOC121793 [Homo sapiens]
Length = 151
Score = 305 bits (781), Expect = 1e-83
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MEYVLEVKNSPRHLLKQFTVCDVPLYDICDYNVSRDRCQELGCCFYEGVCYKKAVPIYIH 60
MEYVLEVKNSPRHLLKQFTVCDVPLYDICDYNVSRDRCQELGCCFYEGVCYKKAVPIYIH
Sbjct: 1 MEYVLEVKNSPRHLLKQFTVCDVPLYDICDYNVSRDRCQELGCCFYEGVCYKKAVPIYIH 60
Query: 61 VFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPAS 120
VFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPAS
Sbjct: 61 VFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPAS 120
Query: 121 PGPPSAGPSMKSDEDKDDVTGTITEAEETED 151
PGPPSAGPSMKSDEDKDDVTGTITEAEETED
Sbjct: 121 PGPPSAGPSMKSDEDKDDVTGTITEAEETED 151
>gi|12083581 phosphoinositide-specific phospholipase C beta 1
isoform a [Homo sapiens]
Length = 1216
Score = 33.9 bits (76), Expect = 0.054
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 77 IIYRVIQESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAGPSMKSDEDK 136
++Y+++ +++K+ + + +K SE+A S S +P+SPG A D+D
Sbjct: 458 LMYKILVKNKKKSHKSSEGSGKKKLSEQASNTYSDSSSMFEPSSPGAGEADTESDDDDDD 517
Query: 137 DD 138
DD
Sbjct: 518 DD 519
>gi|33356544 phosphoinositide-specific phospholipase C beta 1
isoform b [Homo sapiens]
Length = 1173
Score = 33.9 bits (76), Expect = 0.054
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 77 IIYRVIQESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAGPSMKSDEDK 136
++Y+++ +++K+ + + +K SE+A S S +P+SPG A D+D
Sbjct: 458 LMYKILVKNKKKSHKSSEGSGKKKLSEQASNTYSDSSSMFEPSSPGAGEADTESDDDDDD 517
Query: 137 DD 138
DD
Sbjct: 518 DD 519
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1815 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1866
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1867 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1902
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1781 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1832
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1833 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1868
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1774 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1825
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1826 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1861
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1781 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1832
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1833 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1868
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1797 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1848
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1849 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1884
>gi|38505284 voltage-dependent calcium channel alpha 1G subunit
isoform 4 [Homo sapiens]
Length = 2332
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1815 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1866
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1867 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1902
>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
isoform 8 [Homo sapiens]
Length = 2284
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1815 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1866
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1867 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1902
>gi|38505280 voltage-dependent calcium channel alpha 1G subunit
isoform 6 [Homo sapiens]
Length = 2306
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1792 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1843
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1844 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1879
>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
isoform 11 [Homo sapiens]
Length = 2261
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1792 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1843
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1844 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1879
>gi|38505276 voltage-dependent calcium channel alpha 1G subunit
isoform 5 [Homo sapiens]
Length = 2321
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1804 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1855
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1856 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1891
>gi|38505274 voltage-dependent calcium channel alpha 1G subunit
isoform 7 [Homo sapiens]
Length = 2298
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1781 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1832
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1833 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1868
>gi|38505272 voltage-dependent calcium channel alpha 1G subunit
isoform 9 [Homo sapiens]
Length = 2273
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1804 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1855
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1856 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1891
>gi|38505270 voltage-dependent calcium channel alpha 1G subunit
isoform 2 [Homo sapiens]
Length = 2354
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1792 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1843
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1844 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1879
>gi|38505268 voltage-dependent calcium channel alpha 1G subunit
isoform 14 [Homo sapiens]
Length = 2171
Score = 33.5 bits (75), Expect = 0.070
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 44 CFYEGVCYKKAV-PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSS 102
C E CY + PIY F + VI ++ + ++ES KE +++
Sbjct: 1781 CDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKE--------AKEEAE 1832
Query: 103 EKAELASSSSKLGLKPASP-GPPSAGPSMKSDEDKD 137
+AEL L +P SP G P P ++ + D
Sbjct: 1833 LEAELELEMKTLSPQPHSPLGSPFLWPGVEGPDSPD 1868
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 33.1 bits (74), Expect = 0.092
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 92 PVDVALPQKSSEKA---ELASSSSKLGLKPASPGPPSAGPSMKSDE 134
PV VA P K A E+A+ LG+KP P PPS P K ++
Sbjct: 1766 PVVVASPAKLQAAATLTEVANGIESLGVKPDLPPPPSKAPMKKENQ 1811
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 32.3 bits (72), Expect = 0.16
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 52 KKAVPIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSS 111
K+AV +I AL+ I + V+ R+EK P PQ S+ E ++
Sbjct: 443 KEAVKSFIETQKALLAEIQNGCKRNL---VLAREREEKEQP-----PQLSASMPETTATE 494
Query: 112 SKLGLKPASP---GPPSAGPSMKSDEDKDDVTGTITEAEETE 150
+ +PA+ G PS PS SD D D G E EE E
Sbjct: 495 PQPDDEPAAGVQNGAPSPAPSPDSDSDSDS-DGEEEEEEEGE 535
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 32.3 bits (72), Expect = 0.16
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 52 KKAVPIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSS 111
K+AV +I AL+ I + V+ R+EK P PQ S+ E ++
Sbjct: 443 KEAVKSFIETQKALLAEIQNGCKRNL---VLAREREEKEQP-----PQLSASMPETTATE 494
Query: 112 SKLGLKPASP---GPPSAGPSMKSDEDKDDVTGTITEAEETE 150
+ +PA+ G PS PS SD D D G E EE E
Sbjct: 495 PQPDDEPAAGVQNGAPSPAPSPDSDSDSDS-DGEEEEEEEGE 535
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 32.3 bits (72), Expect = 0.16
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 52 KKAVPIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSS 111
K+AV +I AL+ I + V+ R+EK P PQ S+ E ++
Sbjct: 443 KEAVKSFIETQKALLAEIQNGCKRNL---VLAREREEKEQP-----PQLSASMPETTATE 494
Query: 112 SKLGLKPASP---GPPSAGPSMKSDEDKDDVTGTITEAEETE 150
+ +PA+ G PS PS SD D D G E EE E
Sbjct: 495 PQPDDEPAAGVQNGAPSPAPSPDSDSDSDS-DGEEEEEEEGE 535
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 32.0 bits (71), Expect = 0.20
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 56 PIYIHVFSALIVIIAGAFVITIIYRVIQESRKEKAIPVDVALPQKSSEKAELASSSSKLG 115
P+ V S + V ++ + I++ + + IP+ L +S A L S + L
Sbjct: 1422 PLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLA 1481
Query: 116 -LKPASPGPPSAGPS 129
+ PA+PGPPS PS
Sbjct: 1482 PVVPAAPGPPSLAPS 1496
>gi|7657665 zinc finger and BTB domain containing 32 [Homo sapiens]
Length = 487
Score = 31.6 bits (70), Expect = 0.27
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 83 QESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAGPSMKSDEDKDDVTGT 142
QE +E+ IP+ + P+ + +LASSS G P P S G +SD+ T
Sbjct: 287 QEVWREQRIPLSLNAPKGLWSQNQLASSSPTPGSLPQGPAQLSPGEMEESDQGHTGALAT 346
Query: 143 ITEAEE 148
E+
Sbjct: 347 CAGHED 352
>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
Length = 1621
Score = 30.8 bits (68), Expect = 0.46
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 84 ESRKEKAIPVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAGPSMKSDEDKDDVTGTI 143
E E+A+ V + + K E +++ P S G PSA K + DD + +
Sbjct: 1279 EGAGEEALTPSVPINKGPKPKREKKEPGTRVRKTPTSSGKPSAKKVKKRNPWSDDESKSE 1338
Query: 144 TEAEETE 150
++ EETE
Sbjct: 1339 SDLEETE 1345
>gi|21040263 transmembrane protein 190 [Homo sapiens]
Length = 177
Score = 30.0 bits (66), Expect = 0.78
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 34 SRDRCQELGCCFYEGVCYKKAVPIYI---HVFSALIVIIAGAFVITIIYRVIQESRKEKA 90
S + C L CC+ GVCY + + H++ AL+ +G +++ + +++
Sbjct: 51 SPNLCLRLRCCYRNGVCYHQRPDENVRRKHMW-ALVWTCSGLLLLSCSICLFWWAKRRDV 109
Query: 91 IPVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAG--PSMKSDEDKDDVTGT----IT 144
+ +P + +++ S S L + PS G P S E +D GT
Sbjct: 110 L----HMPGFLAGPCDMSKSVSLLSKHRGTKKTPSTGSVPVALSKESRDVEGGTEGEGTE 165
Query: 145 EAEETE 150
E EETE
Sbjct: 166 EGEETE 171
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 29.6 bits (65), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 121 PGPPSAGPSMKSDEDKDDVTGTITEAEETED 151
P PP GP MK D+D+D +TG + + D
Sbjct: 158 PPPPPPGP-MKKDKDQDSITGEKVDFSSSSD 187
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 29.6 bits (65), Expect = 1.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 92 PVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAGPSMKSDEDKDDVTGTITEAEETED 151
P D+ P + + +E + + P +P PSA P + E+K++ T EE E+
Sbjct: 770 PEDIPAPTEPTPASEATGAPTP----PPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEE 825
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 29.6 bits (65), Expect = 1.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 92 PVDVALPQKSSEKAELASSSSKLGLKPASPGPPSAGPSMKSDEDKDDVTGTITEAEETED 151
P D+ P + + +E + + P +P PSA P + E+K++ T EE E+
Sbjct: 787 PEDIPAPTEPTPASEATGAPTP----PPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEE 842
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 119 ASPGPPSAGPSMKSDEDKDDVTGTITEAEETE 150
A PGPP + P SD+D DDV G A E
Sbjct: 416 ARPGPPPS-PGAASDDDDDDVVGATPPARLLE 446
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 29.3 bits (64), Expect = 1.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 121 PGPPSAGPSMKSDEDKDDVTGTITEAE 147
P PP GP MK D+D+D +TG E
Sbjct: 158 PPPPPPGP-MKKDKDQDSITGVSENGE 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,014,150
Number of Sequences: 37866
Number of extensions: 258173
Number of successful extensions: 2040
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1994
Number of HSP's gapped (non-prelim): 94
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.