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Search of human proteins with 226823235
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226823235 regenerating islet-derived family, member 4
isoform 2 [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226823235 regenerating islet-derived family, member 4 isoform... 285 1e-77
gi|226823233 regenerating islet-derived family, member 4 isoform... 120 2e-28
gi|14042980 regenerating islet-derived family, member 4 isoform ... 120 2e-28
gi|38372935 brevican isoform 1 [Homo sapiens] 34 0.031
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 32 0.12
gi|169234653 NKG2-D type II integral membrane protein [Homo sapi... 32 0.12
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 32 0.12
gi|30581160 ganglioside-induced differentiation-associated prote... 31 0.26
gi|37577103 C-type lectin-like receptor-1 [Homo sapiens] 31 0.34
gi|153252048 C-type lectin domain family 1, member B isoform b [... 30 0.44
gi|153252029 C-type lectin domain family 1, member B isoform a [... 30 0.44
gi|4502251 asialoglycoprotein receptor 1 [Homo sapiens] 30 0.44
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 30 0.58
gi|37675377 dendritic cell-associated C-type lectin 1 isoform d ... 30 0.58
gi|13384604 dendritic cell-associated C-type lectin 1 isoform b ... 30 0.58
gi|46409282 OTU domain containing 6A [Homo sapiens] 30 0.58
gi|187607300 versican isoform 2 [Homo sapiens] 30 0.76
gi|21361116 versican isoform 1 [Homo sapiens] 30 0.76
gi|111548660 hypothetical protein LOC345222 isoform a [Homo sapi... 29 0.99
gi|111548657 hypothetical protein LOC345222 isoform b [Homo sapi... 29 0.99
gi|4758844 nucleoporin 155kDa isoform 2 [Homo sapiens] 29 1.3
gi|24430149 nucleoporin 155kDa isoform 1 [Homo sapiens] 29 1.3
gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin prote... 29 1.3
gi|7705574 killer cell lectin-like receptor subfamily F, member ... 28 1.7
gi|55953106 phospholipase A2 receptor 1 isoform 2 precursor [Hom... 28 2.2
gi|55953104 phospholipase A2 receptor 1 isoform 1 precursor [Hom... 28 2.2
gi|4505501 oxidized low density lipoprotein (lectin-like) recept... 28 2.2
gi|18426877 asialoglycoprotein receptor 2 isoform c [Homo sapiens] 28 2.2
gi|18426875 asialoglycoprotein receptor 2 isoform b [Homo sapiens] 28 2.2
gi|18426873 asialoglycoprotein receptor 2 isoform a [Homo sapiens] 28 2.2
>gi|226823235 regenerating islet-derived family, member 4 isoform 2
[Homo sapiens]
Length = 134
Score = 285 bits (728), Expect = 1e-77
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEVRNLL 60
MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEVRNLL
Sbjct: 1 MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEVRNLL 60
Query: 61 PAWPGLSRAKDQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNSFNSVSIAEAGA 120
PAWPGLSRAKDQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNSFNSVSIAEAGA
Sbjct: 61 PAWPGLSRAKDQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNSFNSVSIAEAGA 120
Query: 121 VCQTLDGLQAHTDT 134
VCQTLDGLQAHTDT
Sbjct: 121 VCQTLDGLQAHTDT 134
>gi|226823233 regenerating islet-derived family, member 4 isoform
1 [Homo sapiens]
Length = 158
Score = 120 bits (302), Expect = 2e-28
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 1 MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEV 56
MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAE+
Sbjct: 1 MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEL 56
>gi|14042980 regenerating islet-derived family, member 4 isoform 1
[Homo sapiens]
Length = 158
Score = 120 bits (302), Expect = 2e-28
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 1 MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEV 56
MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAE+
Sbjct: 1 MASRSMRLLLLLSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEL 56
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 34.3 bits (77), Expect = 0.031
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 14 CLAKTGVLGDI--IMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEVR 57
CL G GD+ + C PGW + CY +F R+W +AE +
Sbjct: 670 CLCLPGYGGDLCDVGLRFCNPGWDAFQGACYKHFSTRRSWEEAETQ 715
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 32.3 bits (72), Expect = 0.12
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 14 CLAKTGVLGDI--IMRPSCAPGWFYHKSNCYGYFRKLRNWSDAEVR 57
CL G G+ I + C GW ++ +CY +F W DAE R
Sbjct: 2188 CLCPPGYTGEHCNIDQEVCEEGWNKYQGHCYRHFPDRETWVDAERR 2233
>gi|169234653 NKG2-D type II integral membrane protein [Homo
sapiens]
Length = 216
Score = 32.3 bits (72), Expect = 0.12
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAE 55
C W +K+NCY +F + +NW +++
Sbjct: 99 CPKNWICYKNNCYQFFDESKNWYESQ 124
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 32.3 bits (72), Expect = 0.12
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAE 55
C GW + +CY YF R W DAE
Sbjct: 1088 CDRGWHKFQGHCYRYFAHRRAWEDAE 1113
>gi|30581160 ganglioside-induced differentiation-associated protein
1-like 1 [Homo sapiens]
Length = 367
Score = 31.2 bits (69), Expect = 0.26
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 54 AEVRNLLPA----WPGLSRAKDQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNS 109
A NL P WP + D +P + D+ + P H+ + L L W + S
Sbjct: 2 ATPNNLTPTNCSWWPISALESDAAKPAEAPDAPEAASPAHWPRESLVLYHWTQ------S 55
Query: 110 FNS----VSIAEAGAVCQTLD 126
F+S + IAE G VC+ D
Sbjct: 56 FSSQKVRLVIAEKGLVCEERD 76
>gi|37577103 C-type lectin-like receptor-1 [Homo sapiens]
Length = 280
Score = 30.8 bits (68), Expect = 0.34
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAE 55
C W +H NCY +++ ++W D +
Sbjct: 137 CTEQWKWHGDNCYQFYKDSKSWEDCK 162
>gi|153252048 C-type lectin domain family 1, member B isoform b
[Homo sapiens]
Length = 196
Score = 30.4 bits (67), Expect = 0.44
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAE 55
C W Y+ +CYG+FR W +++
Sbjct: 69 CDTNWRYYGDSCYGFFRHNLTWEESK 94
>gi|153252029 C-type lectin domain family 1, member B isoform a
[Homo sapiens]
Length = 229
Score = 30.4 bits (67), Expect = 0.44
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAE 55
C W Y+ +CYG+FR W +++
Sbjct: 102 CDTNWRYYGDSCYGFFRHNLTWEESK 127
>gi|4502251 asialoglycoprotein receptor 1 [Homo sapiens]
Length = 291
Score = 30.4 bits (67), Expect = 0.44
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 12 LSCLAKTGVLGDIIMRPSCAPGWFYHKSNCYGYFRKLRNWSDAE 55
LSC + G+ R C W H+ +CY + R + W+DA+
Sbjct: 137 LSC-QMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADAD 179
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 30.0 bits (66), Expect = 0.58
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAEVR 57
C GW ++ +CY +F W DAE R
Sbjct: 2168 CEEGWNKYQGHCYRHFPDRETWVDAERR 2195
>gi|37675377 dendritic cell-associated C-type lectin 1 isoform d
[Homo sapiens]
Length = 143
Score = 30.0 bits (66), Expect = 0.58
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 9 LLLLSCLAKTGVLGDI-IMRPSCAPGWFYHKSNCYGYFRKLRNWSDAE 55
+L L L VLG + ++ C P W ++ +CY + L +W ++
Sbjct: 52 ILCLVILVIAVVLGTMGVLSSPCPPNWIIYEKSCYLFSMSLNSWDGSK 99
>gi|13384604 dendritic cell-associated C-type lectin 1 isoform b
[Homo sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 0.58
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 9 LLLLSCLAKTGVLGDI-IMRPSCAPGWFYHKSNCYGYFRKLRNWSDAE 55
+L L L VLG + ++ C P W ++ +CY + L +W ++
Sbjct: 52 ILCLVILVIAVVLGTMGVLSSPCPPNWIIYEKSCYLFSMSLNSWDGSK 99
>gi|46409282 OTU domain containing 6A [Homo sapiens]
Length = 288
Score = 30.0 bits (66), Expect = 0.58
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 62 AWPG------LSRAKDQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNSFNSVSI 115
AW G LS P I DS + ++ Y +KP+ LV R + +NSV+
Sbjct: 215 AWGGQLELRALSHVLKTPIEVIQADSPTLIIGEEYVKKPIILVYLRYAYSLGEHYNSVTP 274
Query: 116 AEAGA 120
EAGA
Sbjct: 275 LEAGA 279
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 29.6 bits (65), Expect = 0.76
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 29 SCAPGWFYHKSNCYGYFRKLRNWSDAE 55
+C GW + CY YF R W AE
Sbjct: 427 TCDYGWHKFQGQCYKYFAHRRTWDAAE 453
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 29.6 bits (65), Expect = 0.76
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 29 SCAPGWFYHKSNCYGYFRKLRNWSDAE 55
+C GW + CY YF R W AE
Sbjct: 3168 TCDYGWHKFQGQCYKYFAHRRTWDAAE 3194
>gi|111548660 hypothetical protein LOC345222 isoform a [Homo
sapiens]
Length = 278
Score = 29.3 bits (64), Expect = 0.99
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 46 RKLRNWSDAEVRNLLPAW 63
R+ RNW+DAE+R L+ W
Sbjct: 41 RRARNWTDAEMRGLMLVW 58
>gi|111548657 hypothetical protein LOC345222 isoform b [Homo
sapiens]
Length = 267
Score = 29.3 bits (64), Expect = 0.99
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 46 RKLRNWSDAEVRNLLPAW 63
R+ RNW+DAE+R L+ W
Sbjct: 41 RRARNWTDAEMRGLMLVW 58
>gi|4758844 nucleoporin 155kDa isoform 2 [Homo sapiens]
Length = 1332
Score = 28.9 bits (63), Expect = 1.3
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 33 GWFYHKSNCYGYFRKLRNWSDAEVRNLLPAWPGLSRAKDQPEPQISFDSGSSVLPGHYEE 92
GWF + RK+ N S + + L+P+ + ++D P QI+ D+ ++L E+
Sbjct: 186 GWFSQRC------RKI-NHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEK 238
Query: 93 KPLWLVKWREEGCVFNSFNSVS----IAEAGAVCQTLD 126
+ + ++G + SVS ++ AG + +T+D
Sbjct: 239 GVIQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTID 276
>gi|24430149 nucleoporin 155kDa isoform 1 [Homo sapiens]
Length = 1391
Score = 28.9 bits (63), Expect = 1.3
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 33 GWFYHKSNCYGYFRKLRNWSDAEVRNLLPAWPGLSRAKDQPEPQISFDSGSSVLPGHYEE 92
GWF + RK+ N S + + L+P+ + ++D P QI+ D+ ++L E+
Sbjct: 245 GWFSQRC------RKI-NHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEK 297
Query: 93 KPLWLVKWREEGCVFNSFNSVS----IAEAGAVCQTLD 126
+ + ++G + SVS ++ AG + +T+D
Sbjct: 298 GVIQVYDLGQDGQGMSRVASVSQNAIVSAAGNIARTID 335
>gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin protein
ligase 2 [Homo sapiens]
Length = 1572
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 60 LPAWPGLSRAKDQPEPQISFDSGSSVLPGHYE 91
LPA P + PEPQ S D GS+ L G E
Sbjct: 541 LPAGPAPEEGEGGPEPQPSADQGSAELCGSQE 572
>gi|7705574 killer cell lectin-like receptor subfamily F, member 1
[Homo sapiens]
Length = 231
Score = 28.5 bits (62), Expect = 1.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAEV 56
C W ++ CY + ++++WSD+ V
Sbjct: 114 CQSEWLKYQGKCYWFSNEMKSWSDSYV 140
>gi|55953106 phospholipase A2 receptor 1 isoform 2 precursor [Homo
sapiens]
Length = 1324
Score = 28.1 bits (61), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDA 54
C PGW + NCY ++ + W +A
Sbjct: 378 CEPGWNPYNRNCYKLQKEEKTWHEA 402
>gi|55953104 phospholipase A2 receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 1463
Score = 28.1 bits (61), Expect = 2.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDA 54
C PGW + NCY ++ + W +A
Sbjct: 378 CEPGWNPYNRNCYKLQKEEKTWHEA 402
>gi|4505501 oxidized low density lipoprotein (lectin-like) receptor
1 [Homo sapiens]
Length = 273
Score = 28.1 bits (61), Expect = 2.2
Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 32/131 (24%)
Query: 30 CAPGWFYHKSNCYGYFRKLRNWSDAEVRNL--------------------------LPAW 63
C W +H NCY + NW ++ + L P W
Sbjct: 144 CPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFW 203
Query: 64 PGLSRAKDQPEPQISFDSGSSVLPGHYEEKPLWLVKWREEGCVFNSFNSV----SIAEAG 119
GLSR P ++ GS ++P + + + C + +V I A
Sbjct: 204 MGLSRR--NPSYPWLWEDGSPLMPHLFRVRGAVSQTYPSGTCAYIQRGAVYAENCILAAF 261
Query: 120 AVCQTLDGLQA 130
++CQ L+A
Sbjct: 262 SICQKKANLRA 272
>gi|18426877 asialoglycoprotein receptor 2 isoform c [Homo sapiens]
Length = 292
Score = 28.1 bits (61), Expect = 2.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 27 RPSCAPGWFYHKSNCYGYFRKLRNWSDAE 55
R C W H+ +CY + + W++AE
Sbjct: 155 RTCCPVNWVEHQGSCYWFSHSGKAWAEAE 183
>gi|18426875 asialoglycoprotein receptor 2 isoform b [Homo sapiens]
Length = 287
Score = 28.1 bits (61), Expect = 2.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 27 RPSCAPGWFYHKSNCYGYFRKLRNWSDAE 55
R C W H+ +CY + + W++AE
Sbjct: 150 RTCCPVNWVEHQGSCYWFSHSGKAWAEAE 178
>gi|18426873 asialoglycoprotein receptor 2 isoform a [Homo sapiens]
Length = 311
Score = 28.1 bits (61), Expect = 2.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 27 RPSCAPGWFYHKSNCYGYFRKLRNWSDAE 55
R C W H+ +CY + + W++AE
Sbjct: 174 RTCCPVNWVEHQGSCYWFSHSGKAWAEAE 202
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,667,524
Number of Sequences: 37866
Number of extensions: 248231
Number of successful extensions: 607
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 76
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.