Guide to the Human Genome
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Name: CCDC81 Sequence: fasta or formatted (562aa) NCBI GI: 226528772
Description:

coiled-coil domain containing 81 isoform 2

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [652aa] coiled-coil domain containing 81 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         33           3
 C cysteine            2.0         11           1
 D aspartate           4.4         25           1
 E glutamate          10.3         58           2
 F phenylalanine       3.4         19           1
 G glycine             3.0         17           2
 H histidine           1.8         10           1
 I isoleucine          3.4         19           2
 K lysine              8.7         49           2
 L leucine            11.4         64           2
 M methionine          2.8         16           1
 N asparagine          4.6         26           2
 P proline             4.3         24           2
 Q glutamine           8.4         47           2
 R arginine            9.3         52           3
 S serine              6.2         35           2
 T threonine           3.0         17           1
 V valine              4.3         24           1
 W tryptophan          0.7          4           1
 Y tyrosine            2.1         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 81 isoform 2 
CCDC81                0.833   coiled-coil domain containing 81 isoform 1 
TCHH                  0.041   trichohyalin 
PLEC1                 0.025   plectin 1 isoform 11 
PLEC1                 0.025   plectin 1 isoform 10 
PLEC1                 0.025   plectin 1 isoform 8 
PLEC1                 0.025   plectin 1 isoform 7 
PLEC1                 0.025   plectin 1 isoform 6 
PLEC1                 0.025   plectin 1 isoform 3 
PLEC1                 0.025   plectin 1 isoform 2 
PLEC1                 0.025   plectin 1 isoform 1 
MNS1                  0.025   meiosis-specific nuclear structural 1 
EIF3A                 0.025   eukaryotic translation initiation factor 3, subunit 1...
LOC100133220          0.025   PREDICTED: hypothetical protein 
CGNL1                 0.024   cingulin-like 1 
ITSN1                 0.024   intersectin 1 isoform ITSN-s 
ITSN1                 0.024   intersectin 1 isoform ITSN-l 
DST                   0.024   dystonin isoform 1e precursor 
ZNF853                0.023   zinc finger protein 853 
GOLGA4                0.023   golgi autoantigen, golgin subfamily a, 4 
LOC283685             0.023   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CDC42BPG              0.023   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
LOC400352             0.022   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.022   PREDICTED: similar to Putative golgin subfamily A m...
SMC3                  0.022   structural maintenance of chromosomes 3 
HOOK3                 0.022   golgi-associated microtubule-binding protein HOOK3 [...
CEP152                0.021   centrosomal protein 152kDa 
CEP290                0.021   centrosomal protein 290kDa 
ANKRD62               0.020   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.020   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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