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Search of human proteins with 226437602
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226437602 NK1 homeobox 2 [Homo sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226437602 NK1 homeobox 2 [Homo sapiens] 632 0.0
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 619 e-177
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 619 e-177
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 619 e-177
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 184 7e-47
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 184 7e-47
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 175 5e-44
gi|118582284 msh homeobox 1 [Homo sapiens] 94 2e-19
gi|89257348 homeo box HB9 [Homo sapiens] 93 3e-19
gi|4758168 distal-less homeobox 2 [Homo sapiens] 92 6e-19
gi|157743259 H6 family homeobox 3 [Homo sapiens] 89 5e-18
gi|24497589 aristaless related homeobox [Homo sapiens] 88 8e-18
gi|12707580 paired-like homeobox 2b [Homo sapiens] 88 1e-17
gi|13273315 homeobox B4 [Homo sapiens] 87 2e-17
gi|84570137 homeobox B3 [Homo sapiens] 87 2e-17
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 86 5e-17
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 86 5e-17
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 85 7e-17
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 85 9e-17
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 84 1e-16
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 84 1e-16
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 84 1e-16
gi|24497513 homeobox A3 isoform a [Homo sapiens] 84 2e-16
gi|13562112 homeobox A3 isoform a [Homo sapiens] 84 2e-16
gi|148613882 homeobox A4 [Homo sapiens] 84 2e-16
gi|4502365 NK3 homeobox 2 [Homo sapiens] 84 2e-16
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 82 8e-16
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 81 1e-15
gi|24497538 homeobox C4 [Homo sapiens] 80 2e-15
gi|24497540 homeobox C4 [Homo sapiens] 80 2e-15
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 632 bits (1629), Expect = 0.0
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
Query: 61 SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA 120
SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA
Sbjct: 61 SRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDA 120
Query: 121 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN 180
PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN
Sbjct: 121 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN 180
Query: 181 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGA 240
KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGA
Sbjct: 181 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGA 240
Query: 241 AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPS 300
AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPS
Sbjct: 241 AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPS 300
Query: 301 YLTPFYAPRL 310
YLTPFYAPRL
Sbjct: 301 YLTPFYAPRL 310
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 619 bits (1596), Expect = e-177
Identities = 310/332 (93%), Positives = 310/332 (93%), Gaps = 22/332 (6%)
Query: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
Query: 61 SRDPVRQLETP----------------------DAAGPGAGQASPLEGSEAEEEEDAEDP 98
SRDPVRQLETP DAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61 SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
Query: 99 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 158
RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
Query: 159 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 218
NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
Query: 219 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 278
KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
Query: 279 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 310
AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 619 bits (1596), Expect = e-177
Identities = 310/332 (93%), Positives = 310/332 (93%), Gaps = 22/332 (6%)
Query: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
Query: 61 SRDPVRQLETP----------------------DAAGPGAGQASPLEGSEAEEEEDAEDP 98
SRDPVRQLETP DAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61 SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
Query: 99 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 158
RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
Query: 159 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 218
NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
Query: 219 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 278
KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
Query: 279 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 310
AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 619 bits (1596), Expect = e-177
Identities = 310/332 (93%), Positives = 310/332 (93%), Gaps = 22/332 (6%)
Query: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS
Sbjct: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
Query: 61 SRDPVRQLETP----------------------DAAGPGAGQASPLEGSEAEEEEDAEDP 98
SRDPVRQLETP DAAGPGAGQASPLEGSEAEEEEDAEDP
Sbjct: 61 SRDPVRQLETPGQGFAASLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDP 120
Query: 99 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 158
RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 180
Query: 159 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 218
NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW
Sbjct: 181 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 240
Query: 219 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 278
KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPS 300
Query: 279 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 310
AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL
Sbjct: 301 AASFPLTAAAPGSPFAPFLGPSYLTPFYAPRL 332
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 184 bits (468), Expect = 7e-47
Identities = 153/384 (39%), Positives = 185/384 (48%), Gaps = 84/384 (21%)
Query: 7 GGAKAAPSHHKISFSVLDILDPQKFTR------------------------AALPAVRPA 42
G A+ A SFSVLDILDP KF A PA
Sbjct: 435 GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGR 494
Query: 43 PREA----RKSLAEVEAGKDASSRDP--------VRQLETPDAAG---------PGAGQA 81
P A R++LA G A+ +P + ET D G P A
Sbjct: 495 PPRAEELERRALAGA-GGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 553
Query: 82 SPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA-------------RSPDAPAGALASG 128
+ E ++E++A + R E A GL SP A A+
Sbjct: 554 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 613
Query: 129 EPCED--------GG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFTYEQ 174
P E+ GG GG +P G+ + +P+R+R + KPRRARTAFTYEQ
Sbjct: 614 GPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQ 673
Query: 175 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV-GG 233
LVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A GG
Sbjct: 674 LVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPTGGG 733
Query: 234 GAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFPLTAAA 288
G P PGA G G GG S SP PP L +P++ ++ + F L++ A
Sbjct: 734 GGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPF-LSSPA 792
Query: 289 PGSPFAPFLG-PSYLTP-FYAPRL 310
SPF LG +Y P FYAP L
Sbjct: 793 VLSPFV--LGSQTYGAPAFYAPHL 814
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 184 bits (468), Expect = 7e-47
Identities = 155/387 (40%), Positives = 186/387 (48%), Gaps = 90/387 (23%)
Query: 7 GGAKAAPSHHKISFSVLDILDPQKFTR------------------------AALPAVRPA 42
G A+ A SFSVLDILDP KF A PA
Sbjct: 32 GAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGR 91
Query: 43 PREA----RKSLAEVEAGKDASSRDP--------VRQLETPDAAG---------PGAGQA 81
P A R++LA G A+ +P + ET D G P A
Sbjct: 92 PPRAEELERRALAGA-GGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSG 150
Query: 82 SPLEGSEAEEEEDAEDPRRPRLRERAARLLPGL---------ARSPDAPAGA-------- 124
+ E ++E++A + R E A GL A DA GA
Sbjct: 151 DEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPGATVDEAAAP 210
Query: 125 -------LASGEPCEDGG----GGPVRSPPGSPGSPRPRRRRL--EPNCAKPRRARTAFT 171
+A G P GG GG +P G+ + +P+R+R + KPRRARTAFT
Sbjct: 211 GPRENSPVAQGPP---GGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFT 267
Query: 172 YEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQV 231
YEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD +A
Sbjct: 268 YEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTSAPT 327
Query: 232 -GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSYSAANVLFPSAASFPLT 285
GGG P PGA G G GG S SP PP L +P++ ++ + F L+
Sbjct: 328 GGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGPGGLVCAAQLPF-LS 386
Query: 286 AAAPGSPFAPFLG-PSYLTP-FYAPRL 310
+ A SPF LG +Y P FYAP L
Sbjct: 387 SPAVLSPFV--LGSQTYGAPAFYAPHL 411
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 175 bits (443), Expect = 5e-44
Identities = 114/223 (51%), Positives = 134/223 (60%), Gaps = 21/223 (9%)
Query: 98 PRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRL- 156
P P R+R +P P GA A G G +P G+ + +P+R+R
Sbjct: 38 PEPPSTRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKRTG 89
Query: 157 -EPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRR 215
+ KPRRARTAFTYEQLVALENKF+ATRYLSVCERLNLALSLSLTETQVKIWFQNRR
Sbjct: 90 SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 149
Query: 216 TKWKKQNPGADGAAQV-GGGAPQPGAAGGGG--GGGSGGSPGPPGTGALHFQ---TFPSY 269
TKWKKQNPGAD +A GGG P PGA G G GG S SP PP L +P++
Sbjct: 150 TKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAH 209
Query: 270 SAANVLFPSAASFPLTAAAPGSPFAPFLG-PSYLTP-FYAPRL 310
++ + F L++ A SPF LG +Y P FYAP L
Sbjct: 210 GPGGLVCAAQLPF-LSSPAVLSPFV--LGSQTYGAPAFYAPHL 249
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 93.6 bits (231), Expect = 2e-19
Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%)
Query: 74 AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 129
AG GAGQA + A +EE A+ P L + L R P A ALA E
Sbjct: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84
Query: 130 PCEDGGGG--PVRSPPGSPG---------------------------------------- 147
+ GG P+ PPGS G
Sbjct: 85 GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144
Query: 148 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 195
SP P RR P C R+ RT FT QL+ALE KFR +YLS+ ER
Sbjct: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204
Query: 196 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 239
+ SLSLTETQVKIWFQNRR K K+ P A G + GG P
Sbjct: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261
Query: 240 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 271
A G G+ GP AL Y+A
Sbjct: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 93.2 bits (230), Expect = 3e-19
Identities = 52/106 (49%), Positives = 63/106 (59%), Gaps = 13/106 (12%)
Query: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221
K RR RTAFT +QL+ LE++F+ +YLS +R +A SL LTETQVKIWFQNRR KWK+
Sbjct: 240 KCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRS 299
Query: 222 NPGADGAAQVGGGAPQPGAAGGGGGGGSGGSP--------GPPGTG 259
+ AAQ GGGGG G GG+ GPP G
Sbjct: 300 KKAKEQAAQ-----EAEKQKGGGGGAGKGGAEEPGAEELLGPPAPG 340
Score = 33.5 bits (75), Expect = 0.25
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 236 PQPG--AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAAS 281
P+PG AGGGGGG GG GP H P +AA +AA+
Sbjct: 92 PKPGFLGAGGGGGGTGGGHGGP------HHHAHPGAAAAAAAAAAAAA 133
Score = 29.6 bits (65), Expect = 3.6
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 240 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSP 292
A+G GGGGG GG+ G GT S S A+ P+A + L A +P P
Sbjct: 38 ASGTGGGGGGGGASG--GTSG-------SCSPASSEPPAAPADRLRAESPSPP 81
Score = 29.3 bits (64), Expect = 4.7
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 222 NPGADGAAQVGGGAPQPGA-AGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 280
+PGA AA A G A G GG+ G G P AL+ YSAA A
Sbjct: 118 HPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAG 177
Query: 281 SFP 283
P
Sbjct: 178 QHP 180
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 92.0 bits (227), Expect = 6e-19
Identities = 67/177 (37%), Positives = 88/177 (49%), Gaps = 37/177 (20%)
Query: 145 SPGSPRPRRRRLEPNCA-------KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLA 197
SP + P + LEP K R+ RT ++ QL AL+ +F+ T+YL++ ER LA
Sbjct: 127 SPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 186
Query: 198 LSLSLTETQVKIWFQNRRTKWKK----------QNPGADGA-----------AQVGGGAP 236
SL LT+TQVKIWFQNRR+K+KK Q+PGA + A G P
Sbjct: 187 ASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWDFGVP 246
Query: 237 QPGAAGGG---GGGGSGGSPGPPGTGALHF-QTFPSYSAANVLFPSAASFPLTAAAP 289
Q A GGG GG G+G S P + A F +P Y S ++ L A AP
Sbjct: 247 QRMAGGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQT-----SGSASHLQATAP 298
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 89.0 bits (219), Expect = 5e-18
Identities = 78/254 (30%), Positives = 100/254 (39%), Gaps = 40/254 (15%)
Query: 41 PAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRR 100
P P + K+L + + RD L D SP E EE D+E+ ++
Sbjct: 130 PRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDE--IILEESDSEESKK 187
Query: 101 PRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNC 160
PG A + A A E + G P + P C
Sbjct: 188 E------GEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPA----------------C 225
Query: 161 AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220
K ++ RT F+ Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+
Sbjct: 226 RK-KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 284
Query: 221 QNPGADGAAQVGGGAPQ----------PGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYS 270
Q AA + A Q +A G + G+P P L F YS
Sbjct: 285 QLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYS 344
Query: 271 AANVLFPSAASFPL 284
P +S PL
Sbjct: 345 -----HPVVSSVPL 353
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 88.2 bits (217), Expect = 8e-18
Identities = 86/266 (32%), Positives = 112/266 (42%), Gaps = 32/266 (12%)
Query: 73 AAGPGAG----QASPLEGSEAEEEEDA--EDPRRPRLRERAARLLPGLARSPDAPAGALA 126
AAG G G + LE E E+EE+ ED L + A LL R P A GA+A
Sbjct: 216 AAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDARALLKEPRRCPVAATGAVA 275
Query: 127 SGEPC----EDGGGGPVRS----PPGSPGSPRPRRRRLEPNC--------AKPRRARTAF 170
+ E G P P + G L K RR RT F
Sbjct: 276 AAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTF 335
Query: 171 TYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQ 230
T QL LE F+ T Y V R LA+ L LTE +V++WFQNRR KW+K+
Sbjct: 336 TSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHP 395
Query: 231 VGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAP- 289
G P P +A SP PP AL + +AA FPS P +A+ P
Sbjct: 396 PGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPP 455
Query: 290 -GSP--FAPFLG------PSYLTPFY 306
G+P + FLG P++++P +
Sbjct: 456 SGAPLGLSTFLGAAVFRHPAFISPAF 481
Score = 31.6 bits (70), Expect = 0.94
Identities = 46/183 (25%), Positives = 65/183 (35%), Gaps = 24/183 (13%)
Query: 78 AGQASPLEGSEAEEEEDAEDPRRPRLR-ERAARLLPGLARSPDAPAGALASGEPCEDGGG 136
A Q SP S E E P+ RL RLL G A + A A A A+ G
Sbjct: 63 AVQGSPKSSSAPFEAELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATAGPR 122
Query: 137 GPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNL 196
G +PP P + RP R A A A ++ L +++
Sbjct: 123 G--EAPPPPPPTARPGERPDGAGAAAAAAAAAAAAWDTL-----------------KISQ 163
Query: 197 ALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPP 256
A +S++ ++ ++ + P D GG G GG GS + G
Sbjct: 164 APQVSISRSKS---YRENGAPFVPPPPALDELGGPGGVTHPEERLGVAGGPGSAPAAG-G 219
Query: 257 GTG 259
GTG
Sbjct: 220 GTG 222
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 87.8 bits (216), Expect = 1e-17
Identities = 64/183 (34%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221
K RR RT FT QL LE F T Y + R LAL + LTE +V++WFQNRR K++KQ
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156
Query: 222 NPGADGAA-----------------------------QVGGGAPQP------GAAGGGGG 246
A AA GG P P GA GGGGG
Sbjct: 157 ERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGG 216
Query: 247 G----------GSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPF 296
G G GG G PG G + +AA +AA A PG +AP
Sbjct: 217 GPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPG 276
Query: 297 LGP 299
GP
Sbjct: 277 PGP 279
Score = 29.3 bits (64), Expect = 4.7
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 78 AGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGG 137
A A+ GS ++ + + D + G +P+ A+G GGGG
Sbjct: 162 AAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANG----GGGGG 217
Query: 138 PVRSPPGSPGSPRP 151
P SP G+PG+ P
Sbjct: 218 P--SPAGAPGAAGP 229
Score = 29.3 bits (64), Expect = 4.7
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 71 PDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEP 130
P AAGPG P +G A AA A + A G A+G P
Sbjct: 224 PGAAGPGGPGGEPGKGGAA--------------AAAAAAAAAAAAAAAAAAGGLAAAGGP 269
Query: 131 CED--GGGGPVRSPPGSPGSP 149
+ G GP+ S P S G P
Sbjct: 270 GQGWAPGPGPITSIPDSLGGP 290
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 87.0 bits (214), Expect = 2e-17
Identities = 62/172 (36%), Positives = 83/172 (48%), Gaps = 35/172 (20%)
Query: 112 PGLA-RSP-DAPAGALAS--GEPCEDGGGGPVRSPPG-SPGSPRPRRRR----------- 155
PGL+ R+P PAGAL G+ CE P P +P P P
Sbjct: 87 PGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMR 146
Query: 156 ------LEPNCA--KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 207
+ PN A +P+R+RTA+T +Q++ LE +F RYL+ R+ +A +L L+E Q+
Sbjct: 147 KVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQI 206
Query: 208 KIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTG 259
KIWFQNRR KWKK + P GG G +GG PG P G
Sbjct: 207 KIWFQNRRMKWKKDHK-----------LPNTKIRSGGAAGSAGGPPGRPNGG 247
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 86.7 bits (213), Expect = 2e-17
Identities = 62/179 (34%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 134 GGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCER 193
GGGG +SPPGS S +RARTA+T QLV LE +F RYL R
Sbjct: 174 GGGGGDKSPPGSAAS---------------KRARTAYTSAQLVELEKEFHFNRYLCRPRR 218
Query: 194 LNLALSLSLTETQVKIWFQNRRTKWKKQN-----PGADGAAQVGGGAPQPGAAGGGGGGG 248
+ +A L+L+E Q+KIWFQNRR K+KK + G G PQP + G
Sbjct: 219 VEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNA 278
Query: 249 ------SGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSY 301
S SP PP G H + PS PL + P P Y
Sbjct: 279 LHSMTPSYESPSPPAFGKAHQNAY--------ALPSNYQPPLKGCGAPQKYPPTPAPEY 329
Score = 47.4 bits (111), Expect = 2e-05
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 206 QVKIWFQNRR--TKWKKQNPGAD---GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGA 260
Q+ W + R +K K +PG G GGG G +GGGGGGG GG PPG+ A
Sbjct: 128 QIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAA 187
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 85.5 bits (210), Expect = 5e-17
Identities = 87/302 (28%), Positives = 110/302 (36%), Gaps = 38/302 (12%)
Query: 36 LPAVRPAPREARKSLAEVEAGKDASSRDPVRQLE-----TPDAAGPGAGQASPLEGSEAE 90
LP PA + SLA S + +E T D G A G+
Sbjct: 3 LPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGTFPAE--RGARGA 60
Query: 91 EEEDAE---DPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 147
+E D P P+ E + P A +P A P E G P P P
Sbjct: 61 KERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPA 120
Query: 148 SPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQV 207
+ + E K RR RT FT QL LE F + Y V R LA ++L E +V
Sbjct: 121 TGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRV 180
Query: 208 KIWFQNRRTKWKKQ------------NPGADGAAQVGGGAPQPGAAGGGGGGGSGG---- 251
++WFQNRR KW++Q +P + P AG G GGG G
Sbjct: 181 QVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALP 240
Query: 252 -----SPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTAAAPGSPFAPFLGPSYLTPFY 306
P PG GA Q+ P + P A S P + P P PFL L P
Sbjct: 241 LESWLGPPLPGGGATALQSLPGFG------PPAQSLPASYTPPPPP-PPFLNSPPLGPGL 293
Query: 307 AP 308
P
Sbjct: 294 QP 295
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 85.5 bits (210), Expect = 5e-17
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 31/230 (13%)
Query: 1 MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLAEVEAGKDAS 60
++A GG A+P H + + + +KF LP + A A+ E GK
Sbjct: 104 LMATLPGGFSASPQHQEAAAA-------RKFAPQPLPGGGNFDK-AEALQADAEDGKGFL 155
Query: 61 SRD----PVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLAR 116
+++ ET A+ GA + + S+ E++ P+ +E + L +
Sbjct: 156 AKEGSLLAFSAAETVQASLVGAVRGQGKDESKVEDD--------PKGKEESFSLESDVDY 207
Query: 117 SPDAPAGALASGEPCEDGGGGPVRSPP--GSPGSPRPRRRRLEPNCAKPRRARTAFTYEQ 174
S D A+ + ED G +PP G+ GS + K RR RTAFT EQ
Sbjct: 208 SSDDNLTGQAAHKE-EDPGHALEETPPSSGAAGSTT--------STGKNRRRRTAFTSEQ 258
Query: 175 LVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 224
L+ LE +F +YLS+ ER +A +L L+E QVKIWFQNRR KWK+ G
Sbjct: 259 LLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAG 308
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 85.1 bits (209), Expect = 7e-17
Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 39/147 (26%)
Query: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221
KPR+ARTAFT QL LE F +YLSV +R+ LA SL+LT+TQVK W+QNRRTKWK+Q
Sbjct: 177 KPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQ 236
Query: 222 NP-GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAA 280
G + A+ G +YSA +FPS
Sbjct: 237 TAVGLELLAEAG-----------------------------------NYSALQRMFPSPY 261
Query: 281 SFPLTAAA---PGSPFAPFLGPSYLTP 304
+P + + PG+ + GPS P
Sbjct: 262 FYPQSLVSNLDPGAALYLYRGPSAPPP 288
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 84.7 bits (208), Expect = 9e-17
Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 99 RRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEP 158
R+P + PG+A++ + E GG + S P PR++
Sbjct: 78 RQPTVISHLVPATPGIAQA--LSCHQVTEAVSAEAPGGEALASSESETEQPTPRQK---- 131
Query: 159 NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 218
KPRR+RT FT QL+ LE KF+ +YLS +RL+LA SL LT+ QVK W+QNRR KW
Sbjct: 132 ---KPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKW 188
Query: 219 KK 220
KK
Sbjct: 189 KK 190
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 84.3 bits (207), Expect = 1e-16
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 26 LDPQKFTRAALPAVRPAPREARKSLAEVEAGKDASS----RDPVRQLETPDAAGPGAGQA 81
L P + LP +P P ++ + A + ++S +D + + A P +
Sbjct: 105 LQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSV 164
Query: 82 SPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRS 141
S + +E + RP+L + ++ L + D+ + G E+G R
Sbjct: 165 SSPHHTPKQESNAVHESFRPKLEQEDSKTK--LDKREDSQSDIKCHGTK-EEGD----RE 217
Query: 142 PPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLS 201
S SP R + KPR+ARTAF+ QL LE F +YLSV +R++LA +L+
Sbjct: 218 ITSSRESPPVRAK-------KPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALN 270
Query: 202 LTETQVKIWFQNRRTKWKKQNP-GADGAAQVG 232
LT+TQVK W+QNRRTKWK+Q G + A+ G
Sbjct: 271 LTDTQVKTWYQNRRTKWKRQTAVGLELLAEAG 302
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 84.3 bits (207), Expect = 1e-16
Identities = 93/312 (29%), Positives = 116/312 (37%), Gaps = 105/312 (33%)
Query: 73 AAGPGAGQASPLEGSEAEEEEDAEDP--------RRPRLRERA---------------AR 109
A GAG+A+ +GS +EEED +DP RR RL+ R A
Sbjct: 27 AEAKGAGRATQGDGSREDEEEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARAL 86
Query: 110 LLPGLA----RSPDAPA-------GALASGEPCEDGGGGPVRSP---------------- 142
L PG R P P G A P GG G SP
Sbjct: 87 LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGR 146
Query: 143 -----PGSPGSPRPRRRRLEPNCAKP-------------------------------RRA 166
P PG +R E P ++
Sbjct: 147 AEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKT 206
Query: 167 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 226
RT F+ Q+ LE+ F RYLS ER LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 207 RTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQL---- 262
Query: 227 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPLTA 286
AA++ + P G+ L+ ++ P+ +AA P+ FPL
Sbjct: 263 -AAELEAASLSP-----------PGAQRLVRVPVLYHESPPAAAAAGP--PATLPFPLAP 308
Query: 287 AAPGSPFAPFLG 298
AAP P P LG
Sbjct: 309 AAPAPP-PPLLG 319
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 84.3 bits (207), Expect = 1e-16
Identities = 68/194 (35%), Positives = 86/194 (44%), Gaps = 32/194 (16%)
Query: 33 RAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEE 92
+ A P P P + + GK SS + +LE +AG AG EGS + E
Sbjct: 159 KVAEPPPPPPPHFSETFPSLPAEGKVYSSDE--EKLEA--SAGDPAGSEQEEEGSGGDSE 214
Query: 93 EDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDG--GGGPVRSPPGSPGSPR 150
+D G S GAL +P G G G P + G
Sbjct: 215 DD------------------GFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTA 256
Query: 151 PRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIW 210
P K RR RTAFT EQL+ LE +F +YLS+ ER +A +L L+E QVKIW
Sbjct: 257 PG--------GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIW 308
Query: 211 FQNRRTKWKKQNPG 224
FQNRR KWK+ G
Sbjct: 309 FQNRRAKWKRIKAG 322
Score = 43.1 bits (100), Expect = 3e-04
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 230 QVGGGAPQPGAAGGGGGGGSGGS--------PGPPGTGALHFQTFPSYSAAN--VLFPSA 279
Q GG PG GGGGGGG G + P PP +G L + +P + VL +
Sbjct: 2 QRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL 61
Query: 280 ASFPLTAAAPG-SPFAPFLG 298
A PL A P +P A F G
Sbjct: 62 APAPLPAGLPPLAPLASFAG 81
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 84.0 bits (206), Expect = 2e-16
Identities = 75/243 (30%), Positives = 100/243 (41%), Gaps = 37/243 (15%)
Query: 13 PSHHKISFSVLDILD--PQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLET 70
P H++S + L L P + P + P P +A A P Q
Sbjct: 62 PKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQA--------APPAPQPPQPAPQPPA 113
Query: 71 PD-AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRER--AARLLPGLARSPD---APAGA 124
P AA P ASP + + + A + P L A ++ P + S +
Sbjct: 114 PTPAAPPPPSSASPPQNA-SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSS 172
Query: 125 LASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRA 184
+SGE C +SPPG S +RARTA+T QLV LE +F
Sbjct: 173 SSSGESCAGD-----KSPPGQASS---------------KRARTAYTSAQLVELEKEFHF 212
Query: 185 TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGG 244
RYL R+ +A L+LTE Q+KIWFQNRR K+KK G GG +P G
Sbjct: 213 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
Query: 245 GGG 247
GG
Sbjct: 273 AGG 275
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 84.0 bits (206), Expect = 2e-16
Identities = 75/243 (30%), Positives = 100/243 (41%), Gaps = 37/243 (15%)
Query: 13 PSHHKISFSVLDILD--PQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLET 70
P H++S + L L P + P + P P +A A P Q
Sbjct: 62 PKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQA--------APPAPQPPQPAPQPPA 113
Query: 71 PD-AAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRER--AARLLPGLARSPD---APAGA 124
P AA P ASP + + + A + P L A ++ P + S +
Sbjct: 114 PTPAAPPPPSSASPPQNA-SNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSS 172
Query: 125 LASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRA 184
+SGE C +SPPG S +RARTA+T QLV LE +F
Sbjct: 173 SSSGESCAGD-----KSPPGQASS---------------KRARTAYTSAQLVELEKEFHF 212
Query: 185 TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGG 244
RYL R+ +A L+LTE Q+KIWFQNRR K+KK G GG +P G
Sbjct: 213 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
Query: 245 GGG 247
GG
Sbjct: 273 AGG 275
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 84.0 bits (206), Expect = 2e-16
Identities = 73/254 (28%), Positives = 99/254 (38%), Gaps = 25/254 (9%)
Query: 28 PQKFTRAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGS 87
P+ A PA P A + +S Q E P A G P G
Sbjct: 76 PRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPPAQAKG-----PAHGL 130
Query: 88 EAEE--EEDAEDPRRPRLRERAA-RLLPGLARSPDAPAGALASGEPCEDGGGGPV----R 140
A + P +PR AA R +P PAG A P P+ +
Sbjct: 131 HASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGK 190
Query: 141 SPPGSPGSPRPRRRRLEP--NCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLAL 198
P P + + P N +P+R+RTA+T +Q++ LE +F RYL+ R+ +A
Sbjct: 191 EPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAH 250
Query: 199 SLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGT 258
+L L+E QVKIWFQNRR KWKK + P S G PG T
Sbjct: 251 TLCLSERQVKIWFQNRRMKWKKDHK-----------LPNTKMRSSNSASASAGPPGKAQT 299
Query: 259 GALHFQTFPSYSAA 272
+ H P S +
Sbjct: 300 QSPHLHPHPHPSTS 313
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 83.6 bits (205), Expect = 2e-16
Identities = 66/189 (34%), Positives = 86/189 (45%), Gaps = 35/189 (18%)
Query: 45 EARKSLAEVEAGKDASSRDPVRQLE-TPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRL 103
+AR + AG S PV +L + D AG+ S++E R PR
Sbjct: 109 DARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGR------SDSEMSASVSGDRSPRT 162
Query: 104 RERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPG------SPGSPRPRRRRLE 157
+ P GA S C GGG P G P +P+PR++R
Sbjct: 163 EDDGV-----------GPRGAHVSAL-CSGAGGGGGSGPAGVAEEEEEPAAPKPRKKR-- 208
Query: 158 PNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTK 217
+R AF++ Q+ LE +F RYLS ER +LA SL LTETQVKIWFQNRR K
Sbjct: 209 --------SRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYK 260
Query: 218 WKKQNPGAD 226
K++ AD
Sbjct: 261 TKRRQMAAD 269
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 81.6 bits (200), Expect = 8e-16
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 149 PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVK 208
P+PR RR + R F+ Q+ LE +F+ RYLS ER +LA SL LT TQVK
Sbjct: 143 PKPRSRR---------KPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVK 193
Query: 209 IWFQNRRTKWKKQNPGADGAAQVGGGAPQP-------------GAAGGGGGGGSGGSPGP 255
IWFQNRR K K+Q D + ++G AP P G + G+P
Sbjct: 194 IWFQNRRYKCKRQR--QDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYS 251
Query: 256 PGTGALHFQTFPSYSAANVLFPSAASFPLTAAA 288
G A + +FP+Y N +AA+ AAA
Sbjct: 252 VGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAA 284
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 81.3 bits (199), Expect = 1e-15
Identities = 75/235 (31%), Positives = 101/235 (42%), Gaps = 30/235 (12%)
Query: 80 QASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPV 139
Q SP + S E A+DP L LP P PAG P +G V
Sbjct: 59 QGSPPDISPYEVPPLADDPAVAHLHHH----LPAQLALPHPPAG------PFPEGAEPGV 108
Query: 140 RSPPGSPGSPRPRRRRLEPNC-----------AKP---RRARTAFTYEQLVALENKFRAT 185
P P P + + + A+P +R RTA+T QL+ LE +F
Sbjct: 109 LEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFN 168
Query: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK-QNPGADGAAQVGGGA---PQPGAA 241
+Y+S R+ LA+ L+LTE +KIWFQNRR KWKK ++ G VGGG P+ A
Sbjct: 169 KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCA 228
Query: 242 GGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPL-TAAAPGSPFAP 295
G P PP GA+ P + L P ++ P ++ AP P P
Sbjct: 229 VTSGEELLALPPPPPPGGAVP-PAAPVAAREGRLPPGLSASPQPSSVAPRRPQEP 282
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 80.5 bits (197), Expect = 2e-15
Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 118 PDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRP---------RRRRLEPNC--AKPRRA 166
P +GA AS P P P S S +P + PN +P+R+
Sbjct: 100 PAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159
Query: 167 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 226
RTA+T +Q++ LE +F RYL+ R+ +A SL L+E Q+KIWFQNRR KWKK + +
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
Query: 227 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQT 265
+ AP GAA S S PGT H Q+
Sbjct: 220 TKVR---SAPPAGAA------PSTLSAATPGTSEDHSQS 249
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 80.5 bits (197), Expect = 2e-15
Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 118 PDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRP---------RRRRLEPNC--AKPRRA 166
P +GA AS P P P S S +P + PN +P+R+
Sbjct: 100 PAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159
Query: 167 RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAD 226
RTA+T +Q++ LE +F RYL+ R+ +A SL L+E Q+KIWFQNRR KWKK + +
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
Query: 227 GAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALHFQT 265
+ AP GAA S S PGT H Q+
Sbjct: 220 TKVR---SAPPAGAA------PSTLSAATPGTSEDHSQS 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,615,638
Number of Sequences: 37866
Number of extensions: 1079255
Number of successful extensions: 29289
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 751
Number of HSP's that attempted gapping in prelim test: 10314
Number of HSP's gapped (non-prelim): 14347
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.