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Search of human proteins with 226342943
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226342943 zinc finger, DHHC-type containing 15 isoform 3
[Homo sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226342943 zinc finger, DHHC-type containing 15 isoform 3 [Hom... 298 8e-82
gi|226342941 zinc finger, DHHC-type containing 15 isoform 2 [Hom... 248 9e-67
gi|21450653 zinc finger, DHHC-type containing 15 isoform 1 [Homo... 241 2e-64
gi|7705949 zinc finger, DHHC-type containing 2 [Homo sapiens] 124 3e-29
gi|49457851 zinc finger, DHHC-type containing 20 [Homo sapiens] 123 6e-29
gi|110611231 chloride channel accessory 1 precursor [Homo sapiens] 30 0.90
gi|21359846 prospero homeobox 1 [Homo sapiens] 29 1.2
gi|4885057 apelin receptor [Homo sapiens] 28 3.4
gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A... 28 3.4
gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A... 28 3.4
gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A... 28 3.4
gi|239743654 PREDICTED: similar to block of proliferation 1 [Hom... 27 4.4
gi|21327667 block of proliferation 1 [Homo sapiens] 27 4.4
gi|40217825 slit and trk like 6 [Homo sapiens] 27 4.4
gi|4502889 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens] 27 5.8
gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens] 27 5.8
gi|169210316 PREDICTED: hypothetical protein [Homo sapiens] 27 5.8
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 26 9.9
gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo ... 26 9.9
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 26 9.9
gi|239749085 PREDICTED: hypothetical protein XP_002346899, parti... 26 9.9
gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo ... 26 9.9
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 26 9.9
gi|239743111 PREDICTED: hypothetical protein XP_002342756, parti... 26 9.9
gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo ... 26 9.9
>gi|226342943 zinc finger, DHHC-type containing 15 isoform 3 [Homo
sapiens]
Length = 143
Score = 298 bits (764), Expect = 8e-82
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFT 60
MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFT
Sbjct: 1 MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFT 60
Query: 61 WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGGQF 120
WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGGQF
Sbjct: 61 WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGGQF 120
Query: 121 IQRQLERQLSKYLRKAKSYMFSN 143
IQRQLERQLSKYLRKAKSYMFSN
Sbjct: 121 IQRQLERQLSKYLRKAKSYMFSN 143
>gi|226342941 zinc finger, DHHC-type containing 15 isoform 2 [Homo
sapiens]
Length = 328
Score = 248 bits (634), Expect = 9e-67
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFT 60
MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFT
Sbjct: 1 MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFT 60
Query: 61 WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSG 117
WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSG
Sbjct: 61 WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSG 117
>gi|21450653 zinc finger, DHHC-type containing 15 isoform 1 [Homo
sapiens]
Length = 337
Score = 241 bits (614), Expect = 2e-64
Identities = 117/126 (92%), Positives = 117/126 (92%), Gaps = 9/126 (7%)
Query: 1 MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLV---------IYLIL 51
MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLV IYLIL
Sbjct: 1 MRRGWKMALSGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVTVLSPAEKVIYLIL 60
Query: 52 YHAIFVFFTWTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVY 111
YHAIFVFFTWTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVY
Sbjct: 61 YHAIFVFFTWTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVY 120
Query: 112 TRTGSG 117
TRTGSG
Sbjct: 121 TRTGSG 126
>gi|7705949 zinc finger, DHHC-type containing 2 [Homo sapiens]
Length = 367
Score = 124 bits (311), Expect = 3e-29
Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 9/117 (7%)
Query: 10 SGGLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLV---------IYLILYHAIFVFFT 60
S R CRRVL W+PV+ I L++ WSYYAY +LC+V + L+ YH +F F
Sbjct: 8 SSARRRCRRVLYWIPVVFITLLLGWSYYAYAIQLCIVSMENTGEQVVCLMAYHLLFAMFV 67
Query: 61 WTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSG 117
W+YWK+IFTLP P+++FHLSY +K+ E E R E +++L AK LP+YTRT SG
Sbjct: 68 WSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLPIYTRTMSG 124
>gi|49457851 zinc finger, DHHC-type containing 20 [Homo sapiens]
Length = 354
Score = 123 bits (308), Expect = 6e-29
Identities = 56/115 (48%), Positives = 77/115 (66%), Gaps = 12/115 (10%)
Query: 14 RCCRRVLSWVPVLVIVLVVLWSYYAYVFELCL------------VIYLILYHAIFVFFTW 61
RCC+RV+ WVPVL I VV+WSYYAYV ELC+ V+YL+ +H FV F W
Sbjct: 8 RCCQRVVGWVPVLFITFVVVWSYYAYVVELCVFTIFGNEENGKTVVYLVAFHLFFVMFVW 67
Query: 62 TYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGS 116
+YW +IFT P P+++F+LS ++KERYE E E Q+++L A+ LP+YT + S
Sbjct: 68 SYWMTIFTSPASPSKEFYLSNSEKERYEKEFSQERQQEILRRAARALPIYTTSAS 122
>gi|110611231 chloride channel accessory 1 precursor [Homo sapiens]
Length = 914
Score = 29.6 bits (65), Expect = 0.90
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 70 LPQQPNQKFHLSYTDKERYE-NEERPEVQKQMLVDMAKKLPVYTRTGSGGQFI 121
+PQQ + + + + + N RPE+ K D+ K ++RT SGG F+
Sbjct: 689 IPQQSGALYIPGWIENDEIQWNPPRPEINKD---DVQHKQVCFSRTSSGGSFV 738
>gi|21359846 prospero homeobox 1 [Homo sapiens]
Length = 737
Score = 29.3 bits (64), Expect = 1.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 70 LPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKL 108
LPQQ Q F + ++ + EER ++ KQ L DM K+L
Sbjct: 213 LPQQQQQSFQQLVSARKEQKREERRQL-KQQLEDMQKQL 250
>gi|4885057 apelin receptor [Homo sapiens]
Length = 380
Score = 27.7 bits (60), Expect = 3.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 12 GLRCCRRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFF 59
GLR RR+LS + VLV+ + W Y V L ++ L+ + F F
Sbjct: 239 GLRKRRRLLSIIVVLVVTFALCWMPYHLVKTLYMLGSLLHWPCDFDLF 286
>gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 1 [Homo sapiens]
Length = 243
Score = 27.7 bits (60), Expect = 3.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 26 LVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFTWTYWKSI 67
+V +L+ L S + +C+ H IFV+ +T W S+
Sbjct: 72 VVRILIALMSLSMGIIMMCVAFSSYEEHPIFVYVAYTIWGSV 113
>gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 3 [Homo sapiens]
Length = 243
Score = 27.7 bits (60), Expect = 3.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 26 LVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFTWTYWKSI 67
+V +L+ L S + +C+ H IFV+ +T W S+
Sbjct: 72 VVRILIALMSLSMGIIMMCVAFSSYEEHPIFVYVAYTIWGSV 113
>gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 3 [Homo sapiens]
Length = 243
Score = 27.7 bits (60), Expect = 3.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 26 LVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFTWTYWKSI 67
+V +L+ L S + +C+ H IFV+ +T W S+
Sbjct: 72 VVRILIALMSLSMGIIMMCVAFSSYEEHPIFVYVAYTIWGSV 113
>gi|239743654 PREDICTED: similar to block of proliferation 1 [Homo
sapiens]
Length = 668
Score = 27.3 bits (59), Expect = 4.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 74 PNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGGQFIQRQLERQLSKYL 133
P ++ LS ++ +E +E E + L + +K P + G+FIQ + ER L YL
Sbjct: 238 PPPEYLLSEEERLAWEQQEPGE---RKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYL 294
>gi|21327667 block of proliferation 1 [Homo sapiens]
Length = 746
Score = 27.3 bits (59), Expect = 4.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 74 PNQKFHLSYTDKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGGQFIQRQLERQLSKYL 133
P ++ LS ++ +E +E E + L + +K P + G+FIQ + ER L YL
Sbjct: 316 PPPEYLLSEEERLAWEQQEPGE---RKLSFLPRKFPSLRAVPAYGRFIQERFERCLDLYL 372
>gi|40217825 slit and trk like 6 [Homo sapiens]
Length = 841
Score = 27.3 bits (59), Expect = 4.4
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 17 RRVLSWVPVLVIVLVVLWSYYAYVFELCLVIYLILYHAIFVFFTWTYWKSIFTLPQQPNQ 76
R + VP+ V++L +L + VF ++ L+L+ Y K + N
Sbjct: 599 RSLTDAVPLSVLILGLLIMFITIVFCAAGIVVLVLHR------RRRYKKKQVDEQMRDNS 652
Query: 77 KFHLSYT---DKERYENEERPEVQKQMLVDMAKKLPVYTRTGSGGQFIQRQLER 127
HL Y+ K + ERP ++ + VY G + ++ + ER
Sbjct: 653 PVHLQYSMYGHKTTHHTTERPSASLYEQHMVSPMVHVYRSPSFGPKHLEEEEER 706
>gi|4502889 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
Length = 438
Score = 26.9 bits (58), Expect = 5.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 8 ALSGGLRCCRRVLSWVPVLV----IVLVVLWSYYAYVFELCLVIYLILYHAI 55
A LRCCR +W L+ +V ++ ++ ++ + LV +ILY +
Sbjct: 332 ASRSSLRCCRIRFTWALALLQCLNLVFLLADVWFGFLPSIYLVFLIILYEGL 383
>gi|109698601 ceroid-lipofuscinosis, neuronal 3 [Homo sapiens]
Length = 438
Score = 26.9 bits (58), Expect = 5.8
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 8 ALSGGLRCCRRVLSWVPVLV----IVLVVLWSYYAYVFELCLVIYLILYHAI 55
A LRCCR +W L+ +V ++ ++ ++ + LV +ILY +
Sbjct: 332 ASRSSLRCCRIRFTWALALLQCLNLVFLLADVWFGFLPSIYLVFLIILYEGL 383
>gi|169210316 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 26.9 bits (58), Expect = 5.8
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 18 RVLSWVPVLVIVLVVLWSY-----YAYVFELCLVIYLILYHAIFVF 58
R+ ++ + V + + ++ Y Y YV+ +C+ +Y+ +Y I+V+
Sbjct: 243 RMYMYICIYVYMYICIYVYVCIYVYIYVY-MCIYVYICIYMCIYVY 287
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 26.2 bits (56), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 98 KQMLVDMAKKLPVYTRTGSGGQFIQRQLERQL 129
++ L+ MA+ L R GSGG RQL ++L
Sbjct: 111 RKRLISMAEALRFRLRAGSGGTLELRQLFKEL 142
>gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 26.2 bits (56), Expect = 9.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 64 WKSIFTLPQQPNQKFHLSYTDKERY--ENEERPEVQKQMLVDMAKKLP 109
W+ IF + ++ N + +SY K + E E + + KQML D P
Sbjct: 264 WRPIFNILKEKNFQPRISYAAKLSFISEGEIKYFIDKQMLRDFVTTRP 311
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 26.2 bits (56), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 98 KQMLVDMAKKLPVYTRTGSGGQFIQRQLERQL 129
++ L+ MA+ L R GSGG RQL ++L
Sbjct: 111 RKRLISMAEALRFRLRAGSGGTLELRQLFKEL 142
>gi|239749085 PREDICTED: hypothetical protein XP_002346899,
partial [Homo sapiens]
Length = 108
Score = 26.2 bits (56), Expect = 9.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 19 VLSWVPVLVIVLVVLWSY-YAYV-----FELCLVIYLILYHAIFVF---FTWTY 63
V ++ + V V V ++ Y YAY+ C+ +Y+ +Y I+ + +T+TY
Sbjct: 15 VYVYICIYVYVYVCIYVYVYAYICICVYMYTCICVYVFMYIYIYTYTHIYTYTY 68
>gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 26.2 bits (56), Expect = 9.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 64 WKSIFTLPQQPNQKFHLSYTDKERY--ENEERPEVQKQMLVDMAKKLP 109
W+ IF + ++ N + +SY K + E E + + KQML D P
Sbjct: 264 WRPIFNILKEKNFQPRISYAAKLSFISEGEIKYFIDKQMLRDFVTTRP 311
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 26.2 bits (56), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 98 KQMLVDMAKKLPVYTRTGSGGQFIQRQLERQL 129
++ L+ MA+ L R GSGG RQL ++L
Sbjct: 111 RKRLISMAEALRFRLRAGSGGTLELRQLFKEL 142
>gi|239743111 PREDICTED: hypothetical protein XP_002342756,
partial [Homo sapiens]
Length = 108
Score = 26.2 bits (56), Expect = 9.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 19 VLSWVPVLVIVLVVLWSY-YAYV-----FELCLVIYLILYHAIFVF---FTWTY 63
V ++ + V V V ++ Y YAY+ C+ +Y+ +Y I+ + +T+TY
Sbjct: 15 VYVYICIYVYVYVCIYVYVYAYICICVYMYTCICVYVFMYIYIYTYTHIYTYTY 68
>gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo
sapiens]
Length = 338
Score = 26.2 bits (56), Expect = 9.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 64 WKSIFTLPQQPNQKFHLSYTDKERY--ENEERPEVQKQMLVDMAKKLP 109
W+ IF + ++ N + +SY K + E E + + KQML D P
Sbjct: 264 WRPIFNILKEKNFQPRISYAAKLSFISEGEIKYFIDKQMLRDFVTTRP 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,242,990
Number of Sequences: 37866
Number of extensions: 206723
Number of successful extensions: 963
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 27
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.