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Name: CLN3 Sequence: fasta or formatted (438aa) NCBI GI: 109698601
Description:

ceroid-lipofuscinosis, neuronal 3

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt mRNA [438aa] ceroid-lipofuscinosis, neuronal 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         39           2
 C cysteine            2.3         10           2
 D aspartate           2.5         11           1
 E glutamate           4.3         19           3
 F phenylalanine       5.7         25           2
 G glycine             8.2         36           2
 H histidine           2.7         12           1
 I isoleucine          4.1         18           2
 K lysine              1.1          5           1
 L leucine            16.7         73           3
 M methionine          1.1          5           1
 N asparagine          2.5         11           2
 P proline             5.0         22           1
 Q glutamine           3.2         14           2
 R arginine            4.1         18           3
 S serine             11.2         49           4
 T threonine           4.6         20           1
 V valine              6.2         27           3
 W tryptophan          2.3         10           2
 Y tyrosine            3.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ceroid-lipofuscinosis, neuronal 3 
CLN3                  1.000   ceroid-lipofuscinosis, neuronal 3 
SLC29A2               0.013   solute carrier family 29 (nucleoside transporters), ...
BIRC6                 0.009   baculoviral IAP repeat-containing 6 
DLG4                  0.008   post-synaptic density protein 95 isoform 1 
MICAL3                0.008   microtubule associated monoxygenase, calponin and L...
SLC43A2               0.008   solute carrier family 43, member 2 
LOC100288131          0.007   PREDICTED: hypothetical protein 
LOC100288131          0.007   PREDICTED: hypothetical protein XP_002343331 
PCDH15                0.007   protocadherin 15 isoform CD2-1 precursor 
SASH1                 0.006   SAM and SH3 domain containing 1 
STARD3NL              0.006   MLN64 N-terminal homolog 
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.005   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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