Guide to the Human Genome
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Name: HPGD Sequence: fasta or formatted (178aa) NCBI GI: 224922801
Description:

hydroxyprostaglandin dehydrogenase 15-(NAD) isoform 2

Referenced in:

Alcohol and Aldehyde Dehydrogenases
Arachidonate, Prostaglandins, and Leukotrienes

Other entries for this name:
alt prot [266aa] hydroxyprostaglandin dehydrogenase 15-(NAD) isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         18           2
 C cysteine            2.2          4           1
 D aspartate           5.6         10           1
 E glutamate           3.9          7           1
 F phenylalanine       3.4          6           1
 G glycine             9.6         17           2
 H histidine           2.2          4           1
 I isoleucine          6.2         11           3
 K lysine              5.6         10           1
 L leucine             9.6         17           3
 M methionine          2.2          4           1
 N asparagine          6.2         11           2
 P proline             2.2          4           1
 Q glutamine           7.3         13           3
 R arginine            2.8          5           1
 S serine              3.9          7           2
 T threonine           4.5          8           1
 V valine              9.0         16           2
 W tryptophan          1.7          3           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform... 
HPGD                  0.913   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform ...
CBR4                  0.197   carbonic reductase 4 
HSD17B14              0.179   dehydrogenase/reductase (SDR family) member 10 [Homo...
HSD17B10              0.143   hydroxysteroid (17-beta) dehydrogenase 10 isoform 2 ...
HSD17B10              0.143   hydroxysteroid (17-beta) dehydrogenase 10 isoform 1 [...
HSD17B11              0.131   estradiol 17-beta-dehydrogenase 11 
DHRS2                 0.131   dehydrogenase/reductase member 2 isoform 2 
DHRS2                 0.131   dehydrogenase/reductase member 2 isoform 1 
BDH2                  0.131   3-hydroxybutyrate dehydrogenase, type 2 
PECR                  0.128   peroxisomal trans-2-enoyl-CoA reductase 
DHRS11                0.125   short-chain dehydrogenase/reductase 
HSD17B8               0.119   estradiol 17 beta-dehydrogenase 8 
RDH10                 0.119   retinol dehydrogenase 10 
DHRS7                 0.119   dehydrogenase/reductase (SDR family) member 7 
HSD17B4               0.116   hydroxysteroid (17-beta) dehydrogenase 4 
HSD17B12              0.116   hydroxysteroid (17-beta) dehydrogenase 12 
DHRS4                 0.113   peroxisomal short-chain alcohol dehydrogenase 
SDR16C5               0.104   epidermal retinal dehydrogenase 2 
DHRS7C                0.101   dehydrogenase/reductase (SDR family) member 7C [Hom...
HSD17B3               0.099   estradiol 17 beta-dehydrogenase 3 
DHRS7B                0.099   dehydrogenase/reductase (SDR family) member 7B [Homo...
SDR16C6               0.099   short chain dehydrogenase/reductase family 16C, mem...
DHRS4L2               0.099   dehydrogenase/reductase (SDR family) member 4 like ...
RDH13                 0.093   retinol dehydrogenase 13 isoform 1 
KDSR                  0.087   3-ketodihydrosphingosine reductase precursor 
HSD17B13              0.087   hydroxysteroid (17-beta) dehydrogenase 13 isoform A...
HSDL2                 0.087   hydroxysteroid dehydrogenase like 2 
RDH11                 0.084   retinol dehydrogenase 11 
SDR9C7                0.081   short chain dehydrogenase/reductase family 9C, membe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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