Search of human proteins with 223890278

Search of human proteins with 223890278

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223890278 nuclear receptor coactivator 4 isoform 1 [Homo
sapiens]
         (650 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223890278 nuclear receptor coactivator 4 isoform 1 [Homo sapi...  1342   0.0  
gi|223890281 nuclear receptor coactivator 4 isoform 2 [Homo sapi...  1296   0.0  
gi|14149617 nuclear receptor coactivator 4 isoform 3 [Homo sapiens]  1267   0.0  
gi|223890287 nuclear receptor coactivator 4 isoform 3 [Homo sapi...  1267   0.0  
gi|223890284 nuclear receptor coactivator 4 isoform 3 [Homo sapi...  1267   0.0  
gi|84993742 tripartite motif-containing 71 [Homo sapiens]              38   0.026
gi|56711324 HAUS augmin-like complex, subunit 3 [Homo sapiens]         36   0.13 
gi|126362971 serine/threonine kinase 10 [Homo sapiens]                 36   0.13 
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               35   0.22 
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               35   0.22 
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               35   0.22 
gi|119120894 Dmx-like 2 [Homo sapiens]                                 33   0.63 
gi|34577114 cytomatrix protein p110 [Homo sapiens]                     33   0.63 
gi|56676397 ankyrin repeat domain 11 [Homo sapiens]                    33   0.63 
gi|4504169 glutathione synthetase [Homo sapiens]                       33   1.1  
gi|23503243 Ras association (RalGDS/AF-6) domain family (N-termi...    33   1.1  
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     32   2.4  
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap...    31   3.1  
gi|32454739 tripartite motif-containing 3 [Homo sapiens]               31   3.1  
gi|32454737 tripartite motif-containing 3 [Homo sapiens]               31   3.1  
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]            31   3.1  
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]            31   3.1  
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]            31   3.1  
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]      31   4.1  
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]        31   4.1  
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]        31   4.1  
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]        31   4.1  
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]      31   4.1  
gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens]        31   4.1  
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]    31   4.1  

>gi|223890278 nuclear receptor coactivator 4 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 1342 bits (3473), Expect = 0.0
 Identities = 650/650 (100%), Positives = 650/650 (100%)

Query: 1   MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN 60
           MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN
Sbjct: 1   MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN 60

Query: 61  LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH 120
           LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH
Sbjct: 61  LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH 120

Query: 121 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE 180
           QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE
Sbjct: 121 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE 180

Query: 181 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP 240
           HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP
Sbjct: 181 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP 240

Query: 241 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE 300
           QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE
Sbjct: 241 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE 300

Query: 301 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT 360
           MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT
Sbjct: 301 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT 360

Query: 361 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC 420
           DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC
Sbjct: 361 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC 420

Query: 421 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR 480
           RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR
Sbjct: 421 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR 480

Query: 481 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK 540
           KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK
Sbjct: 481 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK 540

Query: 541 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH 600
           SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH
Sbjct: 541 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH 600

Query: 601 YGLPAVCDLFACMQLKVDKEKWLYRTPLQAYFKMNFQDVTVGNFQIPCGF 650
           YGLPAVCDLFACMQLKVDKEKWLYRTPLQAYFKMNFQDVTVGNFQIPCGF
Sbjct: 601 YGLPAVCDLFACMQLKVDKEKWLYRTPLQAYFKMNFQDVTVGNFQIPCGF 650


>gi|223890281 nuclear receptor coactivator 4 isoform 2 [Homo
           sapiens]
          Length = 630

 Score = 1296 bits (3355), Expect = 0.0
 Identities = 629/629 (100%), Positives = 629/629 (100%)

Query: 1   MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN 60
           MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN
Sbjct: 1   MGAQLTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDN 60

Query: 61  LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH 120
           LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH
Sbjct: 61  LREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTH 120

Query: 121 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE 180
           QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE
Sbjct: 121 QLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPE 180

Query: 181 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP 240
           HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP
Sbjct: 181 HLMAHASSANIGPFLEKRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDP 240

Query: 241 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE 300
           QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE
Sbjct: 241 QDWLTQKQTLENSQTSSRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIE 300

Query: 301 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT 360
           MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT
Sbjct: 301 MEKVGDQELPDQDEMDLSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKT 360

Query: 361 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC 420
           DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC
Sbjct: 361 DSCTNCQGNQPKGVEIENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVC 420

Query: 421 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR 480
           RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR
Sbjct: 421 RANEPCTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPR 480

Query: 481 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK 540
           KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK
Sbjct: 481 KEVIEQTKAPKAMTPSRIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFK 540

Query: 541 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH 600
           SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH
Sbjct: 541 SPMNTSWCSFNTADWVLPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDH 600

Query: 601 YGLPAVCDLFACMQLKVDKEKWLYRTPLQ 629
           YGLPAVCDLFACMQLKVDKEKWLYRTPLQ
Sbjct: 601 YGLPAVCDLFACMQLKVDKEKWLYRTPLQ 629


>gi|14149617 nuclear receptor coactivator 4 isoform 3 [Homo sapiens]
          Length = 614

 Score = 1267 bits (3279), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 17  MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL 76
           MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL
Sbjct: 1   MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL 60

Query: 77  ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV 136
           ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV
Sbjct: 61  ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV 120

Query: 137 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE 196
           CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE
Sbjct: 121 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE 180

Query: 197 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS 256
           KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS
Sbjct: 181 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS 240

Query: 257 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD 316
           SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD
Sbjct: 241 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD 300

Query: 317 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI 376
           LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI
Sbjct: 301 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI 360

Query: 377 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE 436
           ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE
Sbjct: 361 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE 420

Query: 437 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS 496
           NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS
Sbjct: 421 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS 480

Query: 497 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV 556
           RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV
Sbjct: 481 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV 540

Query: 557 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK 616
           LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK
Sbjct: 541 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK 600

Query: 617 VDKEKWLYRTPLQ 629
           VDKEKWLYRTPLQ
Sbjct: 601 VDKEKWLYRTPLQ 613


>gi|223890287 nuclear receptor coactivator 4 isoform 3 [Homo
           sapiens]
          Length = 614

 Score = 1267 bits (3279), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 17  MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL 76
           MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL
Sbjct: 1   MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL 60

Query: 77  ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV 136
           ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV
Sbjct: 61  ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV 120

Query: 137 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE 196
           CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE
Sbjct: 121 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE 180

Query: 197 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS 256
           KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS
Sbjct: 181 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS 240

Query: 257 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD 316
           SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD
Sbjct: 241 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD 300

Query: 317 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI 376
           LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI
Sbjct: 301 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI 360

Query: 377 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE 436
           ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE
Sbjct: 361 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE 420

Query: 437 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS 496
           NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS
Sbjct: 421 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS 480

Query: 497 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV 556
           RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV
Sbjct: 481 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV 540

Query: 557 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK 616
           LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK
Sbjct: 541 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK 600

Query: 617 VDKEKWLYRTPLQ 629
           VDKEKWLYRTPLQ
Sbjct: 601 VDKEKWLYRTPLQ 613


>gi|223890284 nuclear receptor coactivator 4 isoform 3 [Homo
           sapiens]
          Length = 614

 Score = 1267 bits (3279), Expect = 0.0
 Identities = 613/613 (100%), Positives = 613/613 (100%)

Query: 17  MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL 76
           MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL
Sbjct: 1   MNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHL 60

Query: 77  ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV 136
           ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV
Sbjct: 61  ECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSV 120

Query: 137 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE 196
           CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE
Sbjct: 121 CLERLGSLTLKPEDSTVLLFEADTITLRQTITTFGSLKTIQIPEHLMAHASSANIGPFLE 180

Query: 197 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS 256
           KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS
Sbjct: 181 KRGCISMPEQKSASGIVAVPFSEWLLGSKPASGYQAPYIPSTDPQDWLTQKQTLENSQTS 240

Query: 257 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD 316
           SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD
Sbjct: 241 SRACNFFNNVGGNLKGLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEMD 300

Query: 317 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI 376
           LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI
Sbjct: 301 LSDWLVTPQESHKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEI 360

Query: 377 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE 436
           ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE
Sbjct: 361 ENLGNLKCLNDHLEAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDE 420

Query: 437 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS 496
           NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS
Sbjct: 421 NCEKEALYKWLLKKEGKDKNGMPVEPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPS 480

Query: 497 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV 556
           RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV
Sbjct: 481 RIADSFQVIKNSPLSEWLIRPPYKEGSPKEVPGTEDRAGKQKFKSPMNTSWCSFNTADWV 540

Query: 557 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK 616
           LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK
Sbjct: 541 LPGKKMGNLSQLSSGEDKWLLRKKAQEVLLNSPLQEEHNFPPDHYGLPAVCDLFACMQLK 600

Query: 617 VDKEKWLYRTPLQ 629
           VDKEKWLYRTPLQ
Sbjct: 601 VDKEKWLYRTPLQ 613


>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
          Length = 868

 Score = 38.1 bits (87), Expect = 0.026
 Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 33  LLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQVDL 92
           L      R+ ++L+I       +Q++   + V++++ +  +RH + L  RE  L  +V+ 
Sbjct: 329 LADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEK 388

Query: 93  IYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLT------- 145
           I Q+K ++L  Q ++L   L +       ++    +  A  + +  +R+ +         
Sbjct: 389 IRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVR 448

Query: 146 --LKPEDSTVLLFEADTITLRQTITTFG 171
             L+P++   ++F      L   I +FG
Sbjct: 449 SLLQPQEDDRVMFTPPDQALYLAIKSFG 476


>gi|56711324 HAUS augmin-like complex, subunit 3 [Homo sapiens]
          Length = 603

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 5   LTTFALAGAVRRMNTFQDQSGSSSNREPLLRCSDARRDLELAIGGVLRAEQQIKDNLREV 64
           LT  +++  +   NT   +  S+     +L   + +++L L  G +    +++K N+  V
Sbjct: 426 LTDPSVSQQINPRNTIDTKDYSTHRLYQVLEGENKKKELFLTHGNLEEVAEKLKQNISLV 485

Query: 65  KAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETL---QQQAQQLYSLLGQFNCLTHQ 121
           + Q+      H   L  R   +    D +YQ   + L   Q+  +Q + +  Q N L H 
Sbjct: 486 QDQLAVSAQEHSFFLSKRNKDVDMLCDTLYQGGNQLLLSDQELTEQFHKVESQLNKLNHL 545

Query: 122 LE------CTQNKDLANQVSVCLER 140
           L        T+ K LAN     +ER
Sbjct: 546 LTDILADVKTKRKTLANNKLHQMER 570


>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
          Length = 968

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 40  RRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEE 99
           + DLELA+      ++   DN RE+  +   C+ +  E LR RE  L+E  +   Q + +
Sbjct: 703 KEDLELAM------KRLTTDNRREICDKERECLMKKQELLRDREAALWEMEEHQLQERHQ 756

Query: 100 TLQQQAQQLYSLLGQFNCLTHQLECTQ----NKDLANQVSV 136
            ++QQ +  Y L        H+ E  Q    N+ +  Q+ V
Sbjct: 757 LVKQQLKDQYFLQRHELLRKHEKEREQMQRYNQRMIEQLKV 797


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 103 QQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLL----FEA 158
           +QAQ+    L       H+LE  +  + A + +V L R   +  K   S +L+    F+A
Sbjct: 785 EQAQKALKQLQGHVVDGHKLE-VRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQA 843

Query: 159 DTITLRQTITTFGSLKTIQIPEHLMAHASSANIG--PFLEKR 198
            +  +R+  +TFG LKT+++P+ +    +    G   FL K+
Sbjct: 844 HSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ 885


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 103 QQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLL----FEA 158
           +QAQ+    L       H+LE  +  + A + +V L R   +  K   S +L+    F+A
Sbjct: 785 EQAQKALKQLQGHVVDGHKLE-VRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQA 843

Query: 159 DTITLRQTITTFGSLKTIQIPEHLMAHASSANIG--PFLEKR 198
            +  +R+  +TFG LKT+++P+ +    +    G   FL K+
Sbjct: 844 HSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ 885


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 103 QQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLL----FEA 158
           +QAQ+    L       H+LE  +  + A + +V L R   +  K   S +L+    F+A
Sbjct: 785 EQAQKALKQLQGHVVDGHKLE-VRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQA 843

Query: 159 DTITLRQTITTFGSLKTIQIPEHLMAHASSANIG--PFLEKR 198
            +  +R+  +TFG LKT+++P+ +    +    G   FL K+
Sbjct: 844 HSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ 885


>gi|119120894 Dmx-like 2 [Homo sapiens]
          Length = 3036

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 267  GGNLK-GLENWLLKSEKSSYQKCNSHSTTSSFSIEMEKVGDQELPDQDEM-DLSDWLVTP 324
            GG L+  L NWL K   + ++ CN  S    +S +     + +L DQ+EM D  D  +  
Sbjct: 2066 GGKLRFQLYNWLEKEIAALHEICNHESVIKEYSSKTYSKVESDLLDQEEMVDKPD--IGS 2123

Query: 325  QESHKL-RKPENGSRETSEKFKLLFQ 349
             E H++ R+     RE +E+ K   Q
Sbjct: 2124 YERHQIERRRLQAKREHAERRKSWLQ 2149


>gi|34577114 cytomatrix protein p110 [Homo sapiens]
          Length = 957

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 33/173 (19%)

Query: 41  RDLE-----LAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQ 95
           RDLE     L   GVL  E    D   E+K          +E  +S   ++  ++D   Q
Sbjct: 395 RDLEDEIQMLKANGVLNTE----DREEEIK---------QIEVYKSHSKFMKTKID---Q 438

Query: 96  LKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLL 155
           LK+E L ++  +L +L  +   L++Q     N D    + V  E   SLT K + + +L 
Sbjct: 439 LKQE-LSKKESELLALQTKLETLSNQ-----NSDCKQHIEVLKE---SLTAKEQRAAILQ 489

Query: 156 FEADTITLR-QTITTFGSLKTIQIPEHLMAHASSANIGPFLEKRGCISMPEQK 207
            E D + LR +   +F + KT Q+ +  +        G   + +  + + E+K
Sbjct: 490 TEVDALRLRLEEKESFLNKKTKQLQD--LTEEKGTLAGEIRDMKDMLEVKERK 540


>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
          Length = 2663

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 328 HKLRKPENGSRETSEKFKLLFQSYNVNDWLVKTDSCTNCQGNQPKGVEIEN-LGNLKCLN 386
           HK +  E G    S++ KL   +Y   D   K+D     + +    +  EN L  LK   
Sbjct: 636 HKHKNKEKGQCSISQELKLKSFTYEYEDSKQKSDKAILLEND----LSTENKLKVLKHDR 691

Query: 387 DHLEAKKPLSTPSMVTEDWLVQNHQDPCKV------------EEVCRANEPCTSFAECVC 434
           DH + ++ LS   +  ++WL ++ +   ++            EE  R+N+     +    
Sbjct: 692 DHFKKEEKLSKMKLEEKEWLFKDEKSLKRIKDTNKDISRSFREEKDRSNKAEKERSLKEK 751

Query: 435 DENCEKEALYKWLLKKEGKDK 455
               EK  LYK   KK+ KD+
Sbjct: 752 SPKEEKLRLYKEERKKKSKDR 772


>gi|4504169 glutathione synthetase [Homo sapiens]
          Length = 474

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 48  GGVLRAEQQIKDNLREV--KAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQA 105
           G +L+ +QQ+++  R+   +A     + R  +   S EV  Y    L   L    L +QA
Sbjct: 6   GSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQA 65

Query: 106 QQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLLFEADTITLRQ 165
              Y++   FN L          D  +Q +  LE+  S T+K +D T  LF+     L++
Sbjct: 66  ---YAVQMDFNLLV---------DAVSQNAAFLEQTLSSTIKQDDFTARLFDIHKQVLKE 113

Query: 166 TI 167
            I
Sbjct: 114 GI 115


>gi|23503243 Ras association (RalGDS/AF-6) domain family
           (N-terminal) member 8 [Homo sapiens]
          Length = 392

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 20/163 (12%)

Query: 54  EQQIKDNLREVKAQIHSC---ISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYS 110
           E+Q+KD L+E++ +I  C   +  +L  +R+ E  L  +     +L+ E  + Q  +   
Sbjct: 237 EKQLKDQLQEIRQKITECENKLKDYLAQIRTMESGLEAE-----KLQREVQEAQVNE-EE 290

Query: 111 LLGQFNCLTHQLEC--TQNKDLANQVSVCLERLGSLTLKPEDS----TVLLFEADTITLR 164
           + G+   +  +++    Q+  L N +      LG  T + +D       L  E   + L+
Sbjct: 291 VKGKIGKVKGEIDIQGQQSLRLENGIKAVERSLGQATKRLQDKEQELEQLTKELRQVNLQ 350

Query: 165 QTITTFGSLKTIQIPEHLMAHASSANIGPFLEKRGCISMPEQK 207
           Q I   G+  T+   E +   AS A+I     +RG I + +++
Sbjct: 351 QFIQQTGTKVTVLPAEPIEIEASHADI-----ERGIIILSDKQ 388


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 46/171 (26%), Positives = 66/171 (38%), Gaps = 36/171 (21%)

Query: 390 EAKKPLSTPSMVTEDWLVQNHQDPCKVEEVCRANEPCTSFAECVCDENCEKEALYKWLLK 449
           EAK P    S V  +      + P K +   +        A+    E  +     K  +K
Sbjct: 673 EAKSPEKAKSPVKAE-----AKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVK 727

Query: 450 KEGK--DKNGMPV-EPKPEPEKHKDSLNMWLCPRKEVIEQTKAPKAMTPSR-----IADS 501
           +E K  +K   PV E    PEK K        P K      K+P+A TP++      AD 
Sbjct: 728 EEAKTPEKAKSPVKEEAKSPEKAKS-------PEKAKTLDVKSPEAKTPAKEEARSPADK 780

Query: 502 FQVIKNSPLSEWLIRPPYKEGSP---------KEVPGTEDRAGKQKFKSPM 543
           F     SP+ E  ++ P K  SP         KE+P       K++ KSP+
Sbjct: 781 FPEKAKSPVKE-EVKSPEKAKSPLKEDAKAPEKEIP------KKEEVKSPV 824


>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
           sapiens]
          Length = 1116

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 37  SDARRDLELAIGGVLRAEQQ-IKDNLREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQ 95
           S   R+ E+    V R+  + +K+ + ++K ++ S  ++  E L+ +   L  ++    Q
Sbjct: 415 STEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEE-LKKKAAGLQAEIG---Q 470

Query: 96  LKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQVSVCLERLGSLTLKPEDSTVLL 155
           +K+E L ++  +L +L  +   LT+Q       D    + V  E   SLT K + + +L 
Sbjct: 471 VKQE-LSRKDTELLALQTKLETLTNQFS-----DSKQHIEVLKE---SLTAKEQRAAILQ 521

Query: 156 FEADTITLR-QTITTFGSLKTIQIPEHLMAHASSANIGPFLEKRGCISMPEQK 207
            E D + LR +   T  + KT QI +  MA       G   + +  + + E+K
Sbjct: 522 TEVDALRLRLEEKETMLNKKTKQIQD--MAEEKGTQAGEIHDLKDMLDVKERK 572


>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
          Length = 744

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 47  IGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQ 106
           +GG+    QQ+++   E  AQI +      + L+ R+  L   ++ I   K++ LQ Q  
Sbjct: 183 VGGI---SQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLD 239

Query: 107 QLYSLLGQFNCLTHQLECTQNKDLANQVSVCL------ERLGSLTL-----KPEDSTVLL 155
            L    GQ +  +      Q   L +   V L      ERL +L       +P ++  L 
Sbjct: 240 TLRQ--GQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAAQAFPERPHENAQLE 297

Query: 156 FEADTITLRQTITTFGSLKTIQIPEH 181
              +   LR+++   G+L T     H
Sbjct: 298 LVLEVDGLRRSVLNLGALLTTSATAH 323


>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
          Length = 744

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 47  IGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQVDLIYQLKEETLQQQAQ 106
           +GG+    QQ+++   E  AQI +      + L+ R+  L   ++ I   K++ LQ Q  
Sbjct: 183 VGGI---SQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLD 239

Query: 107 QLYSLLGQFNCLTHQLECTQNKDLANQVSVCL------ERLGSLTL-----KPEDSTVLL 155
            L    GQ +  +      Q   L +   V L      ERL +L       +P ++  L 
Sbjct: 240 TLRQ--GQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAALAAQAFPERPHENAQLE 297

Query: 156 FEADTITLRQTITTFGSLKTIQIPEH 181
              +   LR+++   G+L T     H
Sbjct: 298 LVLEVDGLRRSVLNLGALLTTSATAH 323


>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
          Length = 557

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 31  EPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQV 90
           E L  C +A +D      G       + D  R ++   HS +  H+  +  + V L EQ+
Sbjct: 210 EHLAVCPEAEQDCPFKHYGCA-----VTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQI 264

Query: 91  DLIY---QLKEETLQQQAQQLYSLLGQF 115
             ++   + KE  +QQ A+ +  L  +F
Sbjct: 265 SDLHKSLEQKESKIQQLAETIKKLEKEF 292


>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
          Length = 557

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 31  EPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQV 90
           E L  C +A +D      G       + D  R ++   HS +  H+  +  + V L EQ+
Sbjct: 210 EHLAVCPEAEQDCPFKHYGCA-----VTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQI 264

Query: 91  DLIY---QLKEETLQQQAQQLYSLLGQF 115
             ++   + KE  +QQ A+ +  L  +F
Sbjct: 265 SDLHKSLEQKESKIQQLAETIKKLEKEF 292


>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
          Length = 557

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 31  EPLLRCSDARRDLELAIGGVLRAEQQIKDNLREVKAQIHSCISRHLECLRSREVWLYEQV 90
           E L  C +A +D      G       + D  R ++   HS +  H+  +  + V L EQ+
Sbjct: 210 EHLAVCPEAEQDCPFKHYGCA-----VTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQI 264

Query: 91  DLIY---QLKEETLQQQAQQLYSLLGQF 115
             ++   + KE  +QQ A+ +  L  +F
Sbjct: 265 SDLHKSLEQKESKIQQLAETIKKLEKEF 292


>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
          Length = 825

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 426 CTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPE-KHKDSLNMW 476
           C +F +    + C +E  Y  + K E +DK   PV+P P    K KD  + W
Sbjct: 649 CRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW 700


>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
          Length = 789

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 426 CTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPE-KHKDSLNMW 476
           C +F +    + C +E  Y  + K E +DK   PV+P P    K KD  + W
Sbjct: 649 CRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW 700


>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
          Length = 798

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 426 CTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPE-KHKDSLNMW 476
           C +F +    + C +E  Y  + K E +DK   PV+P P    K KD  + W
Sbjct: 649 CRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW 700


>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
          Length = 798

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 426 CTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPE-KHKDSLNMW 476
           C +F +    + C +E  Y  + K E +DK   PV+P P    K KD  + W
Sbjct: 649 CRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW 700


>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
          Length = 819

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 426 CTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPE-KHKDSLNMW 476
           C +F +    + C +E  Y  + K E +DK   PV+P P    K KD  + W
Sbjct: 649 CRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW 700


>gi|19743819 integrin beta 1 isoform 1D precursor [Homo sapiens]
          Length = 801

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 426 CTSFAECVCDENCEKEALYKWLLKKEGKDKNGMPVEPKPEPE-KHKDSLNMW 476
           C +F +    + C +E  Y  + K E +DK   PV+P P    K KD  + W
Sbjct: 649 CRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPVSHCKEKDVDDCW 700


>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
          Length = 1088

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 74  RHLECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSLLGQFNCLTHQLECTQNKDLANQ 133
           + +E  RS   ++  ++    Q+K+E L ++  +L +L  +   LT+Q       D    
Sbjct: 424 KQMEVYRSHSKFMKNKIG---QVKQE-LSRKDTELLALQTKLETLTNQFS-----DSKQH 474

Query: 134 VSVCLERLGSLTLKPEDSTVLLFEADTITLR-QTITTFGSLKTIQIPEHLMAHASSANIG 192
           + V  E   SLT K + + +L  E D + LR +   T  + KT QI +  MA       G
Sbjct: 475 IEVLKE---SLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD--MAEEKGTQAG 529

Query: 193 PFLEKRGCISMPEQK 207
              + +  + + E+K
Sbjct: 530 EIHDLKDMLDVKERK 544


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,807,513
Number of Sequences: 37866
Number of extensions: 1365873
Number of successful extensions: 3780
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3750
Number of HSP's gapped (non-prelim): 60
length of query: 650
length of database: 18,247,518
effective HSP length: 109
effective length of query: 541
effective length of database: 14,120,124
effective search space: 7638987084
effective search space used: 7638987084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.