Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: OXA1L Sequence: fasta or formatted (495aa) NCBI GI: 223718097
Description:

oxidase (cytochrome c) assembly 1-like

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         45           2
 C cysteine            2.0         10           3
 D aspartate           2.2         11           1
 E glutamate           4.2         21           1
 F phenylalanine       4.2         21           2
 G glycine             5.7         28           2
 H histidine           2.4         12           1
 I isoleucine          4.4         22           1
 K lysine              4.2         21           2
 L leucine            13.1         65           2
 M methionine          3.2         16           2
 N asparagine          2.2         11           1
 P proline             8.5         42           2
 Q glutamine           4.8         24           1
 R arginine            6.5         32           2
 S serine              7.3         36           4
 T threonine           5.3         26           2
 V valine              5.9         29           2
 W tryptophan          2.4         12           2
 Y tyrosine            2.2         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oxidase (cytochrome c) assembly 1-like 
COX18                 0.075   mitochondrial COX18 
TAF4                  0.006   TBP-associated factor 4 
AMOT                  0.006   angiomotin isoform 2 
AMOT                  0.006   angiomotin isoform 1 
WDR90                 0.006   WD repeat domain 90 
NCKIPSD               0.005   NCK interacting protein with SH3 domain isoform 1 [Ho...
NCKIPSD               0.005   NCK interacting protein with SH3 domain isoform 2 [H...
SRPK1                 0.005   SFRS protein kinase 1 
MAGEE1                0.005   melanoma antigen family E, 1 
EDC4                  0.005   autoantigen RCD8 
HAVCR1                0.005   hepatitis A virus cellular receptor 1 
HAVCR1                0.005   hepatitis A virus cellular receptor 1 
USP10                 0.005   ubiquitin specific protease 10 
ACAN                  0.004   aggrecan isoform 2 precursor 
ACAN                  0.004   aggrecan isoform 1 precursor 
CDH23                 0.004   cadherin-like 23 isoform 1 precursor 
FRAT1                 0.004   GSK-3 binding protein FRAT1 
BAT2D1                0.004   HBxAg transactivated protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press