Guide to the Human Genome
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Name: COX18 Sequence: fasta or formatted (333aa) NCBI GI: 28395049
Description:

mitochondrial COX18

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         35           2
 C cysteine            1.5          5           1
 D aspartate           2.1          7           1
 E glutamate           3.3         11           2
 F phenylalanine       3.6         12           1
 G glycine             5.1         17           2
 H histidine           1.8          6           1
 I isoleucine          6.3         21           1
 K lysine              3.3         11           1
 L leucine            13.5         45           3
 M methionine          2.1          7           1
 N asparagine          3.0         10           1
 P proline             6.6         22           1
 Q glutamine           3.6         12           1
 R arginine            6.3         21           2
 S serine              7.8         26           2
 T threonine           5.4         18           1
 V valine              7.8         26           1
 W tryptophan          3.6         12           2
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial COX18 
OXA1L                 0.115   oxidase (cytochrome c) assembly 1-like 
C6orf27               0.020   G7c protein 
LOC100287994          0.005   PREDICTED: hypothetical protein 
LOC100287994          0.005   PREDICTED: hypothetical protein XP_002342988 
IRGQ                  0.005   immunity-related GTPase family, Q 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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