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Search of human proteins with 223468620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223468620 makorin ring finger protein 1 isoform 1 [Homo
sapiens]
(482 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 1008 0.0
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 684 0.0
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 472 e-133
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 385 e-107
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 57 3e-08
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 54 2e-07
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 54 2e-07
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 49 1e-05
gi|193788659 cleavage and polyadenylation specific factor 4-like... 49 1e-05
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 45 1e-04
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 45 1e-04
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 45 2e-04
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 45 2e-04
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 43 6e-04
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 43 7e-04
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 43 7e-04
gi|15812180 butyrate response factor 1 [Homo sapiens] 41 0.002
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 41 0.003
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 41 0.003
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 39 0.008
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 39 0.008
gi|126116565 MYC binding protein 2 [Homo sapiens] 39 0.010
gi|35493801 ring finger protein 19 [Homo sapiens] 39 0.014
gi|35493782 ring finger protein 19 [Homo sapiens] 39 0.014
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens] 38 0.018
gi|4557595 forkhead box F2 [Homo sapiens] 38 0.018
gi|38788260 bromodomain PHD finger transcription factor isoform ... 38 0.018
gi|38788274 bromodomain PHD finger transcription factor isoform ... 38 0.018
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 38 0.018
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 38 0.018
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 1008 bits (2605), Expect = 0.0
Identities = 482/482 (100%), Positives = 482/482 (100%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
Sbjct: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
Query: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
Sbjct: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
Query: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
Sbjct: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
Query: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
Sbjct: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
Query: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK 360
ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK
Sbjct: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK 360
Query: 361 YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW 420
YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW
Sbjct: 361 YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW 420
Query: 421 ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL 480
ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL
Sbjct: 421 ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL 480
Query: 481 DL 482
DL
Sbjct: 481 DL 482
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 684 bits (1766), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
Sbjct: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
Query: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
Sbjct: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
Query: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
Sbjct: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
Query: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
Sbjct: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
Query: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
ILSNCNHTYCLKCIRKWRSAKQFESKIIK
Sbjct: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
Score = 33.1 bits (74), Expect = 0.58
Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 41/200 (20%)
Query: 209 TKKQLCPYAAVGECRYGENCVYLHGDS---------------C---DMCGLQVLHPMDAA 250
TK+ C Y G C+ G+NC Y H S C D C + P+
Sbjct: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
Query: 251 QRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYC 310
+ + A E + S A S + G +E+ +A F + + +
Sbjct: 116 EAT--------ATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWV 167
Query: 311 LKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKAC 370
++ + + + SC E + + +E+ EK++ ++ K+ + C
Sbjct: 168 NAI--EFVPGQPYCGRTAPSCTEAPLQGSVT-------KEESEKEQTAVETKKQL----C 214
Query: 371 RYFDEGRGSCPFGGNCFYKH 390
Y G C +G NC Y H
Sbjct: 215 PY--AAVGECRYGENCVYLH 232
Score = 29.6 bits (65), Expect = 6.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 370 CRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRA 413
C+YF RG C +G C Y+H+ P ++EE ++ T S A
Sbjct: 90 CKYFQ--RGYCIYGDRCRYEHSKP-LKQEEATATELTTKSSLAA 130
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 472 bits (1215), Expect = e-133
Identities = 257/504 (50%), Positives = 318/504 (63%), Gaps = 39/504 (7%)
Query: 2 AEAATPGTTATT------SGAGAAAATA---AAASPTPIPTVTAPSLGAGGGGGGSDGSG 52
AEAA G + SG AA +A AA P P P+ GG + SG
Sbjct: 20 AEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPVAPVPAHLRRGGLRPAPASG 79
Query: 53 GG-------------WTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCI 99
GG WTKQ+ CRY++HG CKEG+NCRYSHDLS + G
Sbjct: 80 GGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLSGRKMATEGGVSPPGASA 139
Query: 100 YGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNF-AT 158
G H +P QE A A AASS ++G E EAE N++ A
Sbjct: 140 GGGPSTAAHIEPPTQEVAEAPP-------AASSLSLPVIGSAAERGFFEAERDNADRGAA 192
Query: 159 VGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAA 218
GAG E W +AIEFVPGQPY GR S EAPLQ S E+E++Q AV + + C YA+
Sbjct: 193 GGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSS----ETERKQMAVGSGLRFCYYAS 248
Query: 219 VGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKD 278
G C GE+C+YLHGD CDMCGLQ LHPMDAAQR +H+++CIEAHEKDMELSFAVQR D
Sbjct: 249 RGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMD 308
Query: 279 MVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITS 338
VCGICMEVVYEKANP++RRFGILSNCNH++C++CIR+WRSA+QFE++I+KSCP+CR+TS
Sbjct: 309 KVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTS 368
Query: 339 NFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRRE 398
VIPSE+WVEE+EEKQKLI +YKEAMSNKACRYF EGRG+CPFG CFYKH YP+G +
Sbjct: 369 ELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKHEYPEGWGD 428
Query: 399 EPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDD 458
EP G+ S Y Q E + E + + + ++E+V L +L + D
Sbjct: 429 EPPGPGGGSFSAYWHQ----LVEPVRMGEGNMLYKSIKKELVVLRLASLLFKRFLS-LRD 483
Query: 459 ELTDSEDEWDLFHDELEDFYDLDL 482
EL SED+WDL H ELE++++L L
Sbjct: 484 ELPFSEDQWDLLHYELEEYFNLIL 507
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 385 bits (989), Expect = e-107
Identities = 188/408 (46%), Positives = 254/408 (62%), Gaps = 14/408 (3%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
TKQ+TCRYFMHGVC+EG C +SHDL++S S +CKY+Q+GYC YG RCRY+H++P
Sbjct: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
Query: 116 EA---TATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG----AGSEDWVN 168
T + + S + +V+ N+ E R + +G +
Sbjct: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
Query: 169 AIEFVPGQPYCGRTAPSCTEAP---LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYG 225
V C PS P L + + + ++ ++QLCPYAA GECR+G
Sbjct: 123 QPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFG 182
Query: 226 ENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICM 285
+ CVYLHG+ C++C LQVLHP D QR H K C+ E +ME +FA Q S+D VC ICM
Sbjct: 183 DACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICM 242
Query: 286 EVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSE 345
EV+ EKA+ SERRFGILSNCNHTYCL CIR+WR AKQFE+ IIKSCPECR+ S FVIPS
Sbjct: 243 EVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPSV 302
Query: 346 YWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKV 405
YWVE++ +K +LI +K+ M KAC+YF++G+G+CPFG C Y+HAYPDGR EP++ +
Sbjct: 303 YWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRK 362
Query: 406 GTSSRYRAQRRN--HFWELIEERENSNPFDNDEEEVVTFELGEMLLML 451
SS+ + N W+ IE RE+ + +N E+V ELG++ + L
Sbjct: 363 QLSSQGTVRFFNSVRLWDFIENRESRHVPNN--EDVDMTELGDLFMHL 408
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 57.4 bits (137), Expect = 3e-08
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
KQ+ C+YF+ G C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 275 KQI-CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNE 327
Score = 37.4 bits (85), Expect = 0.031
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
+CKYF G CI GD+C+++H L++ +
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRK 304
Score = 35.8 bits (81), Expect = 0.089
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
++G K + + E +E +K++C + G C GENC+Y+H +
Sbjct: 287 IKGDQCKFDHDAE---LEKRKEICKFYLQGYCTKGENCIYMHNE 327
Score = 30.4 bits (67), Expect = 3.7
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 61 CRYFMHGV-CKEGDNCRYSHD 80
C+++ G C +GDNC++SHD
Sbjct: 330 CKFYHSGAKCYQGDNCKFSHD 350
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 54.3 bits (129), Expect = 2e-07
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
KQ+ C+YF+ C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 194 KQI-CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNE 246
Score = 38.1 bits (87), Expect = 0.018
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
++G K + + E +E KK++C + G C GENC+YLH +
Sbjct: 206 IKGDQCKFDHDAE---IEKKKEMCKFYVQGYCTRGENCLYLHNE 246
Score = 33.9 bits (76), Expect = 0.34
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
+CKYF CI GD+C+++H +++++
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKK 223
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 42 GGGGGGSDGSG--------GGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF 93
G GGGGS S +V C+YF+ G C GD+C +SHD+ +CK++
Sbjct: 369 GDGGGGSYRSRDHDKPHQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 428
Query: 94 QRGYCIYGDRCRYEH 108
G+C + C Y H
Sbjct: 429 ITGFCARAENCPYMH 443
Score = 40.0 bits (92), Expect = 0.005
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 39 LGAGGGGGGSDG--SGGGWTKQVTCRYFMHGVCKEGDNCRYS-------HDLSDSPYSVV 89
+G G G GGS G + GG F +G Y H SD V+
Sbjct: 339 MGRGRGRGGSRGGMNKGGMNDDED---FYDEDMGDGGGGSYRSRDHDKPHQQSDKKGKVI 395
Query: 90 CKYFQRGYCIYGDRCRYEHSKPLKQE 115
CKYF G C +GD C + H L ++
Sbjct: 396 CKYFVEGRCTWGDHCNFSHDIELPKK 421
Score = 34.3 bits (77), Expect = 0.26
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 210 KKQLCPYAAVGECRYGENCVYLHGD 234
K++LC + G C ENC Y+HGD
Sbjct: 421 KRELCKFYITGFCARAENCPYMHGD 445
Score = 30.4 bits (67), Expect = 3.7
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 4 AATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGG 53
A P TA+ SG + ATA P + A LG GGGGG S G
Sbjct: 1100 AEAPSPTASPSGDASPPATA----PYDPRVLAAGGLGQGGGGGQSSVLSG 1145
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 48.5 bits (114), Expect = 1e-05
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 35 TAPSLGAGGGGGGSDGSG-----GGWTKQVTCRYFMHGVCKEGDNCRYSH-DLSD----- 83
T S G GGGG + SG GG + CR F+ VCK G CRY H D+S+
Sbjct: 11 TGSSGGGPGGGGSEEASGAGVGSGGASSDAICRDFLRNVCKRGKRCRYRHPDMSEVSNLG 70
Query: 84 --SPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
+ C FQ C CR+ H K++E
Sbjct: 71 VSKNEFIFCHDFQNKEC-SRPNCRFIHGS--KEDE 102
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPL 112
C +F G+C++G C + HD + VVCK++ RG C GD C++ H L
Sbjct: 41 CNFFTKGLCEKGKLCPFRHDRGEK--MVVCKHWLRGLCKKGDHCKFLHQYDL 90
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 27/79 (34%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSPY-------------------------SVV 89
K V C++++ G+CK+GD+C++ H DL+ P S
Sbjct: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQD 123
Query: 90 CKYFQRGYCIYGDRCRYEH 108
C ++ +G+C G C+Y H
Sbjct: 124 CPWYDQGFCKDGPLCKYRH 142
Score = 34.3 bits (77), Expect = 0.26
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRY 106
K C ++ G CK+G C+Y H ++C + G+C G +C++
Sbjct: 120 KSQDCPWYDQGFCKDGPLCKYRH-----VPRIMCLNYLVGFCPEGPKCQF 164
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTV----TAPSLGAGGGGGGSDGSGGG 54
++ +A P +++ S A AAAA AAAA+ + V + S GAGGG GG GSGGG
Sbjct: 441 VSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGG 498
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHS 109
K C YF+ G+C NC YSH + S + VC F +GYC G +C+ +H+
Sbjct: 725 KMPVCSYFLKGICSNS-NCPYSH-VYVSRKAEVCSDFLKGYCPLGAKCKKKHT 775
Score = 35.0 bits (79), Expect = 0.15
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQE 115
K C F+ G C G C+ H L +C F +RG C G +C+ H +
Sbjct: 752 KAEVCSDFLKGYCPLGAKCKKKHTL-------LCPDFARRGACPRGAQCQLLHRTQKRHS 804
Query: 116 EATATE-LTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVP 174
AT S A S +S+ GP + + + A + A + V
Sbjct: 805 RRAATSPAPGPSDATARSRVSASHGPRKPSASQRPTRQTPSSAALTAAA---------VA 855
Query: 175 GQPYC--GRTAPSCTEAPLQGS 194
P+C G +PS ++A S
Sbjct: 856 APPHCPGGSASPSSSKASSSSS 877
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 61 CRYFMH-GVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGD-RCRYEH 108
C Y+ G C G+ C Y HD P V VC F RG C D C + H
Sbjct: 673 CMYYNRFGRCNRGERCPYIHD----PEKVAVCTRFVRGTCKKTDGTCPFSH 719
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 44.7 bits (104), Expect = 2e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 27/81 (33%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHD-------------------------LSDSPYSVV-- 89
K V C++++ G+CK+GD C + H+ L P S +
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 90 CKYFQRGYCIYGDRCRYEHSK 110
C ++ RG+C +G CR+ H++
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 37.0 bits (84), Expect = 0.040
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK---------- 110
C ++ G CK G CR+ H V+C + G+C G C++ H +
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTRR-----VICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQ 178
Query: 111 -PLKQEEATATELTTKSSLAASSSLSSIVG 139
PL Q+ + T + S +S G
Sbjct: 179 PPLPQQTQPPAKQRTPQVIGVMQSQNSSAG 208
Score = 29.3 bits (64), Expect = 8.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSP 85
T++V C ++ G C EG +C++ H + P
Sbjct: 143 TRRVICVNYLVGFCPEGPSCKFMHPRFELP 172
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 44.7 bits (104), Expect = 2e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 27/81 (33%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHD-------------------------LSDSPYSVV-- 89
K V C++++ G+CK+GD C + H+ L P S +
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 90 CKYFQRGYCIYGDRCRYEHSK 110
C ++ RG+C +G CR+ H++
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 29.6 bits (65), Expect = 6.4
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
T++V C ++ G C EG +C++ H + P Q + + P Q
Sbjct: 143 TRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTT---EQPPLPQQTQPPAKQSNNPPLQR 199
Query: 116 EATATELTTKSSLAASSSLSSIVGPLVEMNT 146
++ +LT+++S ++G + N+
Sbjct: 200 SSSLIQLTSQNSSPNQQRTPQVIGVMQSQNS 230
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 43.1 bits (100), Expect = 6e-04
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 44/150 (29%)
Query: 4 AATPGTTATT---SGAGAAAATAAAASPTPIPTVTAPSLGAGG----------------- 43
A +PG+ + + G++ +AAA PT T+ PS G G
Sbjct: 68 APSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFRDRSFSEN 127
Query: 44 ---------------GGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSH------DLS 82
GGGGS + + ++ + G CK G+ C+++H L+
Sbjct: 128 GDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLT 187
Query: 83 DSP--YSVVCKYFQR-GYCIYGDRCRYEHS 109
P + +C+ F G+C YG RC + H+
Sbjct: 188 RHPKYKTELCRTFHTIGFCPYGPRCHFIHN 217
Score = 31.6 bits (70), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 210 KKQLC-PYAAVGECRYGENCVYLHG 233
K +LC P+ G C+YGE C + HG
Sbjct: 155 KTELCRPFEESGTCKYGEKCQFAHG 179
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 42.7 bits (99), Expect = 7e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 6 TPGTTA----TTSGAGAAAATAAAASPTPI----PTVTAPSLGAGGGGGGSDGSGG 53
+PG++A ++S A AAAA AAAAS +P AP + G GGGG G GG
Sbjct: 110 SPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGGGGGGGGG 165
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 42.7 bits (99), Expect = 7e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 6 TPGTTA----TTSGAGAAAATAAAASPTPI----PTVTAPSLGAGGGGGGSDGSGG 53
+PG++A ++S A AAAA AAAAS +P AP + G GGGG G GG
Sbjct: 92 SPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGGGGGGGGG 147
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 41.2 bits (95), Expect = 0.002
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 45 GGGSDGSGGGWTKQVTCRYFM-HGVCKEGDNCRYSHDLSD--------SPYSVVCKYFQR 95
GGG S T+ CR F +G CK GD C+++H + + + +C+ F
Sbjct: 106 GGGQVNSSRYKTE--LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHT 163
Query: 96 -GYCIYGDRCRYEHSKPLKQEEATATELT 123
G+C YG RC + H+ ++ A A +L+
Sbjct: 164 IGFCPYGPRCHFIHNAEERRALAGARDLS 192
Score = 30.0 bits (66), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 210 KKQLC-PYAAVGECRYGENCVYLHG 233
K +LC P+ G C+YG+ C + HG
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAHG 140
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 40.8 bits (94), Expect = 0.003
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 267 MELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKW--RSAKQFE 324
+ L A + D+ C +CM + YE + + C HT+CLKC+ + +AK
Sbjct: 453 LSLPLASFDASDLECALCMRLFYEP---------VTTPCGHTFCLKCLERCLDHNAKCPL 503
Query: 325 SKI-IKSCPECRITSNFVIPSE----YWVEEKEEKQKLILKYKEAMSN 367
K + C R S VI E + EE +E++KL + E +SN
Sbjct: 504 CKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSN 551
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 40.8 bits (94), Expect = 0.003
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 267 MELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKW--RSAKQFE 324
+ L A + D+ C +CM + YE + + C HT+CLKC+ + +AK
Sbjct: 412 LSLPLASFDASDLECALCMRLFYEP---------VTTPCGHTFCLKCLERCLDHNAKCPL 462
Query: 325 SKI-IKSCPECRITSNFVIPSE----YWVEEKEEKQKLILKYKEAMSN 367
K + C R S VI E + EE +E++KL + E +SN
Sbjct: 463 CKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSN 510
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 39.3 bits (90), Expect = 0.008
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 267 MELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESK 326
M+ S V K++ C IC+E++ E + +C H++C CI +AK ES
Sbjct: 1 MDFSVKVDIEKEVTCPICLELLTEPLS---------LDCGHSFCQACI----TAKIKESV 47
Query: 327 II----KSCPEC--RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRY 372
II SCP C R + P+ + E +++ + +E C +
Sbjct: 48 IISRGESSCPVCQTRFQPGNLRPNRHLANIVERVKEVKMSPQEGQKRDVCEH 99
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 39.3 bits (90), Expect = 0.008
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 51 SGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLS 82
S G K V C +F G C +GD C++SHDL+
Sbjct: 95 SKGADPKSVVCAFFKQGQCTKGDKCKFSHDLT 126
Score = 38.1 bits (87), Expect = 0.018
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 85 PYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
P SVVC +F++G C GD+C++ H L+++
Sbjct: 100 PKSVVCAFFKQGQCTKGDKCKFSHDLTLERK 130
Score = 31.2 bits (69), Expect = 2.2
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 349 EEKEEKQKLILK-YKEAMSNKACRYFDEGRGSCPFGGN-CFYKHAYPDG 395
E+K+ K +++ K + EA+ N +F CP GG+ C Y+HA P G
Sbjct: 170 EKKKPKTQIVCKHFLEAIENNKYGWF----WVCPGGGDICMYRHALPPG 214
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 38.9 bits (89), Expect = 0.010
Identities = 31/148 (20%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 245 HPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSN 304
HP + +H C+ +K + ++++ D +C IC A I +
Sbjct: 4357 HPCGGVKNEEHCLPCLHGCDKS---ATSLKQDADDMCMICFTEALSAAP------AIQLD 4407
Query: 305 CNHTYCLKCIRKWRSAKQFESKI---IKSCPECRITSNFVI------PSEYWVEEKEEKQ 355
C+H + L+C R+ + +I SCP C+ N ++ P + E+ K
Sbjct: 4408 CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYEDVRRKA 4467
Query: 356 KLILKYK-----EAMSNKACRYFDEGRG 378
+ L+Y+ EA++ R++++ G
Sbjct: 4468 LMRLEYEGLHKSEAITTPGVRFYNDPAG 4495
Score = 30.0 bits (66), Expect = 4.9
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 410 RYRAQRRNHFWE-LIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDD--------EL 460
R A R WE I +EN+N NDE+ E+L M+LA G + +L
Sbjct: 3940 RMEATRVREEWEHAISSKENANSQPNDEDASSDAYCFELLSMVLALSGSNVGRQYLAQQL 3999
Query: 461 TDSEDEWDLFH 471
T +D + L H
Sbjct: 4000 TLLQDLFSLLH 4010
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 38.5 bits (88), Expect = 0.014
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 295 SERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSN-----FVIPSEYWVE 349
S+ RF + C+H C+ C+R++ + ES++ SCPEC N ++ + +E
Sbjct: 140 SKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLME 199
Query: 350 EKEE 353
+ EE
Sbjct: 200 KYEE 203
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 38.5 bits (88), Expect = 0.014
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 295 SERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSN-----FVIPSEYWVE 349
S+ RF + C+H C+ C+R++ + ES++ SCPEC N ++ + +E
Sbjct: 140 SKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLME 199
Query: 350 EKEE 353
+ EE
Sbjct: 200 KYEE 203
>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
Length = 701
Score = 38.1 bits (87), Expect = 0.018
Identities = 57/272 (20%), Positives = 93/272 (34%), Gaps = 86/272 (31%)
Query: 18 AAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCK---EGDN 74
A A AAA+P + +P G G G + CR+ ++G CK G N
Sbjct: 52 AVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKN 111
Query: 75 CRYSHDLS-------------------------------------------DSPYSV--- 88
CR SH L+ D P+
Sbjct: 112 CRNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAF 171
Query: 89 --------VCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGP 140
+C+YF +G C +G C+ H + + + L L SS L S + P
Sbjct: 172 QKQCIKLHICQYFLQGECKFGTSCKRSH------DFSNSENLEKLEKLGMSSDLVSRL-P 224
Query: 141 LVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEES 200
+ N + ++++S + V FVP Q R S + +P ++++EE
Sbjct: 225 TIYRNAHDIKNKSSAPSRVPP---------LFVP-QGTSERKDSSGSVSP--NTLSQEEG 272
Query: 201 EKEQTAVETKKQLCPYAAVGECRYGENCVYLH 232
+ Q+C Y C + + C +H
Sbjct: 273 D----------QICLYHIRKSCSFQDKCHRVH 294
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 38.1 bits (87), Expect = 0.018
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
A AA P TT+++S + +A+ ++++S + +APS GGG G+G G K+ +
Sbjct: 37 AAAAAPETTSSSSSSSSASCASSSSSSN---SASAPSAACKSAGGGGAGAGSGGAKKAS 92
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 38.1 bits (87), Expect = 0.018
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVT-APSLGAGGGGGGSDGSGGG 54
A+A T +S G +++ P P P T AP G GGGGG G GGG
Sbjct: 54 AQAEVAPKTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGG 107
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 38.1 bits (87), Expect = 0.018
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVT-APSLGAGGGGGGSDGSGGG 54
A+A T +S G +++ P P P T AP G GGGGG G GGG
Sbjct: 54 AQAEVAPKTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGG 107
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 38.1 bits (87), Expect = 0.018
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 53 GGWTKQVTCRYFMHGVCKEGDN-CRYSH-------DLSDSPYSVVCKYFQRGYCIYGDRC 104
G + V CR + G C G+N CR++H D +D+ + VC + +G C ++C
Sbjct: 109 GAPLQPVVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVT-VCMDYIKGRC-SREKC 166
Query: 105 RYEHSKPLKQEEATATELTTKSSLAASSSLSS 136
+Y H Q + A + + AA ++ ++
Sbjct: 167 KYFHPPAHLQAKIKAAQYQVNQAAAAQAAATA 198
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 55 WTKQVTCRYFMHGVCKEGD-NCRYSHDLS----DSPYSVVCKYFQRGYCIYGDRCRYEHS 109
W CR F G C D C+++H ++ + C +G C + C+Y H
Sbjct: 13 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC-SRENCKYLHP 71
Query: 110 KPLKQEEATATELTTKSSLAASSSLSSI 137
P T E+ +++L +++ +
Sbjct: 72 PP---HLKTQLEINGRNNLIQQKNMAML 96
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 38.1 bits (87), Expect = 0.018
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 53 GGWTKQVTCRYFMHGVCKEGDN-CRYSH-------DLSDSPYSVVCKYFQRGYCIYGDRC 104
G + V CR + G C G+N CR++H D +D+ + VC + +G C ++C
Sbjct: 109 GAPLQPVVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVT-VCMDYIKGRC-SREKC 166
Query: 105 RYEHSKPLKQEEATATELTTKSSLAASSSLSS 136
+Y H Q + A + + AA ++ ++
Sbjct: 167 KYFHPPAHLQAKIKAAQYQVNQAAAAQAAATA 198
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 55 WTKQVTCRYFMHGVCKEGD-NCRYSHDLS----DSPYSVVCKYFQRGYCIYGDRCRYEHS 109
W CR F G C D C+++H ++ + C +G C + C+Y H
Sbjct: 13 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC-SRENCKYLHP 71
Query: 110 KPLKQEEATATELTTKSSLAASSSLSSI 137
P T E+ +++L +++ +
Sbjct: 72 PP---HLKTQLEINGRNNLIQQKNMAML 96
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,808,943
Number of Sequences: 37866
Number of extensions: 1066775
Number of successful extensions: 13624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 10163
Number of HSP's gapped (non-prelim): 2530
length of query: 482
length of database: 18,247,518
effective HSP length: 106
effective length of query: 376
effective length of database: 14,233,722
effective search space: 5351879472
effective search space used: 5351879472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.