Guide to the Human Genome
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Name: DCLRE1A Sequence: fasta or formatted (1040aa) NCBI GI: 223278374
Description:

DNA cross-link repair 1A

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         49           2
 C cysteine            2.7         28           1
 D aspartate           4.8         50           3
 E glutamate           6.5         68           2
 F phenylalanine       4.0         42           2
 G glycine             5.6         58           2
 H histidine           2.9         30           1
 I isoleucine          4.1         43           2
 K lysine              8.4         87           2
 L leucine             9.0         94           2
 M methionine          1.4         15           2
 N asparagine          5.1         53           2
 P proline             6.0         62           2
 Q glutamine           5.3         55           2
 R arginine            3.7         38           1
 S serine             10.7        111           2
 T threonine           5.8         60           2
 V valine              5.3         55           2
 W tryptophan          0.7          7           1
 Y tyrosine            3.4         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA cross-link repair 1A 
DCLRE1B               0.065   DNA cross-link repair 1B (PSO2 homolog, S. cerevisia...
DCLRE1C               0.034   artemis protein isoform a 
DCLRE1C               0.018   artemis protein isoform c 
DCLRE1C               0.018   artemis protein isoform d 
DCLRE1C               0.017   artemis protein isoform b 
C15orf42              0.006   leucine-rich repeat kinase 1 
NUSAP1                0.006   nucleolar and spindle associated protein 1 isoform 2...
BAZ2B                 0.006   bromodomain adjacent to zinc finger domain, 2B [Homo...
ZRANB2                0.006   zinc finger protein 265 isoform 1 
ZRANB2                0.006   zinc finger protein 265 isoform 2 
AHCTF1                0.005   transcription factor ELYS 
MYO9A                 0.005   myosin IXA 
PPIG                  0.005   peptidylprolyl isomerase G 
ZEB1                  0.005   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.005   zinc finger E-box binding homeobox 1 isoform b [Hom...
NKTR                  0.005   natural killer-tumor recognition sequence 
PINX1                 0.004   PIN2-interacting protein 1 
LOC100293925          0.004   PREDICTED: hypothetical protein 
LOC100290461          0.004   PREDICTED: hypothetical protein XP_002347147 
LOC100289151          0.004   PREDICTED: hypothetical protein XP_002343013 
HUWE1                 0.004   HECT, UBA and WWE domain containing 1 
LYAR                  0.004   Ly1 antibody reactive homolog 
LYAR                  0.004   Ly1 antibody reactive homolog 
DSPP                  0.004   dentin sialophosphoprotein preproprotein 
ANK2                  0.004   ankyrin 2 isoform 1 
NUSAP1                0.004   nucleolar and spindle associated protein 1 isoform ...
NUSAP1                0.004   nucleolar and spindle associated protein 1 isoform ...
AGAP9                 0.004   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.004   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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