Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DCLRE1C Sequence: fasta or formatted (692aa) NCBI GI: 76496497
Description:

artemis protein isoform a

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [577aa] artemis protein isoform b
alt prot [572aa] artemis protein isoform d
alt prot [572aa] artemis protein isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         27           2
 C cysteine            2.6         18           2
 D aspartate           5.3         37           2
 E glutamate           8.7         60           3
 F phenylalanine       3.8         26           2
 G glycine             4.6         32           2
 H histidine           3.0         21           2
 I isoleucine          4.9         34           2
 K lysine              5.8         40           2
 L leucine             9.0         62           3
 M methionine          1.7         12           1
 N asparagine          3.2         22           2
 P proline             6.1         42           1
 Q glutamine           3.8         26           1
 R arginine            5.6         39           2
 S serine             11.3         78           3
 T threonine           6.6         46           2
 V valine              5.6         39           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.5         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   artemis protein isoform a 
DCLRE1C               0.825   artemis protein isoform c 
DCLRE1C               0.825   artemis protein isoform d 
DCLRE1C               0.824   artemis protein isoform b 
LOC100293925          0.126   PREDICTED: hypothetical protein 
LOC100290461          0.126   PREDICTED: hypothetical protein XP_002347147 
LOC100289151          0.126   PREDICTED: hypothetical protein XP_002343013 
DCLRE1B               0.061   DNA cross-link repair 1B (PSO2 homolog, S. cerevisia...
DCLRE1A               0.051   DNA cross-link repair 1A 
AKAP12                0.013   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.013   A kinase (PRKA) anchor protein 12 isoform 2 
SENP7                 0.010   sentrin/SUMO-specific protease 7 isoform 1 
AP3B1                 0.009   adaptor-related protein complex 3, beta 1 subunit [H...
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
USP34                 0.008   ubiquitin specific protease 34 
LOC100294249          0.007   PREDICTED: hypothetical protein XP_002344067 
NFE2L1                0.007   nuclear factor erythroid 2-like 1 
AP3B2                 0.007   adaptor-related protein complex 3, beta 2 subunit [H...
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC100294501          0.007   PREDICTED: hypothetical protein 
LOC100294238          0.007   PREDICTED: hypothetical protein 
LOC100294204          0.007   PREDICTED: hypothetical protein 
LOC100294136          0.007   PREDICTED: hypothetical protein 
LOC100294091          0.007   PREDICTED: hypothetical protein 
LOC730401             0.007   PREDICTED: hypothetical protein 
C19orf44              0.007   hypothetical protein LOC84167 
FAM135B               0.006   hypothetical protein LOC51059 
CPSF3L                0.006   cleavage and polyadenylation specific factor 3-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press