Guide to the Human Genome
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Name: LOC100290461 Sequence: fasta or formatted (133aa) NCBI GI: 239749742
Description:

PREDICTED: hypothetical protein XP_002347147

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          4           2
 C cysteine            5.3          7           1
 D aspartate           4.5          6           1
 E glutamate           7.5         10           2
 F phenylalanine       3.0          4           1
 G glycine             3.8          5           1
 H histidine           5.3          7           2
 I isoleucine          4.5          6           1
 K lysine              3.8          5           1
 L leucine            12.0         16           2
 M methionine          3.0          4           1
 N asparagine          3.8          5           1
 P proline             3.8          5           1
 Q glutamine           6.0          8           1
 R arginine            2.3          3           1
 S serine              6.0          8           1
 T threonine           6.8          9           2
 V valine              6.8          9           2
 W tryptophan          4.5          6           2
 Y tyrosine            4.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347147 
LOC100293925          1.000   PREDICTED: hypothetical protein 
LOC100289151          1.000   PREDICTED: hypothetical protein XP_002343013 
DCLRE1C               0.653   artemis protein isoform a 
DCLRE1C               0.653   artemis protein isoform b 
DCLRE1C               0.653   artemis protein isoform c 
DCLRE1C               0.653   artemis protein isoform d 
DCLRE1A               0.034   DNA cross-link repair 1A 
TNS3                  0.015   tensin 3 
CKAP5                 0.015   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.015   colonic and hepatic tumor over-expressed protein iso...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.007   tensin like C1 domain containing phosphatase isoform...
DCLRE1B               0.007   DNA cross-link repair 1B (PSO2 homolog, S. cerevisia...
ACER3                 0.007   phytoceramidase, alkaline 
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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