Guide to the Human Genome
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Name: COG5 Sequence: fasta or formatted (839aa) NCBI GI: 240849537
Description:

component of oligomeric golgi complex 5 isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [860aa] component of oligomeric golgi complex 5 isoform 1
alt prot [823aa] component of oligomeric golgi complex 5 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         80           4
 C cysteine            1.0          8           1
 D aspartate           5.5         46           2
 E glutamate           5.7         48           2
 F phenylalanine       3.8         32           1
 G glycine             6.4         54           4
 H histidine           2.0         17           1
 I isoleucine          5.8         49           3
 K lysine              4.5         38           2
 L leucine            11.2         94           3
 M methionine          2.3         19           2
 N asparagine          3.3         28           1
 P proline             4.3         36           2
 Q glutamine           6.9         58           2
 R arginine            5.7         48           3
 S serine              8.0         67           3
 T threonine           4.3         36           2
 V valine              6.3         53           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.6         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   component of oligomeric golgi complex 5 isoform 2 [... 
COG5                  0.993   component of oligomeric golgi complex 5 isoform 1 [...
COG5                  0.950   component of oligomeric golgi complex 5 isoform 3 [...
CEP135                0.009   centrosome protein 4 
COG2                  0.007   component of oligomeric golgi complex 2 isoform 2 [...
COG2                  0.007   component of oligomeric golgi complex 2 isoform 1 [Ho...
JAKMIP1               0.006   janus kinase and microtubule interacting protein 1 i...
JAKMIP1               0.006   janus kinase and microtubule interacting protein 1 ...
MYH8                  0.006   myosin, heavy chain 8, skeletal muscle, perinatal [...
CEP250                0.005   centrosomal protein 2 
LOC100293375          0.005   PREDICTED: hypothetical protein 
MYH1                  0.005   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CCDC39                0.005   coiled-coil domain containing 39 
GOLGB1                0.005   golgi autoantigen, golgin subfamily b, macrogolgin ...
KRT80                 0.004   keratin 80 isoform a 
KRT80                 0.004   keratin 80 isoform b 
LOC100289112          0.004   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.004   tripartite motif-containing 77 
GOLGA3                0.004   Golgi autoantigen, golgin subfamily a, 3 
SYCE1                 0.004   synaptonemal complex central element protein 1 isof...
SYCE1                 0.004   synaptonemal complex central element protein 1 isof...
SYCE1                 0.004   synaptonemal complex central element protein 1 isofo...
ANKRD62               0.004   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.004   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.004   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
TACC1                 0.004   transforming, acidic coiled-coil containing protein...
TACC1                 0.004   transforming, acidic coiled-coil containing protein...
TACC1                 0.004   transforming, acidic coiled-coil containing protein...
EEA1                  0.004   early endosome antigen 1, 162kD 
MYH2                  0.004   myosin, heavy chain 2, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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