Guide to the Human Genome
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Name: C12orf70 Sequence: fasta or formatted (343aa) NCBI GI: 222446616
Description:

hypothetical protein LOC341346

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         14           1
 C cysteine            1.7          6           1
 D aspartate           8.2         28           2
 E glutamate           9.9         34           2
 F phenylalanine       3.8         13           2
 G glycine             3.8         13           1
 H histidine           1.2          4           1
 I isoleucine          4.7         16           2
 K lysine              8.7         30           3
 L leucine            14.9         51           2
 M methionine          4.1         14           1
 N asparagine          5.2         18           2
 P proline             2.6          9           2
 Q glutamine           5.2         18           2
 R arginine            3.5         12           1
 S serine              5.0         17           2
 T threonine           6.7         23           2
 V valine              4.4         15           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC341346 
FILIP1L               0.032   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.032   filamin A interacting protein 1-like isoform 1 [Hom...
C10orf118             0.030   CTCL tumor antigen L14-2 
FILIP1L               0.030   filamin A interacting protein 1-like isoform 2 [Hom...
TMCO5A                0.027   transmembrane and coiled-coil domains 5A 
GOLGA4                0.023   golgi autoantigen, golgin subfamily a, 4 
ANKRD18B              0.023   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.023   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.023   PREDICTED: ankyrin repeat domain 18B 
MYH10                 0.023   myosin, heavy polypeptide 10, non-muscle 
ERC2                  0.021   cytomatrix protein p110 
GOLGB1                0.021   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH13                 0.021   myosin, heavy polypeptide 13, skeletal muscle [Homo...
HMMR                  0.020   hyaluronan-mediated motility receptor isoform a [Ho...
NUF2                  0.020   NUF2, NDC80 kinetochore complex component 
NUF2                  0.020   NUF2, NDC80 kinetochore complex component 
HMMR                  0.018   hyaluronan-mediated motility receptor isoform b [Ho...
CENPF                 0.018   centromere protein F 
KIF20B                0.018   M-phase phosphoprotein 1 
GCC2                  0.018   GRIP and coiled-coil domain-containing 2 
CENPE                 0.018   centromere protein E 
CDC42BPB              0.018   CDC42-binding protein kinase beta 
HMMR                  0.017   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.017   hyaluronan-mediated motility receptor isoform c [Ho...
CMYA5                 0.017   cardiomyopathy associated 5 
GCOM1                 0.015   GRINL1A combined protein isoform 2 
GCOM1                 0.015   GRINL1A combined protein isoform 1 
GCOM1                 0.015   GRINL1A upstream protein isoform 7 
MYH15                 0.015   myosin, heavy polypeptide 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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