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Search of human proteins with 222352111
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222352111 MKI67 interacting nucleolar phosphoprotein [Homo
sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222352111 MKI67 interacting nucleolar phosphoprotein [Homo sa... 587 e-168
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 55 7e-08
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 55 7e-08
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 52 5e-07
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 52 8e-07
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 51 1e-06
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 51 1e-06
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 50 2e-06
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 50 2e-06
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 50 3e-06
gi|25121978 deleted in azoospermia-like [Homo sapiens] 49 4e-06
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 48 1e-05
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 48 1e-05
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 48 1e-05
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 48 1e-05
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 48 1e-05
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 48 1e-05
gi|189181654 deleted in azoospermia [Homo sapiens] 47 2e-05
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 47 2e-05
gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens] 47 2e-05
gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens] 47 2e-05
gi|54292110 deleted in azoospermia 3 [Homo sapiens] 47 2e-05
gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens] 47 2e-05
gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens] 47 2e-05
gi|123173757 RAVER1 [Homo sapiens] 47 2e-05
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 47 3e-05
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 47 3e-05
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 47 3e-05
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 47 3e-05
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 47 3e-05
>gi|222352111 MKI67 interacting nucleolar phosphoprotein [Homo
sapiens]
Length = 293
Score = 587 bits (1513), Expect = e-168
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ 60
MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ
Sbjct: 1 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ 60
Query: 61 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF 120
IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF
Sbjct: 61 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF 120
Query: 121 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG 180
MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG
Sbjct: 121 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG 180
Query: 181 IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT 240
IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT
Sbjct: 181 IDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPT 240
Query: 241 FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ 293
FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ
Sbjct: 241 FLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ 293
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 55.1 bits (131), Expect = 7e-08
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 20 VEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRS 79
VE E ++R++ ++ + VYV LP ++ + I F + G V +
Sbjct: 100 VELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHY 159
Query: 80 KRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFK 139
K TG+ KG+AFVEFE+++ A E +NN PPE+ P K
Sbjct: 160 KSTGDPKGFAFVEFETKEQAAKAIEFLNN-------------PPEEA----------PRK 196
Query: 140 QPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKK----LAKKGIDYDFPSLILQKTES 195
+P +N+ + +EE+ KKK++ R K + K + D + + K +
Sbjct: 197 PGIFPKTV---KNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKR 253
Query: 196 ISKTN-----RQTSTKGQVLRKKKKK 216
T+ T + Q +KKKK+
Sbjct: 254 SRPTSEGSDIESTEPQKQCSKKKKKR 279
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 55.1 bits (131), Expect = 7e-08
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 20 VEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRS 79
VE E ++R++ ++ + VYV LP ++ + I F + G V +
Sbjct: 100 VELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHY 159
Query: 80 KRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFK 139
K TG+ KG+AFVEFE+++ A E +NN PPE+ P K
Sbjct: 160 KSTGDPKGFAFVEFETKEQAAKAIEFLNN-------------PPEEA----------PRK 196
Query: 140 QPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKK----LAKKGIDYDFPSLILQKTES 195
+P +N+ + +EE+ KKK++ R K + K + D + + K +
Sbjct: 197 PGIFPKTV---KNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKR 253
Query: 196 ISKTN-----RQTSTKGQVLRKKKKK 216
T+ T + Q +KKKK+
Sbjct: 254 SRPTSEGSDIESTEPQKQCSKKKKKR 279
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 52.4 bits (124), Expect = 5e-07
Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 27/212 (12%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+++ LP L E I FSQ+G + L R K+TG SKG+ F+ +E + + +
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 107 NNYLFGERLLECHFMPPEKVHKE---------LFKDWNIPFKQPSYPSVKRYNRNRTLTQ 157
N R + + + K+ ++ + PS PS+ + + T+
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPS-PSLSESSEDEKPTK 156
Query: 158 KLRMEERFKKKERLLRKKLAKKGIDYDFPSLILQKTESI-----------SKTNRQTSTK 206
K + +++ KKK++ ++K A + + + PS + +++ S N + + K
Sbjct: 157 KHKKDKKEKKKKKKEKEK-ADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQK 215
Query: 207 -----GQVLRKKKKKVSGTLDTPEKTVDSQGP 233
GQ L K + SG + E+ + + P
Sbjct: 216 SEPREGQKLPKSRTAYSGGAEDLERELKKEKP 247
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 51.6 bits (122), Expect = 8e-07
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
V+V ++P E Q+ FS+ G+V FRL + TG KGY F E++ ++ A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 107 NNYLFGERLLECHFMPPEKVHKEL 130
N F R L EK +EL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 51.2 bits (121), Expect = 1e-06
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
V+V +LP ++E+ I +F G++ R+ R K TG KG+ +V FE+ D + +
Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348
Query: 107 NNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQK 158
N+ L G +L V+KE FK N P +V + + T K
Sbjct: 349 NSELMGRKL-----RVMRSVNKEKFKQQN---SNPRLKNVSKPKQGLNFTSK 392
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 50.8 bits (120), Expect = 1e-06
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
V+V ++P E Q+ FS+ G V FRL + TG KGY F E++ ++ A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 107 NNYLFGERLLECHFMPPEKVHKEL 130
N F R L EK +EL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG VT ++ R T KG+ FV + D A + ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y GER+L+ F K HK
Sbjct: 346 NGYRLGERVLQVSF-KTSKQHK 366
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + + A T+N
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T++QK ME+ F +
Sbjct: 103 LKLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMSQK-EMEQLFSQY 148
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 149 GRIITSRI 156
Score = 37.0 bits (84), Expect = 0.021
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 4 FSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFS 63
+S P ++N ++ Q + +V R + +YV LP + + ++
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Query: 64 YFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMN 107
FSQ+G + R+ + TG S+G F+ F+ A+ + +N
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG VT ++ R T KG+ FV + D A + ++
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y GER+L+ F K HK
Sbjct: 339 NGYRLGERVLQVSF-KTSKQHK 359
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + + A T+N
Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T++QK ME+ F +
Sbjct: 103 LKLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMSQK-EMEQLFSQY 148
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 149 GRIITSRI 156
Score = 37.0 bits (84), Expect = 0.021
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 4 FSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFS 63
+S P ++N ++ Q + +V R + +YV LP + + ++
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Query: 64 YFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMN 107
FSQ+G + R+ + TG S+G F+ F+ A+ + +N
Sbjct: 144 LFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 187
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 49.7 bits (117), Expect = 3e-06
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG VT ++ R T KG+ FV + D A + ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y G+R+L+ F K HK
Sbjct: 338 NGYRLGDRVLQVSF-KTNKTHK 358
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + ++ S F G + +L R K TG S GY FV + A+ T+N
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T+TQK +E+ F +
Sbjct: 103 LRLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMTQK-ELEQLFSQY 148
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 149 GRIITSRI 156
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV LP + + ++ FSQ+G + R+ + TG S+G F+ F+ A+ + +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 107 N 107
N
Sbjct: 187 N 187
>gi|25121978 deleted in azoospermia-like [Homo sapiens]
Length = 295
Score = 49.3 bits (116), Expect = 4e-06
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S+F+++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII-TDRTGVSKGYGFVSFFNDVDVQ 94
Query: 100 KIVAETMN 107
KIV +N
Sbjct: 95 KIVESQIN 102
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG V ++ R T KG+ FV + D A + ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y G+R+L+ F K HK
Sbjct: 359 NGYRLGDRVLQVSF-KTNKAHK 379
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + A+ T+N
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T+TQK +E+ F +
Sbjct: 110 LRLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMTQK-ELEQLFSQY 155
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 156 GRIITSRI 163
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV LP + + ++ FSQ+G + R+ + TG S+G F+ F+ A+ + +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 107 N 107
N
Sbjct: 194 N 194
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG V ++ R T KG+ FV + D A + ++
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y G+R+L+ F K HK
Sbjct: 348 NGYRLGDRVLQVSF-KTNKAHK 368
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + A+ T+N
Sbjct: 53 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 112
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T+TQK +E+ F +
Sbjct: 113 LRLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMTQK-ELEQLFSQY 158
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 159 GRIITSRI 166
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV LP + + ++ FSQ+G + R+ + TG S+G F+ F+ A+ + +
Sbjct: 137 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 196
Query: 107 N 107
N
Sbjct: 197 N 197
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG V ++ R T KG+ FV + D A + ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y G+R+L+ F K HK
Sbjct: 345 NGYRLGDRVLQVSF-KTNKAHK 365
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + A+ T+N
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T+TQK +E+ F +
Sbjct: 110 LRLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMTQK-ELEQLFSQY 155
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 156 GRIITSRI 163
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV LP + + ++ FSQ+G + R+ + TG S+G F+ F+ A+ + +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 107 N 107
N
Sbjct: 194 N 194
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG V ++ R T KG+ FV + D A + ++
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y G+R+L+ F K HK
Sbjct: 362 NGYRLGDRVLQVSF-KTNKAHK 382
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + A+ T+N
Sbjct: 67 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 126
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T+TQK +E+ F +
Sbjct: 127 LRLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMTQK-ELEQLFSQY 172
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 173 GRIITSRI 180
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV LP + + ++ FSQ+G + R+ + TG S+G F+ F+ A+ + +
Sbjct: 151 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 210
Query: 107 N 107
N
Sbjct: 211 N 211
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V +L DE+ ++ F FG V ++ R T KG+ FV + D A + ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 107 NNYLFGERLLECHFMPPEKVHK 128
N Y G+R+L+ F K HK
Sbjct: 345 NGYRLGDRVLQVSF-KTNKAHK 365
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 49 VRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN 108
V +LP + + + S F G + +L R K TG S GY FV + A+ T+N
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109
Query: 109 YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKK 168
+ ++ + P +D N+ Y S +T+TQK +E+ F +
Sbjct: 110 LRLQTKTIKVSYARPSSAS---IRDANL------YVS----GLPKTMTQK-ELEQLFSQY 155
Query: 169 ERLLRKKL 176
R++ ++
Sbjct: 156 GRIITSRI 163
Score = 36.2 bits (82), Expect = 0.035
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV LP + + ++ FSQ+G + R+ + TG S+G F+ F+ A+ + +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 107 N 107
N
Sbjct: 194 N 194
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 47.8 bits (112), Expect = 1e-05
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRF-RLSRSKRTGNSKGYAFVEFESEDVAKIVAET 105
+++ +L +DE ++ FS FG + + ++ R TGNSKGYAF+ F S D + E
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 106 MN 107
MN
Sbjct: 162 MN 163
Score = 41.6 bits (96), Expect = 8e-04
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 40 EQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVA 99
E+ VYV L + E ++ F Q G V + + + TG +GY FVEF SE+ A
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 100 KIVAETMN 107
+ MN
Sbjct: 68 DYAIKIMN 75
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 201 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 259
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 260 KIVGSQIH 267
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 366 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 424
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 425 KIVGSQIH 432
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 201 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 259
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 260 KIVGSQIH 267
>gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]
Length = 390
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
>gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]
Length = 558
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
>gi|54292110 deleted in azoospermia 3 [Homo sapiens]
Length = 438
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
>gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]
Length = 366
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
>gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]
Length = 534
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 41 QLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESE-DVA 99
++ P V+V + +DET+I S F ++G+V ++ + RTG SKGY FV F ++ DV
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKII-TNRTGVSKGYGFVSFVNDVDVQ 94
Query: 100 KIVAETMN 107
KIV ++
Sbjct: 95 KIVGSQIH 102
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 47.0 bits (110), Expect = 2e-05
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 30 RKRITQRKKQEQLTP--GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKG 87
+ R+ +R+ QL P ++ V +LP L + Q FG++ R L S+RTG SKG
Sbjct: 132 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 191
Query: 88 YAFVEFESEDVAKIVAETMNNYLFGERLLECHF 120
Y F E+ +D A + G R L H+
Sbjct: 192 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 224
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 46.6 bits (109), Expect = 3e-05
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 28 QVRKRITQRKKQEQLTPGV----VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTG 83
Q +++ Q+++Q+Q G +++ HLP +++I F FG V ++ + T
Sbjct: 359 QQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATN 418
Query: 84 NSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHK 128
SK + FV F++ A+ + MN + G + L+ P+ ++
Sbjct: 419 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 35.0 bits (79), Expect = 0.078
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVA 99
++V +P L+E + F QFG + + + K TG KG AF+ + + D A
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSA 61
Score = 28.9 bits (63), Expect = 5.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
++V L + + F FGT+ + R G SKG AFV+F++ A+ T+
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP-DGTSKGCAFVKFQTHAEAQAAINTL 155
Query: 107 NN 108
++
Sbjct: 156 HS 157
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 46.6 bits (109), Expect = 3e-05
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104
G V++++L +D ++ FS FG + ++ + SKGYAFV FE+++ A E
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIE 156
Query: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEER 164
MN L +R + F+ K KE + K+ + +K + ++E
Sbjct: 157 KMNGMLLNDRKV---FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE---VDDESLKEL 210
Query: 165 FKKKERLLRKKLAK--KGIDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTL- 221
F + + L K+ + G F + +K E +K V K++SG +
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA---------VEEMNGKEISGKII 261
Query: 222 --DTPEKTVDSQGPTPVCTPTFLERRKSQVAELN------DDDKDDEIVFKQ 265
+K V+ Q + R S+ +N DD DDE + K+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 313
Score = 46.2 bits (108), Expect = 3e-05
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 17 QEDVEFQKEVAQVRKRITQRKKQEQLT--PGV-VYVRHLPNLLDETQIFSYFSQFGTVTR 73
Q+ VE Q E+ KR ++ KQE+++ GV +Y+++L + +D+ ++ FS FG++T
Sbjct: 267 QKKVERQAEL----KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 74 FRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLL 116
++ G SKG+ FV F S + A MN + G + L
Sbjct: 323 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 37.7 bits (86), Expect = 0.012
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV L + + E ++ FS G V R+ R T S GYA+V F+ A+ +TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 107 N 107
N
Sbjct: 73 N 73
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 46.6 bits (109), Expect = 3e-05
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104
G V++++L +D ++ FS FG + ++ + SKGYAFV FE+++ A E
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIE 156
Query: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEER 164
MN L +R + F+ K KE + K+ + +K + ++E
Sbjct: 157 KMNGMLLNDRKV---FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE---VDDESLKEL 210
Query: 165 FKKKERLLRKKLAK--KGIDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTL- 221
F + + L K+ + G F + +K E +K V K++SG +
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA---------VEEMNGKEISGKII 261
Query: 222 --DTPEKTVDSQGPTPVCTPTFLERRKSQVAELN------DDDKDDEIVFKQ 265
+K V+ Q + R S+ +N DD DDE + K+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 313
Score = 46.2 bits (108), Expect = 3e-05
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 17 QEDVEFQKEVAQVRKRITQRKKQEQLT--PGV-VYVRHLPNLLDETQIFSYFSQFGTVTR 73
Q+ VE Q E+ KR ++ KQE+++ GV +Y+++L + +D+ ++ FS FG++T
Sbjct: 267 QKKVERQAEL----KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 74 FRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLL 116
++ G SKG+ FV F S + A MN + G + L
Sbjct: 323 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 37.7 bits (86), Expect = 0.012
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV L + + E ++ FS G V R+ R T S GYA+V F+ A+ +TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 107 N 107
N
Sbjct: 73 N 73
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 46.6 bits (109), Expect = 3e-05
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 28/232 (12%)
Query: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104
G V++++L +D ++ FS FG + ++ + SKGYAFV FE+++ A E
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIE 156
Query: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEER 164
MN L +R + F+ K KE + K+ + +K + ++E
Sbjct: 157 KMNGMLLNDRKV---FVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE---VDDESLKEL 210
Query: 165 FKKKERLLRKKLAK--KGIDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTL- 221
F + + L K+ + G F + +K E +K V K++SG +
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA---------VEEMNGKEISGKII 261
Query: 222 --DTPEKTVDSQGPTPVCTPTFLERRKSQVAELN------DDDKDDEIVFKQ 265
+K V+ Q + R S+ +N DD DDE + K+
Sbjct: 262 FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 313
Score = 46.2 bits (108), Expect = 3e-05
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 17 QEDVEFQKEVAQVRKRITQRKKQEQLT--PGV-VYVRHLPNLLDETQIFSYFSQFGTVTR 73
Q+ VE Q E+ KR ++ KQE+++ GV +Y+++L + +D+ ++ FS FG++T
Sbjct: 267 QKKVERQAEL----KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS 322
Query: 74 FRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLL 116
++ G SKG+ FV F S + A MN + G + L
Sbjct: 323 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 37.7 bits (86), Expect = 0.012
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
+YV L + + E ++ FS G V R+ R T S GYA+V F+ A+ +TM
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 107 N 107
N
Sbjct: 73 N 73
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 46.6 bits (109), Expect = 3e-05
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106
VYV +LP L ++ FS++G V + + + K T SKG AF+ F +D A+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 107 NNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRME-ERF 165
NN R+++ E + N K Y + + + + + E E
Sbjct: 72 NNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPKNMLGEREPP 131
Query: 166 KKKERLLRKK 175
KKKE+ +KK
Sbjct: 132 KKKEKKKKKK 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,521,361
Number of Sequences: 37866
Number of extensions: 518479
Number of successful extensions: 2691
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 2242
Number of HSP's gapped (non-prelim): 515
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.