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Search of human proteins with 22219471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22219471 testes development-related NYD-SP22 isoform 3 [Homo
sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22219471 testes development-related NYD-SP22 isoform 3 [Homo ... 250 2e-67
gi|21362074 testes development-related NYD-SP22 isoform 1 [Homo ... 110 2e-25
gi|22219469 testes development-related NYD-SP22 isoform 2 [Homo ... 110 2e-25
gi|126090909 engrailed homeobox 1 [Homo sapiens] 28 1.2
gi|38373677 guanine nucleotide-releasing factor 2 isoform b [Hom... 28 1.6
gi|38373675 guanine nucleotide-releasing factor 2 isoform a [Hom... 28 1.6
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 28 2.1
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 28 2.1
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 27 2.7
gi|94557297 mitogen-activated protein kinase 8 interacting prote... 27 2.7
gi|39780552 Vac14 homolog [Homo sapiens] 27 2.7
gi|30387642 late cornified envelope 4A [Homo sapiens] 27 3.5
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 27 3.5
gi|59709427 XK, Kell blood group complex subunit-related family,... 27 3.5
gi|21389535 T-complex 10A-2 [Homo sapiens] 27 4.6
gi|5174517 SMAD family member 7 [Homo sapiens] 27 4.6
gi|22748943 hypothetical protein LOC145483 [Homo sapiens] 27 4.6
gi|38348348 TBC1 domain family, member 10C [Homo sapiens] 27 4.6
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 26 6.0
gi|42766424 hypothetical protein LOC389119 [Homo sapiens] 26 6.0
gi|4502285 ATPase, Ca++ transporting, slow twitch 2 isoform 2 [H... 26 7.8
gi|24638454 ATPase, Ca++ transporting, slow twitch 2 isoform 1 [... 26 7.8
gi|209413709 ATPase, Ca++ transporting, slow twitch 2 isoform 3 ... 26 7.8
gi|10835220 ATPase, Ca++ transporting, fast twitch 1 isoform b [... 26 7.8
gi|27886529 ATPase, Ca++ transporting, fast twitch 1 isoform a [... 26 7.8
gi|146134388 YLP motif containing 1 [Homo sapiens] 26 7.8
>gi|22219471 testes development-related NYD-SP22 isoform 3 [Homo
sapiens]
Length = 111
Score = 250 bits (638), Expect = 2e-67
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGMQ 60
METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGMQ
Sbjct: 1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGMQ 60
Query: 61 CAVTTPPPSYYPYPNLRWDTSHFKKSGGPQRNNYVIHPEFVSETYPDYRCW 111
CAVTTPPPSYYPYPNLRWDTSHFKKSGGPQRNNYVIHPEFVSETYPDYRCW
Sbjct: 61 CAVTTPPPSYYPYPNLRWDTSHFKKSGGPQRNNYVIHPEFVSETYPDYRCW 111
>gi|21362074 testes development-related NYD-SP22 isoform 1 [Homo
sapiens]
Length = 262
Score = 110 bits (275), Expect = 2e-25
Identities = 52/56 (92%), Positives = 52/56 (92%)
Query: 1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHR 56
METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCV P R
Sbjct: 136 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGR 191
>gi|22219469 testes development-related NYD-SP22 isoform 2 [Homo
sapiens]
Length = 127
Score = 110 bits (275), Expect = 2e-25
Identities = 52/56 (92%), Positives = 52/56 (92%)
Query: 1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHR 56
METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCV P R
Sbjct: 1 METAVRGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGR 56
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 38 QQLPRITPRCGCVPPYEHRPGMQCAVTTPPPSYYPYP 74
Q P P C+PP H P + PPP + P
Sbjct: 53 QPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAAP 89
>gi|38373677 guanine nucleotide-releasing factor 2 isoform b [Homo
sapiens]
Length = 1095
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 9 PLECPPRPERLNAYEREV-MVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGMQCAVTTPP 67
P P P L +REV ++N +S++ +L PP PG++ +PP
Sbjct: 242 PASKPDGPAELPLTDREVEILNKTTGMSQSTELLPDATDEEVAPPKPPLPGIRVVDNSPP 301
Query: 68 PSYYP 72
P+ P
Sbjct: 302 PALPP 306
>gi|38373675 guanine nucleotide-releasing factor 2 isoform a [Homo
sapiens]
Length = 1077
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 9 PLECPPRPERLNAYEREV-MVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGMQCAVTTPP 67
P P P L +REV ++N +S++ +L PP PG++ +PP
Sbjct: 224 PASKPDGPAELPLTDREVEILNKTTGMSQSTELLPDATDEEVAPPKPPLPGIRVVDNSPP 283
Query: 68 PSYYP 72
P+ P
Sbjct: 284 PALPP 288
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 36 RNQQLPRITPRCGCVPPYEHRPGMQCAVTTPPP 68
R ++ P+ +P C C P ++ +PG + P P
Sbjct: 106 RRREAPKTSPGCNCPPVFQGQPGTRGFPGFPGP 138
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 36 RNQQLPRITPRCGCVPPYEHRPGMQCAVTTPPP 68
R ++ P+ +P C C P ++ +PG + P P
Sbjct: 106 RRREAPKTSPGCNCPPVFQGQPGTRGFPGFPGP 138
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 64 TTPPPSYYPYPNLRWDTSHFKKSGGPQRNNYVIHPEFVS----ETYPDYRC 110
++PPP+ PYP++ +G QR N+ + P E +PD C
Sbjct: 578 SSPPPAKRPYPSVNIHYKSPTTAGFSQRRNHAMCPISAGSRPLEFFPDDDC 628
>gi|94557297 mitogen-activated protein kinase 8 interacting protein
3 isoform 1 [Homo sapiens]
Length = 1336
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 64 TTPPPSYYPYPNLRWDTSHFKKSGGPQRNNYVIHPEFVS----ETYPDYRC 110
++PPP+ PYP++ +G QR N+ + P E +PD C
Sbjct: 584 SSPPPAKRPYPSVNIHYKSPTTAGFSQRRNHAMCPISAGSRPLEFFPDDDC 634
>gi|39780552 Vac14 homolog [Homo sapiens]
Length = 782
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 10 LECPPRPERLNAYEREVMVNMLNSLSRNQQL 40
LEC P +N+Y + M+N+L S ++L
Sbjct: 514 LECSPSTPTMNSYFYKFMINLLKRFSSERKL 544
>gi|30387642 late cornified envelope 4A [Homo sapiens]
Length = 99
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 SLSRNQQLPRITPRCGCVPPYEHRPGMQCAVTTPPP 68
S +NQQ + P+C +P Y + +CA + PPP
Sbjct: 2 SCQQNQQQCQPPPKCP-IPKYPPKCPSKCASSCPPP 36
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 5 VRGMPLECPPRPER---LNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGMQC 61
++G + PPR + LNA E + +++NQ +P++ P+ +PP P Q
Sbjct: 450 LQGQSKDMPPRFSKKGQLNADEISLRPAQSFLMNKNQ-VPKLQPQITMIPPSAQPPRTQ- 507
Query: 62 AVTTPPPSYYPYPNLR 77
TPP P L+
Sbjct: 508 ---TPPLGQTPQLGLK 520
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 25 EVMVNMLNSLSRNQQL-----PRITPRCGCVPPYEHRPGMQCAVTTPPP 68
+V + L S+S N+ + + R GCVP ++ RP ++ PP
Sbjct: 540 DVATSTLRSISNNRSVVSDRDQKFAERDGCVPVFQVRPTAPSTPSSRPP 588
>gi|21389535 T-complex 10A-2 [Homo sapiens]
Length = 215
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 13 PPRP-----ERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHRPGM 59
PP+P ER+++++ N +LSR +Q R TP P E R G+
Sbjct: 164 PPKPMSLKIERISSWKTPPQENRDKNLSRRRQDRRATPTGRPTPCAERRGGV 215
>gi|5174517 SMAD family member 7 [Homo sapiens]
Length = 426
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 42 RITPRCGCVPPYEHRPGMQCAVTTPPPSYYPYP 74
+I P C P H C + +PPP Y YP
Sbjct: 185 KINPELVCCNP--HHLSRLCELESPPPPYSRYP 215
>gi|22748943 hypothetical protein LOC145483 [Homo sapiens]
Length = 647
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 6 RGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVPPYEHR--PGMQCAV 63
RGM P+ R + R + LN+L N P+ P G PP +HR ++
Sbjct: 113 RGMVQVQCPQALRCGSTRR---CSSLNNLPSNIPRPQTQPPSGSRPPSQHRSVSSWASSI 169
Query: 64 TTPPP 68
T P P
Sbjct: 170 TVPRP 174
>gi|38348348 TBC1 domain family, member 10C [Homo sapiens]
Length = 446
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 3 TAVRGMPLECPPRPER 18
T RG P+E PPRP+R
Sbjct: 421 TRARGPPIEGPPRPQR 436
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 40 LPRITPRCGCVPPYEHRP 57
LPR RCGC + HRP
Sbjct: 1219 LPRRRARCGCPRSHPHRP 1236
>gi|42766424 hypothetical protein LOC389119 [Homo sapiens]
Length = 287
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 3 TAVRGMPLECPPRPE 17
TA+ G L CPPRPE
Sbjct: 243 TAMAGKRLSCPPRPE 257
>gi|4502285 ATPase, Ca++ transporting, slow twitch 2 isoform 2 [Homo
sapiens]
Length = 997
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 27 MVNMLNSLSRNQQLPRITP 45
M N LNSLS NQ L R+ P
Sbjct: 908 MCNALNSLSENQSLLRMPP 926
>gi|24638454 ATPase, Ca++ transporting, slow twitch 2 isoform 1
[Homo sapiens]
Length = 1042
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 27 MVNMLNSLSRNQQLPRITP 45
M N LNSLS NQ L R+ P
Sbjct: 908 MCNALNSLSENQSLLRMPP 926
>gi|209413709 ATPase, Ca++ transporting, slow twitch 2 isoform 3
[Homo sapiens]
Length = 1015
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 27 MVNMLNSLSRNQQLPRITP 45
M N LNSLS NQ L R+ P
Sbjct: 881 MCNALNSLSENQSLLRMPP 899
>gi|10835220 ATPase, Ca++ transporting, fast twitch 1 isoform b
[Homo sapiens]
Length = 994
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 27 MVNMLNSLSRNQQLPRITP 45
M N LNSLS NQ L R+ P
Sbjct: 909 MCNALNSLSENQSLLRMPP 927
>gi|27886529 ATPase, Ca++ transporting, fast twitch 1 isoform a
[Homo sapiens]
Length = 1001
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 27 MVNMLNSLSRNQQLPRITP 45
M N LNSLS NQ L R+ P
Sbjct: 909 MCNALNSLSENQSLLRMPP 927
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 45 PRCGCVPPYEHRPGMQCAVTTP--PPSYYP 72
P VPP + P Q + P PPSYYP
Sbjct: 147 PESPPVPPGSYMPPSQSYMPPPQPPPSYYP 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,327,874
Number of Sequences: 37866
Number of extensions: 323359
Number of successful extensions: 816
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 26
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.