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Search of human proteins with 22208979
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22208979 high mobility group AT-hook 1 isoform b [Homo
sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens] 195 6e-51
gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens] 195 6e-51
gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens] 195 6e-51
gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens] 195 6e-51
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens] 187 2e-48
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens] 187 2e-48
gi|239753198 PREDICTED: hypothetical protein [Homo sapiens] 179 6e-46
gi|239747772 PREDICTED: hypothetical protein [Homo sapiens] 179 6e-46
gi|239741638 PREDICTED: hypothetical protein [Homo sapiens] 179 6e-46
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 85 1e-17
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 77 4e-15
gi|145199237 transcription elongation factor B polypeptide 3 bin... 45 2e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 40 3e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 39 7e-04
gi|125656165 THO complex 2 [Homo sapiens] 39 0.001
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 39 0.001
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 38 0.002
gi|157266334 tubby like protein 1 [Homo sapiens] 38 0.002
gi|112421108 capicua homolog [Homo sapiens] 38 0.002
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 38 0.002
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 38 0.002
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 38 0.002
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 38 0.002
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 38 0.002
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 37 0.003
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 37 0.003
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|4885375 histone cluster 1, H1c [Homo sapiens] 37 0.003
>gi|22208979 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208973 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208975 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 195 bits (496), Expect = 6e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 187 bits (474), Expect = 2e-48
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP KEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
Query: 50 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
>gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 187 bits (474), Expect = 2e-48
Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP KEPSEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
Query: 50 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
>gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 179 bits (453), Expect = 6e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
>gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 179 bits (453), Expect = 6e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
>gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 179 bits (453), Expect = 6e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 85.1 bits (209), Expect = 1e-17
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 16/110 (14%)
Query: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
Query: 58 AAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEEE 95
+K +K T ++PRGRP+K ++E EE SQES+EE+
Sbjct: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo
sapiens]
Length = 106
Score = 76.6 bits (187), Expect = 4e-15
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
Query: 58 AAKT--RKTTTTPGRKPRGRPKK 78
+K +K T ++PRGRP+K
Sbjct: 60 PSKAAQKKAEATGEKRPRGRPRK 82
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 44.7 bits (104), Expect = 2e-05
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 16 QEKDGTEKRGRGRPRKQP--PKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR--K 71
Q KD T+ +GRGRP ++P K+ + +P+R RP+G+K K ++ T T+ GR +
Sbjct: 394 QGKDKTKDKGRGRPVEKPRADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDR 453
Query: 72 PRGRP 76
P RP
Sbjct: 454 PARRP 458
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 40.4 bits (93), Expect = 3e-04
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 31 KQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEG-ISQ 89
K+ P+E E P P++P R + + GA + + + GR PRG +KL +E+ S+
Sbjct: 876 KRRPEEQEEEPQPRKPGTRRE--RTLGAPASSERSAAGGRGPRGHKRKLNEEDAASESSR 933
Query: 90 ESSEEEQ 96
ESS E++
Sbjct: 934 ESSNEDE 940
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 2 SESSSKSSQPLASKQEKDGTEK--RGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAA 59
SESSS+S +S DG + RGR +P+ P + GRP G A
Sbjct: 458 SESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEA 517
Query: 60 KTRKTTTTPGRKPRGRPKKLEKEEE 84
+ PG + +L +EE
Sbjct: 518 E-------PGAHAPDKEPELGGQEE 535
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 40.4 bits (93), Expect = 3e-04
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 14 SKQEKDGTEKRGRGRPRKQPPKEPSEVPT---PKRPRGR-PKGSKNKGAAKTRKTTTTPG 69
+K+ DG +K PR++ K P+ P K+PR R PK +K++G K+ + G
Sbjct: 392 AKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGG----KSRSGGG 447
Query: 70 RKPRGRPKKLEKEEEEGISQESSEEEQ 96
+KPR R +K ++ E ++ +++Q
Sbjct: 448 KKPRRRGQKARQKAAEAGAESRGDKKQ 474
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPK---EPSEVPTPK---RPRGRPKGSKNKGAAK 60
+ ++ K G + RGR +PR+Q P S V K R + G+ + G
Sbjct: 504 QKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGG 563
Query: 61 TRKTTTTPGRKPR 73
+++ G KPR
Sbjct: 564 NKQSRGGGGNKPR 576
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 39.3 bits (90), Expect = 7e-04
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKT 61
SE + + K+E++ KR RG+ K+ K KR RG+ + K K K
Sbjct: 34 SERKKERREREKRKREREKERKRERGKKEKKKRK--------KRERGKERERKRKEREKQ 85
Query: 62 RKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
RK R+ R + KK + ++ G + ++E+
Sbjct: 86 RKERREKERRKRKKEKKKRERKQRGRRERKKKKER 120
Score = 37.0 bits (84), Expect = 0.003
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 15 KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG 74
K+EK +KR RG+ R++ KE + +R + R K K K K R+ RK RG
Sbjct: 60 KKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEK---KKRE------RKQRG 110
Query: 75 RPKKLEKEEEEGISQESSEEEQ 96
R ++ +K+E + +E+ + +
Sbjct: 111 RRERKKKKERKERERENKQRRE 132
Score = 37.0 bits (84), Expect = 0.003
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 15 KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG 74
K+EK E++ RGR ++ KE E + R K K + + ++ R R
Sbjct: 98 KKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRE 157
Query: 75 RPKKLEKEEEEGISQESSEEEQ 96
R +K K+EE +E + +E+
Sbjct: 158 RKRKKRKKEEREKKRERNRKER 179
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 14 SKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRG-RPKGSKNKGAAKTRKTTTTPGRKP 72
+KQ ++ K+ R + R++ K E +R R R K + K + RK +
Sbjct: 127 NKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERK 186
Query: 73 RGRPKKLEKEEEEGISQESSEEEQ 96
R +K E+++E +E ++ +
Sbjct: 187 ERRERKKERKKERRKKKERKKDRK 210
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAA------K 60
K + ++EK E+R + R +++ K+ E ++ RGR + K K K
Sbjct: 73 KERERKRKEREKQRKERREKERRKRKKEKKKRE----RKQRGRRERKKKKERKERERENK 128
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEG 86
R+ R+ + R K+ ++E+E G
Sbjct: 129 QRRERKRKKRRKKKRRKERKREKERG 154
>gi|125656165 THO complex 2 [Homo sapiens]
Length = 1593
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
+ + ++ P A KDG EK RP K ++ TPK + + K K + A +
Sbjct: 1282 KEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKERTPKSDKEKEKFKKEEKAKDEK 1341
Query: 63 KTTTTPGRKPRG---RPKKLEKEEEEGISQESSEEE 95
TT P + + R ++ E E I++E +E
Sbjct: 1342 FKTTVPNAESKSTQEREREKEPSRERDIAKEMKSKE 1377
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 6 SKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTT 65
S SS ASK ++ TE+ + R R Q + + P+G S N +
Sbjct: 1209 SSSSIGSASKSDESSTEETDKSRERSQCGVKAVNKASSTTPKG---NSSNGNSGSNSNKA 1265
Query: 66 TTPGRKPRGRPKKLEKEEE 84
K +G+ K+ EK+E+
Sbjct: 1266 VKENDKEKGKEKEKEKKEK 1284
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 4 SSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRK 63
S S S++ + ++ G EK + + K P P K + +PK + K R+
Sbjct: 1258 SGSNSNKAVKENDKEKGKEKE-KEKKEKTPATTPEARVLGKDGKEKPKEERPNKDEKARE 1316
Query: 64 TTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
T + R K +KE+E+ +E +++E+
Sbjct: 1317 T--------KERTPKSDKEKEKFKKEEKAKDEK 1341
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 15 KQEKDGT---EKRGRGRPRKQP-PKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR 70
++E++GT K P + P P E + + G+ KGS + + K K ++ +
Sbjct: 1500 RKEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKK 1559
Query: 71 KPRGRPKKLEKEEEEGISQESSEEE 95
+ R +K+EK+E+ S E++
Sbjct: 1560 ESRHDKEKIEKKEKRDSSGGKEEKK 1584
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 38.5 bits (88), Expect = 0.001
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPR------GRPKGSKN 55
SE + + K+E++ KR RG+ K+ ++ E KR R G K +
Sbjct: 57 SERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRK 116
Query: 56 KGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
K K R T+ G++ R +K E++ EE +E +EE+
Sbjct: 117 KKEKKERGRTSKEGKE---RERKEERKREERKERERKKEER 154
Score = 34.3 bits (77), Expect = 0.022
Identities = 20/94 (21%), Positives = 38/94 (40%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
E K + K+E+ T K G+ R RK+ K ++ R K + K K
Sbjct: 108 EGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERKKRE 167
Query: 63 KTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
+ + R ++ E+++ E +E +E +
Sbjct: 168 RKQVGEKEEERKEKERKERKKRERNRKERKKERE 201
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 15 KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGR-PKGSKNKGAAKTRKTTTTPGRKPR 73
K+E+ +KR R + K+ ++ K+ RGR K K + + RK RK R
Sbjct: 91 KKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREE---RKER 147
Query: 74 GRPKKLEKEEEEGISQESSEEEQ 96
R K+ ++E E ++ E +Q
Sbjct: 148 ERKKEEREKERERKERKKRERKQ 170
Score = 29.3 bits (64), Expect = 0.71
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTT 66
K ++ K+++ EK+ RGR K+ KE KR + + K + K R+
Sbjct: 104 KENKEGEEKEKRKKKEKKERGRTSKE-GKERERKEERKREERKERERKKEEREKERERKE 162
Query: 67 TPGRKPRGRPKKLEKEEE 84
RK R R + EKEEE
Sbjct: 163 ---RKKRERKQVGEKEEE 177
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTT 66
K + ++EK+ K + R RKQ E E K + R K +N+ K +
Sbjct: 145 KERERKKEEREKERERKERKKRERKQ-VGEKEEERKEKERKERKKRERNRKERKKERERK 203
Query: 67 TPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
+ + R KK E+++E ++++ E+
Sbjct: 204 ERRERKKERKKKEERKKERQKDRQTNWREK 233
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 15 KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG 74
++EK+ E++ R R RK+ KE +R + R K + K + + T K RG
Sbjct: 178 RKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERK-KERQKDRQTNWREKERG 236
Query: 75 RPKKLEKEE 83
+ ++ E+++
Sbjct: 237 KRERKERKK 245
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 38.5 bits (88), Expect = 0.001
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 12 LASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPR--------GRPKGSKNKGAA-KTR 62
L QE+ +KR + + + PKEP E PK P+ PK K K A K +
Sbjct: 634 LDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPK 693
Query: 63 KTTTTPGRKPRGRPKKLEKEEEEGISQESSEEE 95
+ + +KP L+K+ +G ++ S +
Sbjct: 694 SSKKSSNKKPDSEASALKKKVNKGKTEGSENSD 726
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 38.1 bits (87), Expect = 0.002
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 6 SKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTT 65
++ ++ ++EK+G K R RK+ K+ T KR + K K
Sbjct: 13 TEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRK--------- 63
Query: 66 TTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
RK + + ++ E+EEEE +E EEE+
Sbjct: 64 ----RKRKKKKEEEEREEEEEEEEEEKEEEE 90
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 22 EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG-----RP 76
+K+ + + +E E + R + K K K +KT T RK + R
Sbjct: 4 KKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRK 63
Query: 77 KKLEKEEEEGISQESSEEEQ 96
+K +K++EE +E EEE+
Sbjct: 64 RKRKKKKEEEEREEEEEEEE 83
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
+ K ++ ++EK+ EK+ + + +K+ +E E + + + K +
Sbjct: 40 KEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEE------ 93
Query: 63 KTTTTPGRKPRGRPKKLEKEEEE 85
GR+ + + K+ KEEEE
Sbjct: 94 ------GRRRKKKKKRRRKEEEE 110
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 28 RPRKQPPKEPSEVP-TPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEE 85
+ +K+ KE E T + K K K K ++ +K + K+ EKEEEE
Sbjct: 1 KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEE 59
>gi|157266334 tubby like protein 1 [Homo sapiens]
Length = 542
Score = 38.1 bits (87), Expect = 0.002
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGR----PKGSKNKGAAKTR 62
+S P SK K G + GR PR++P +P++ P+ R P+ K +
Sbjct: 50 ESPCPTGSKPRKPGAGRTGR--PREEPSPDPAQARAPQTVYARFLRDPEAKK-----RDP 102
Query: 63 KTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
+ T R P ++ E+EE+E +E +EE++
Sbjct: 103 RETFLVARAPDAEDEEEEEEEDEEDEEEEAEEKK 136
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKR---------PRGRPK 51
+ E +K+ P D K R R ++ P E +++ K+ P G P
Sbjct: 155 LKERRAKAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGEADKDPSGSPA 214
Query: 52 GSKNKGAAKTRKTTTTPGRKP---RGRPKKLEKEEEE 85
++ AA +P +K +G PK KEEEE
Sbjct: 215 SARKSPAAMFLVGEGSPDKKALKKKGTPKGARKEEEE 251
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 10 QPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGR--PKGSKNKGAAKTRKTTTT 67
+PL K D E+R + + + P P P R R + P G K +K +
Sbjct: 145 KPLREKSSADLKERRAKAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGE 204
Query: 68 PGRKPRGRPKKLEK 81
+ P G P K
Sbjct: 205 ADKDPSGSPASARK 218
Score = 26.6 bits (57), Expect = 4.6
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 22/84 (26%)
Query: 21 TEKRGRGRPRKQPPKEPSEV--------------PTPK--RPRGRPKGSKNKG-----AA 59
T+K+G G K P P+ P K + +G PKG++ + AA
Sbjct: 197 TKKKGSGEADKDPSGSPASARKSPAAMFLVGEGSPDKKALKKKGTPKGARKEEEEEEEAA 256
Query: 60 KTRKTTTTPGRKPRGRPKKLEKEE 83
K + G K +G+ KK KEE
Sbjct: 257 TVIKKSNQKG-KAKGKGKKKAKEE 279
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 4 SSSKSSQPLASKQEKDGTEKRGRGRP---RKQPPKEPSEVPTPK-RPRGRPKGSKNKGAA 59
+S+K + +ASK ++ R G+ R +PP PS P P P G + S + A
Sbjct: 1257 TSAKGPETMASKFPSSSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAG 1316
Query: 60 KT--RKTTTTPGRKPRGRPKKLEK 81
T RK G+K + RP L+K
Sbjct: 1317 DTPERKEAAGTGKKVKVRPPPLKK 1340
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTT 66
KS P + + G +G G+P+ PP+ ++ P P G+P+G +G +K++ +
Sbjct: 86 KSRSPRSPPGKPQGPPPQG-GKPQGPPPQGGNKPQGPPPP-GKPQGPPAQGGSKSQSARS 143
Query: 67 TPGRKPRGRPKK 78
PG KP+G P++
Sbjct: 144 PPG-KPQGPPQQ 154
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPR---------KQPPKEPSEVPTPKRPRGRPK 51
++E S+ P G +G +P+ + PP + P P G+P+
Sbjct: 19 LNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 78
Query: 52 GSKNKGAAKTRKTTTTPGRKPRGRP 76
G +G K+R + PG KP+G P
Sbjct: 79 GPPPQG-DKSRSPRSPPG-KPQGPP 101
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVP--------TPKRPRGRPKGSK 54
+ +K P + G +G +P+ PP + P +P+ P G+P+G
Sbjct: 42 QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP 101
Query: 55 NKGAAKTRKTTTTPGRKPRGRP 76
+G K + G KP+G P
Sbjct: 102 PQG-GKPQGPPPQGGNKPQGPP 122
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGR-GRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
+E S S +++ + +KRGR GR R P SE P + K A K
Sbjct: 362 AERGSGGSSGDELREDDEPVKKRGRKGRGRGPPSSSDSE------PEAELEREAKKSAKK 415
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEE 85
+ ++T P RKP + K++ EE++
Sbjct: 416 PQSSSTEPARKPGQKEKRVRPEEKQ 440
Score = 34.3 bits (77), Expect = 0.022
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGR-PRKQP-PKEPSEVPTPKRPRGRPKGSKNKGA 58
M+ S+S SS +S +K RGR P ++P PK P P+RP P S +
Sbjct: 250 MARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERP---PSSSSSDSD 306
Query: 59 AKTRKTTTTPGRKPRGRPKKLE----KEEEEGI----SQESSEEEQ 96
+ + R+ R ++LE +E+EE + QE E+E+
Sbjct: 307 SDEVDRISEWKRRDEARRRELEARRRREQEEELRRLREQEKEEKER 352
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/90 (18%), Positives = 31/90 (34%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
++SS Q S E++ +E P + + PR P G + K A +
Sbjct: 172 KASSDLDQASVSPSEEENSESSSESEKTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSA 231
Query: 63 KTTTTPGRKPRGRPKKLEKEEEEGISQESS 92
+ + +P+ + S SS
Sbjct: 232 SDSDSKADSDGAKPEPVAMARSASSSSSSS 261
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGR-GRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
+E S S +++ + +KRGR GR R P SE P + K A K
Sbjct: 362 AERGSGGSSGDELREDDEPVKKRGRKGRGRGPPSSSDSE------PEAELEREAKKSAKK 415
Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEE 85
+ ++T P RKP + K++ EE++
Sbjct: 416 PQSSSTEPARKPGQKEKRVRPEEKQ 440
Score = 34.3 bits (77), Expect = 0.022
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 1 MSESSSKSSQPLASKQEKDGTEKRGRGR-PRKQP-PKEPSEVPTPKRPRGRPKGSKNKGA 58
M+ S+S SS +S +K RGR P ++P PK P P+RP P S +
Sbjct: 250 MARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERP---PSSSSSDSD 306
Query: 59 AKTRKTTTTPGRKPRGRPKKLE----KEEEEGI----SQESSEEEQ 96
+ + R+ R ++LE +E+EE + QE E+E+
Sbjct: 307 SDEVDRISEWKRRDEARRRELEARRRREQEEELRRLREQEKEEKER 352
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/90 (18%), Positives = 31/90 (34%)
Query: 3 ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
++SS Q S E++ +E P + + PR P G + K A +
Sbjct: 172 KASSDLDQASVSPSEEENSESSSESEKTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSA 231
Query: 63 KTTTTPGRKPRGRPKKLEKEEEEGISQESS 92
+ + +P+ + S SS
Sbjct: 232 SDSDSKADSDGAKPEPVAMARSASSSSSSS 261
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSK---NKGA 58
S S SK S+ +KR +GR R + K R R +GSK G+
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKR-KGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGS 390
Query: 59 AKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEE 94
+K +K T + R + + KE E S+ S E
Sbjct: 391 SKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQRE 426
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKG---SKNKGA 58
S S SK + + +EK + G+ R + + E G+PK S++K
Sbjct: 238 SRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK 297
Query: 59 AKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEE 95
+K+R R + +++E+E+ +S+ S+E+
Sbjct: 298 SKSRS---------RSQERRVEEEKRGSVSRGRSQEK 325
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 4 SSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRK 63
S K+ P A++ + +G +K+ + + +K+ KE E K P + + AK ++
Sbjct: 295 SEEKAETPTAAEDDNEGDKKK-KDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKE 353
Query: 64 TTTTPGRKPRGRPKKLE-----KEEEEGISQESSEEEQ 96
R+ R K+LE ++EEE + QE E ++
Sbjct: 354 EEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKK 391
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 7 KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGA------AK 60
K Q L SK+ + E +Q E E P P P + +++ G A
Sbjct: 453 KIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPPPVEPE-EEEDTEDAGLDDWEAMAS 511
Query: 61 TRKTTTTPGRKP----RGRPKKLEKEEEEGISQESSEEEQ 96
+T G K + P++ E+EEEE E SEEE+
Sbjct: 512 DEETEKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEE 551
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 13 ASKQEK--DGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR 70
A KQ K D E+R G P + P PS VP P P G P + AA GR
Sbjct: 251 AQKQVKKIDSCERRFLGGPARPPSPSPSPVPAPAPPPGPP-----RPAAAAATAPLANGR 305
Query: 71 KPRGRPKKLEKEEEE 85
+ RP +L E+
Sbjct: 306 AGKRRPSRLVALREQ 320
>gi|188497689 chromatin licensing and DNA replication factor 1
[Homo sapiens]
Length = 546
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/67 (29%), Positives = 28/67 (41%)
Query: 12 LASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRK 71
+ ++ D +R G PR PPK P+P RP R S G+ K + PGR
Sbjct: 1 MEQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRD 60
Query: 72 PRGRPKK 78
P +
Sbjct: 61 QARPPAR 67
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 17 EKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRP 76
EK+ K RGR +K K+ + T K+ + +K K KT+K TTT +
Sbjct: 18 EKESAWK--RGRKKKTTKKKKKKKTTMKKK--KKTTTKKKTTTKTKKRTTTTKKTTTTTT 73
Query: 77 KKLEKEEEEGISQESSEEEQ 96
K+ EKE+E+ +E +E++
Sbjct: 74 KEKEKEKEKEKEKEKEKEKE 93
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 21 TEKRG---RGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPK 77
TEK RGR +K K+ + T K+ + K K R TTT + K
Sbjct: 17 TEKESAWKRGRKKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEK 76
Query: 78 KLEKEEEEGISQESSEEEQ 96
+ EKE+E+ +E +E++
Sbjct: 77 EKEKEKEKEKEKEKEKEKE 95
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 2 SESSSKSSQPLASKQEKDGTEKRGRGRPRK-----QPPKEPSEVPTPKRPRGR-PKGSKN 55
+ S K ++ AS + K +K G +P+K + PK+ + TPK+ + PK +K
Sbjct: 101 ASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKK 160
Query: 56 KGAAK-TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSE 93
AA T+K +P + +PKK K + + ++++
Sbjct: 161 PAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKAAK 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.295 0.118 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,147,386
Number of Sequences: 37866
Number of extensions: 329937
Number of successful extensions: 4054
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 489
Number of HSP's that attempted gapping in prelim test: 2411
Number of HSP's gapped (non-prelim): 1853
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.