Guide to the Human Genome
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Search of human proteins with 22208975

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22208975 high mobility group AT-hook 1 isoform b [Homo
sapiens]
         (96 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens]    195   6e-51
gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens]    195   6e-51
gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]     195   6e-51
gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens]    195   6e-51
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]    187   2e-48
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]    187   2e-48
gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]           179   6e-46
gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]           179   6e-46
gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]           179   6e-46
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]      85   1e-17
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]     77   4e-15
gi|145199237 transcription elongation factor B polypeptide 3 bin...    45   2e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    40   3e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            40   3e-04
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            39   7e-04
gi|125656165 THO complex 2 [Homo sapiens]                              39   0.001
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            39   0.001
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    39   0.001
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi...    38   0.002
gi|157266334 tubby like protein 1 [Homo sapiens]                       38   0.002
gi|112421108 capicua homolog [Homo sapiens]                            38   0.002
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    38   0.002
gi|48255931 hepatoma-derived growth factor-related protein 2 iso...    38   0.002
gi|14249158 hepatoma-derived growth factor-related protein 2 iso...    38   0.002
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     38   0.002
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    38   0.002
gi|4557265 beta-1-adrenergic receptor [Homo sapiens]                   37   0.003
gi|188497689 chromatin licensing and DNA replication factor 1 [H...    37   0.003
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|4885375 histone cluster 1, H1c [Homo sapiens]                       37   0.003

>gi|22208979 high mobility group AT-hook 1 isoform b [Homo
          sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96


>gi|22208973 high mobility group AT-hook 1 isoform b [Homo
          sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96


>gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96


>gi|22208975 high mobility group AT-hook 1 isoform b [Homo
          sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96


>gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]
          Length = 107

 Score =  187 bits (474), Expect = 2e-48
 Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)

Query: 1   MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
           MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP           KEPSEVPTPKRPRGR
Sbjct: 1   MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60

Query: 50  PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
           PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61  PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107


>gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]
          Length = 107

 Score =  187 bits (474), Expect = 2e-48
 Identities = 96/107 (89%), Positives = 96/107 (89%), Gaps = 11/107 (10%)

Query: 1   MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 49
           MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP           KEPSEVPTPKRPRGR
Sbjct: 1   MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60

Query: 50  PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
           PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
Sbjct: 61  PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107


>gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 104

 Score =  179 bits (453), Expect = 6e-46
 Identities = 90/96 (93%), Positives = 92/96 (95%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96


>gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 104

 Score =  179 bits (453), Expect = 6e-46
 Identities = 90/96 (93%), Positives = 92/96 (95%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96


>gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 104

 Score =  179 bits (453), Expect = 6e-46
 Identities = 90/96 (93%), Positives = 92/96 (95%)

Query: 1  MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
          MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1  MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60

Query: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
          T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96


>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
          Length = 109

 Score = 85.1 bits (209), Expect = 1e-17
 Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 16/110 (14%)

Query: 1   MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
           MS     + QP  S Q +      +KRGRGRPRKQ  +EP+  P+PKRPRGRPKGSKNK 
Sbjct: 1   MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59

Query: 58  AAKT--RKTTTTPGRKPRGRPKK----------LEKEEEEGISQESSEEE 95
            +K   +K   T  ++PRGRP+K           ++E EE  SQES+EE+
Sbjct: 60  PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109


>gi|62912482 high mobility group AT-hook 2 isoform b [Homo
          sapiens]
          Length = 106

 Score = 76.6 bits (187), Expect = 4e-15
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)

Query: 1  MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
          MS     + QP  S Q +      +KRGRGRPRKQ  +EP+  P+PKRPRGRPKGSKNK 
Sbjct: 1  MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59

Query: 58 AAKT--RKTTTTPGRKPRGRPKK 78
           +K   +K   T  ++PRGRP+K
Sbjct: 60 PSKAAQKKAEATGEKRPRGRPRK 82


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 16  QEKDGTEKRGRGRPRKQP--PKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR--K 71
           Q KD T+ +GRGRP ++P   K+  +  +P+R   RP+G+K K ++ T   T+  GR  +
Sbjct: 394 QGKDKTKDKGRGRPVEKPRADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDR 453

Query: 72  PRGRP 76
           P  RP
Sbjct: 454 PARRP 458


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 31  KQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEG-ISQ 89
           K+ P+E  E P P++P  R +  +  GA  + + +   GR PRG  +KL +E+     S+
Sbjct: 876 KRRPEEQEEEPQPRKPGTRRE--RTLGAPASSERSAAGGRGPRGHKRKLNEEDAASESSR 933

Query: 90  ESSEEEQ 96
           ESS E++
Sbjct: 934 ESSNEDE 940



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 2   SESSSKSSQPLASKQEKDGTEK--RGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAA 59
           SESSS+S    +S    DG  +  RGR +P+  P    +         GRP      G A
Sbjct: 458 SESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEA 517

Query: 60  KTRKTTTTPGRKPRGRPKKLEKEEE 84
           +       PG     +  +L  +EE
Sbjct: 518 E-------PGAHAPDKEPELGGQEE 535


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 14  SKQEKDGTEKRGRGRPRKQPPKEPSEVPT---PKRPRGR-PKGSKNKGAAKTRKTTTTPG 69
           +K+  DG +K     PR++  K P+  P     K+PR R PK +K++G     K+ +  G
Sbjct: 392 AKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGG----KSRSGGG 447

Query: 70  RKPRGRPKKLEKEEEEGISQESSEEEQ 96
           +KPR R +K  ++  E  ++   +++Q
Sbjct: 448 KKPRRRGQKARQKAAEAGAESRGDKKQ 474



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPK---EPSEVPTPK---RPRGRPKGSKNKGAAK 60
           + ++    K    G + RGR +PR+Q P      S V   K   R +    G+ + G   
Sbjct: 504 QKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGG 563

Query: 61  TRKTTTTPGRKPR 73
            +++    G KPR
Sbjct: 564 NKQSRGGGGNKPR 576


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKT 61
           SE   +  +    K+E++   KR RG+  K+  K        KR RG+ +  K K   K 
Sbjct: 34  SERKKERREREKRKREREKERKRERGKKEKKKRK--------KRERGKERERKRKEREKQ 85

Query: 62  RKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
           RK      R+ R + KK  + ++ G  +   ++E+
Sbjct: 86  RKERREKERRKRKKEKKKRERKQRGRRERKKKKER 120



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 15  KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG 74
           K+EK   +KR RG+ R++  KE  +    +R + R K  K K   K R+      RK RG
Sbjct: 60  KKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEK---KKRE------RKQRG 110

Query: 75  RPKKLEKEEEEGISQESSEEEQ 96
           R ++ +K+E +   +E+ +  +
Sbjct: 111 RRERKKKKERKERERENKQRRE 132



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 22/82 (26%), Positives = 38/82 (46%)

Query: 15  KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG 74
           K+EK   E++ RGR  ++  KE  E     + R   K  K +   + ++      R  R 
Sbjct: 98  KKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRE 157

Query: 75  RPKKLEKEEEEGISQESSEEEQ 96
           R +K  K+EE    +E + +E+
Sbjct: 158 RKRKKRKKEEREKKRERNRKER 179



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 14  SKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRG-RPKGSKNKGAAKTRKTTTTPGRKP 72
           +KQ ++   K+ R + R++  K   E    +R R  R K  + K   + RK       + 
Sbjct: 127 NKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEEREKKRERNRKERKKERERK 186

Query: 73  RGRPKKLEKEEEEGISQESSEEEQ 96
             R +K E+++E    +E  ++ +
Sbjct: 187 ERRERKKERKKERRKKKERKKDRK 210



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAA------K 60
           K  +    ++EK   E+R + R +++  K+  E    ++ RGR +  K K         K
Sbjct: 73  KERERKRKEREKQRKERREKERRKRKKEKKKRE----RKQRGRRERKKKKERKERERENK 128

Query: 61  TRKTTTTPGRKPRGRPKKLEKEEEEG 86
            R+      R+ + R K+ ++E+E G
Sbjct: 129 QRRERKRKKRRKKKRRKERKREKERG 154


>gi|125656165 THO complex 2 [Homo sapiens]
          Length = 1593

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 3    ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
            +  + ++ P A    KDG EK    RP K      ++  TPK  + + K  K + A   +
Sbjct: 1282 KEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKERTPKSDKEKEKFKKEEKAKDEK 1341

Query: 63   KTTTTPGRKPRG---RPKKLEKEEEEGISQESSEEE 95
              TT P  + +    R ++ E   E  I++E   +E
Sbjct: 1342 FKTTVPNAESKSTQEREREKEPSRERDIAKEMKSKE 1377



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 6    SKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTT 65
            S SS   ASK ++  TE+  + R R Q   +     +   P+G    S N  +       
Sbjct: 1209 SSSSIGSASKSDESSTEETDKSRERSQCGVKAVNKASSTTPKG---NSSNGNSGSNSNKA 1265

Query: 66   TTPGRKPRGRPKKLEKEEE 84
                 K +G+ K+ EK+E+
Sbjct: 1266 VKENDKEKGKEKEKEKKEK 1284



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 4    SSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRK 63
            S S S++ +    ++ G EK  + +  K P   P      K  + +PK  +     K R+
Sbjct: 1258 SGSNSNKAVKENDKEKGKEKE-KEKKEKTPATTPEARVLGKDGKEKPKEERPNKDEKARE 1316

Query: 64   TTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
            T        + R  K +KE+E+   +E +++E+
Sbjct: 1317 T--------KERTPKSDKEKEKFKKEEKAKDEK 1341



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 15   KQEKDGT---EKRGRGRPRKQP-PKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR 70
            ++E++GT    K     P + P P E  +     +  G+ KGS +  + K  K ++   +
Sbjct: 1500 RKEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGKEKGSDSFKSEKMDKISSGGKK 1559

Query: 71   KPRGRPKKLEKEEEEGISQESSEEE 95
            + R   +K+EK+E+   S    E++
Sbjct: 1560 ESRHDKEKIEKKEKRDSSGGKEEKK 1584


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPR------GRPKGSKN 55
           SE   +  +    K+E++   KR RG+  K+  ++  E    KR R      G  K  + 
Sbjct: 57  SERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRK 116

Query: 56  KGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
           K   K R  T+  G++   R +K E++ EE   +E  +EE+
Sbjct: 117 KKEKKERGRTSKEGKE---RERKEERKREERKERERKKEER 154



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/94 (21%), Positives = 38/94 (40%)

Query: 3   ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
           E   K  +    K+E+  T K G+ R RK+  K        ++   R K  + K   K  
Sbjct: 108 EGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKERKKRE 167

Query: 63  KTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
           +       + R   ++ E+++ E   +E  +E +
Sbjct: 168 RKQVGEKEEERKEKERKERKKRERNRKERKKERE 201



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 15  KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGR-PKGSKNKGAAKTRKTTTTPGRKPR 73
           K+E+   +KR R +  K+  ++       K+ RGR  K  K +   + RK      RK R
Sbjct: 91  KKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREE---RKER 147

Query: 74  GRPKKLEKEEEEGISQESSEEEQ 96
            R K+  ++E E   ++  E +Q
Sbjct: 148 ERKKEEREKERERKERKKRERKQ 170



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTT 66
           K ++    K+++   EK+ RGR  K+  KE       KR   + +  K +   K R+   
Sbjct: 104 KENKEGEEKEKRKKKEKKERGRTSKE-GKERERKEERKREERKERERKKEEREKERERKE 162

Query: 67  TPGRKPRGRPKKLEKEEE 84
              RK R R +  EKEEE
Sbjct: 163 ---RKKRERKQVGEKEEE 177



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTT 66
           K  +    ++EK+   K  + R RKQ   E  E    K  + R K  +N+   K  +   
Sbjct: 145 KERERKKEEREKERERKERKKRERKQ-VGEKEEERKEKERKERKKRERNRKERKKERERK 203

Query: 67  TPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
               + + R KK E+++E    ++++  E+
Sbjct: 204 ERRERKKERKKKEERKKERQKDRQTNWREK 233



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 15  KQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG 74
           ++EK+  E++ R R RK+  KE       +R + R K  + K   + +   T    K RG
Sbjct: 178 RKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERK-KERQKDRQTNWREKERG 236

Query: 75  RPKKLEKEE 83
           + ++ E+++
Sbjct: 237 KRERKERKK 245


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
           sapiens]
          Length = 2997

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 12  LASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPR--------GRPKGSKNKGAA-KTR 62
           L   QE+   +KR + +   + PKEP E   PK P+          PK  K K A  K +
Sbjct: 634 LDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPK 693

Query: 63  KTTTTPGRKPRGRPKKLEKEEEEGISQESSEEE 95
            +  +  +KP      L+K+  +G ++ S   +
Sbjct: 694 SSKKSSNKKPDSEASALKKKVNKGKTEGSENSD 726


>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
          sapiens]
          Length = 123

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 6  SKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTT 65
          ++ ++    ++EK+G  K  R   RK+  K+     T KR     +  K K         
Sbjct: 13 TEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRK--------- 63

Query: 66 TTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
              RK + + ++ E+EEEE   +E  EEE+
Sbjct: 64 ----RKRKKKKEEEEREEEEEEEEEEKEEEE 90



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 22 EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRG-----RP 76
          +K+ +     +  +E  E    +  R   +  K K   K +KT  T  RK +      R 
Sbjct: 4  KKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRK 63

Query: 77 KKLEKEEEEGISQESSEEEQ 96
          +K +K++EE   +E  EEE+
Sbjct: 64 RKRKKKKEEEEREEEEEEEE 83



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 3   ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
           +   K ++    ++EK+  EK+ + + +K+  +E  E    +    + +  K +      
Sbjct: 40  KEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEE------ 93

Query: 63  KTTTTPGRKPRGRPKKLEKEEEE 85
                 GR+ + + K+  KEEEE
Sbjct: 94  ------GRRRKKKKKRRRKEEEE 110



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 28 RPRKQPPKEPSEVP-TPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEE 85
          + +K+  KE  E   T +      K  K K   K ++      +K +   K+ EKEEEE
Sbjct: 1  KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEKRKEKEEEE 59


>gi|157266334 tubby like protein 1 [Homo sapiens]
          Length = 542

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGR----PKGSKNKGAAKTR 62
           +S  P  SK  K G  + GR  PR++P  +P++   P+    R    P+  K     +  
Sbjct: 50  ESPCPTGSKPRKPGAGRTGR--PREEPSPDPAQARAPQTVYARFLRDPEAKK-----RDP 102

Query: 63  KTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
           + T    R P    ++ E+EE+E   +E +EE++
Sbjct: 103 RETFLVARAPDAEDEEEEEEEDEEDEEEEAEEKK 136



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 1   MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKR---------PRGRPK 51
           + E  +K+  P       D   K  R R ++ P  E +++   K+         P G P 
Sbjct: 155 LKERRAKAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGEADKDPSGSPA 214

Query: 52  GSKNKGAAKTRKTTTTPGRKP---RGRPKKLEKEEEE 85
            ++   AA       +P +K    +G PK   KEEEE
Sbjct: 215 SARKSPAAMFLVGEGSPDKKALKKKGTPKGARKEEEE 251



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 10  QPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGR--PKGSKNKGAAKTRKTTTT 67
           +PL  K   D  E+R + +  +     P   P P R R +  P G   K     +K +  
Sbjct: 145 KPLREKSSADLKERRAKAQGPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGE 204

Query: 68  PGRKPRGRPKKLEK 81
             + P G P    K
Sbjct: 205 ADKDPSGSPASARK 218



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 22/84 (26%)

Query: 21  TEKRGRGRPRKQPPKEPSEV--------------PTPK--RPRGRPKGSKNKG-----AA 59
           T+K+G G   K P   P+                P  K  + +G PKG++ +      AA
Sbjct: 197 TKKKGSGEADKDPSGSPASARKSPAAMFLVGEGSPDKKALKKKGTPKGARKEEEEEEEAA 256

Query: 60  KTRKTTTTPGRKPRGRPKKLEKEE 83
              K +   G K +G+ KK  KEE
Sbjct: 257 TVIKKSNQKG-KAKGKGKKKAKEE 279


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 4    SSSKSSQPLASKQEKDGTEKRGRGRP---RKQPPKEPSEVPTPK-RPRGRPKGSKNKGAA 59
            +S+K  + +ASK     ++ R  G+    R +PP  PS  P P   P G  + S  + A 
Sbjct: 1257 TSAKGPETMASKFPSSSSDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAG 1316

Query: 60   KT--RKTTTTPGRKPRGRPKKLEK 81
             T  RK     G+K + RP  L+K
Sbjct: 1317 DTPERKEAAGTGKKVKVRPPPLKK 1340


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTT 66
           KS  P +   +  G   +G G+P+  PP+  ++   P  P G+P+G   +G +K++   +
Sbjct: 86  KSRSPRSPPGKPQGPPPQG-GKPQGPPPQGGNKPQGPPPP-GKPQGPPAQGGSKSQSARS 143

Query: 67  TPGRKPRGRPKK 78
            PG KP+G P++
Sbjct: 144 PPG-KPQGPPQQ 154



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 1   MSESSSKSSQPLASKQEKDGTEKRGRGRPR---------KQPPKEPSEVPTPKRPRGRPK 51
           ++E  S+   P        G   +G  +P+         + PP +    P    P G+P+
Sbjct: 19  LNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 78

Query: 52  GSKNKGAAKTRKTTTTPGRKPRGRP 76
           G   +G  K+R   + PG KP+G P
Sbjct: 79  GPPPQG-DKSRSPRSPPG-KPQGPP 101



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 3   ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVP--------TPKRPRGRPKGSK 54
           +  +K   P     +  G   +G  +P+  PP    + P        +P+ P G+P+G  
Sbjct: 42  QGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP 101

Query: 55  NKGAAKTRKTTTTPGRKPRGRP 76
            +G  K +      G KP+G P
Sbjct: 102 PQG-GKPQGPPPQGGNKPQGPP 122


>gi|48255931 hepatoma-derived growth factor-related protein 2
           isoform 1 [Homo sapiens]
          Length = 671

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGR-GRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
           +E  S  S     +++ +  +KRGR GR R  P    SE      P    +    K A K
Sbjct: 362 AERGSGGSSGDELREDDEPVKKRGRKGRGRGPPSSSDSE------PEAELEREAKKSAKK 415

Query: 61  TRKTTTTPGRKPRGRPKKLEKEEEE 85
            + ++T P RKP  + K++  EE++
Sbjct: 416 PQSSSTEPARKPGQKEKRVRPEEKQ 440



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 1   MSESSSKSSQPLASKQEKDGTEKRGRGR-PRKQP-PKEPSEVPTPKRPRGRPKGSKNKGA 58
           M+ S+S SS   +S       +K  RGR P ++P PK     P P+RP   P  S +   
Sbjct: 250 MARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERP---PSSSSSDSD 306

Query: 59  AKTRKTTTTPGRKPRGRPKKLE----KEEEEGI----SQESSEEEQ 96
           +      +   R+   R ++LE    +E+EE +     QE  E+E+
Sbjct: 307 SDEVDRISEWKRRDEARRRELEARRRREQEEELRRLREQEKEEKER 352



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/90 (18%), Positives = 31/90 (34%)

Query: 3   ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
           ++SS   Q   S  E++ +E              P +    + PR  P G + K  A + 
Sbjct: 172 KASSDLDQASVSPSEEENSESSSESEKTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSA 231

Query: 63  KTTTTPGRKPRGRPKKLEKEEEEGISQESS 92
             + +       +P+ +        S  SS
Sbjct: 232 SDSDSKADSDGAKPEPVAMARSASSSSSSS 261


>gi|14249158 hepatoma-derived growth factor-related protein 2
           isoform 2 [Homo sapiens]
          Length = 670

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGR-GRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
           +E  S  S     +++ +  +KRGR GR R  P    SE      P    +    K A K
Sbjct: 362 AERGSGGSSGDELREDDEPVKKRGRKGRGRGPPSSSDSE------PEAELEREAKKSAKK 415

Query: 61  TRKTTTTPGRKPRGRPKKLEKEEEE 85
            + ++T P RKP  + K++  EE++
Sbjct: 416 PQSSSTEPARKPGQKEKRVRPEEKQ 440



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 1   MSESSSKSSQPLASKQEKDGTEKRGRGR-PRKQP-PKEPSEVPTPKRPRGRPKGSKNKGA 58
           M+ S+S SS   +S       +K  RGR P ++P PK     P P+RP   P  S +   
Sbjct: 250 MARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERP---PSSSSSDSD 306

Query: 59  AKTRKTTTTPGRKPRGRPKKLE----KEEEEGI----SQESSEEEQ 96
           +      +   R+   R ++LE    +E+EE +     QE  E+E+
Sbjct: 307 SDEVDRISEWKRRDEARRRELEARRRREQEEELRRLREQEKEEKER 352



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/90 (18%), Positives = 31/90 (34%)

Query: 3   ESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTR 62
           ++SS   Q   S  E++ +E              P +    + PR  P G + K  A + 
Sbjct: 172 KASSDLDQASVSPSEEENSESSSESEKTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSA 231

Query: 63  KTTTTPGRKPRGRPKKLEKEEEEGISQESS 92
             + +       +P+ +        S  SS
Sbjct: 232 SDSDSKADSDGAKPEPVAMARSASSSSSSS 261


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSK---NKGA 58
           S S SK      S+      +KR +GR R +           K  R R +GSK     G+
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKR-KGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGS 390

Query: 59  AKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEE 94
           +K +K   T   + R   + + KE E   S+ S  E
Sbjct: 391 SKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQRE 426



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKG---SKNKGA 58
           S S SK  +  +  +EK  +     G+ R +   +  E        G+PK    S++K  
Sbjct: 238 SRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK 297

Query: 59  AKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEE 95
           +K+R          R + +++E+E+   +S+  S+E+
Sbjct: 298 SKSRS---------RSQERRVEEEKRGSVSRGRSQEK 325


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 4   SSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRK 63
           S  K+  P A++ + +G +K+ + + +K+  KE  E    K P      +  +  AK ++
Sbjct: 295 SEEKAETPTAAEDDNEGDKKK-KDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKE 353

Query: 64  TTTTPGRKPRGRPKKLE-----KEEEEGISQESSEEEQ 96
                 R+   R K+LE     ++EEE + QE  E ++
Sbjct: 354 EEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKK 391



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 7   KSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGA------AK 60
           K  Q L SK+  +  E        +Q   E  E P P  P    + +++ G       A 
Sbjct: 453 KIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPPPVEPE-EEEDTEDAGLDDWEAMAS 511

Query: 61  TRKTTTTPGRKP----RGRPKKLEKEEEEGISQESSEEEQ 96
             +T    G K     +  P++ E+EEEE    E SEEE+
Sbjct: 512 DEETEKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEE 551


>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
          Length = 477

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 13  ASKQEK--DGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGR 70
           A KQ K  D  E+R  G P + P   PS VP P  P G P     + AA         GR
Sbjct: 251 AQKQVKKIDSCERRFLGGPARPPSPSPSPVPAPAPPPGPP-----RPAAAAATAPLANGR 305

Query: 71  KPRGRPKKLEKEEEE 85
             + RP +L    E+
Sbjct: 306 AGKRRPSRLVALREQ 320


>gi|188497689 chromatin licensing and DNA replication factor 1
          [Homo sapiens]
          Length = 546

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 12 LASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRK 71
          +  ++  D   +R  G PR  PPK     P+P RP  R   S   G+ K  +    PGR 
Sbjct: 1  MEQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRD 60

Query: 72 PRGRPKK 78
              P +
Sbjct: 61 QARPPAR 67


>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 248

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 17 EKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRP 76
          EK+   K  RGR +K   K+  +  T K+   +   +K K   KT+K TTT  +      
Sbjct: 18 EKESAWK--RGRKKKTTKKKKKKKTTMKKK--KKTTTKKKTTTKTKKRTTTTKKTTTTTT 73

Query: 77 KKLEKEEEEGISQESSEEEQ 96
          K+ EKE+E+   +E  +E++
Sbjct: 74 KEKEKEKEKEKEKEKEKEKE 93



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 21 TEKRG---RGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPK 77
          TEK     RGR +K   K+  +  T K+ +      K     K R TTT        + K
Sbjct: 17 TEKESAWKRGRKKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEK 76

Query: 78 KLEKEEEEGISQESSEEEQ 96
          + EKE+E+   +E  +E++
Sbjct: 77 EKEKEKEKEKEKEKEKEKE 95


>gi|4885375 histone cluster 1, H1c [Homo sapiens]
          Length = 213

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 2   SESSSKSSQPLASKQEKDGTEKRGRGRPRK-----QPPKEPSEVPTPKRPRGR-PKGSKN 55
           +  S K ++  AS + K   +K G  +P+K     + PK+ +   TPK+   + PK +K 
Sbjct: 101 ASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKK 160

Query: 56  KGAAK-TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSE 93
             AA  T+K   +P +    +PKK  K   + +  ++++
Sbjct: 161 PAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKAAK 199


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.295    0.118    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,147,386
Number of Sequences: 37866
Number of extensions: 329937
Number of successful extensions: 4054
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 489
Number of HSP's that attempted gapping in prelim test: 2411
Number of HSP's gapped (non-prelim): 1853
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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