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Search of human proteins with 22027511
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22027511 cell division cycle associated 4 [Homo sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22027509 cell division cycle associated 4 [Homo sapiens] 493 e-140
gi|22027511 cell division cycle associated 4 [Homo sapiens] 493 e-140
gi|7661926 SERTA domain containing 2 [Homo sapiens] 62 6e-10
gi|153792060 SERTA domain containing 1 [Homo sapiens] 53 3e-07
gi|42741652 RPA-binding trans-activator [Homo sapiens] 33 0.22
gi|15718684 RPA-binding trans-activator [Homo sapiens] 33 0.22
gi|40254931 hypothetical protein LOC55732 [Homo sapiens] 33 0.29
gi|10092667 SERTA domain containing 4 [Homo sapiens] 32 0.38
gi|239755452 PREDICTED: hypothetical protein [Homo sapiens] 31 0.84
gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo ... 31 0.84
gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo ... 31 0.84
gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1 p... 31 0.84
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 31 1.1
gi|193788649 retinoic acid induced 2 [Homo sapiens] 31 1.1
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 30 2.5
gi|154354992 B-box and SPRY domain containing [Homo sapiens] 28 7.1
gi|54873613 agrin [Homo sapiens] 28 9.3
gi|4557743 Mediterranean fever protein [Homo sapiens] 28 9.3
gi|58761492 Rho guanine nucleotide exchange factor (GEF) 10-like... 28 9.3
gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like... 28 9.3
gi|153945771 endothelin converting enzyme 2 isoform D [Homo sapi... 28 9.3
gi|10863935 reticulon 1 isoform A [Homo sapiens] 28 9.3
gi|23397708 copine I isoform a [Homo sapiens] 28 9.3
gi|23397706 copine I isoform a [Homo sapiens] 28 9.3
gi|23397704 copine I isoform a [Homo sapiens] 28 9.3
gi|23397702 copine I isoform a [Homo sapiens] 28 9.3
gi|23397700 copine I isoform a [Homo sapiens] 28 9.3
gi|23397698 copine I isoform a [Homo sapiens] 28 9.3
gi|23397696 copine I isoform a [Homo sapiens] 28 9.3
gi|197333761 copine I isoform b [Homo sapiens] 28 9.3
>gi|22027509 cell division cycle associated 4 [Homo sapiens]
Length = 241
Score = 493 bits (1270), Expect = e-140
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV 60
MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
Sbjct: 1 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV 60
Query: 61 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG 120
LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
Sbjct: 61 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG 120
Query: 121 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL 180
HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
Sbjct: 121 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL 180
Query: 181 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE 240
FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
Sbjct: 181 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE 240
Query: 241 T 241
T
Sbjct: 241 T 241
>gi|22027511 cell division cycle associated 4 [Homo sapiens]
Length = 241
Score = 493 bits (1270), Expect = e-140
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV 60
MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
Sbjct: 1 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV 60
Query: 61 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG 120
LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
Sbjct: 61 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG 120
Query: 121 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL 180
HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
Sbjct: 121 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL 180
Query: 181 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE 240
FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
Sbjct: 181 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE 240
Query: 241 T 241
T
Sbjct: 241 T 241
>gi|7661926 SERTA domain containing 2 [Homo sapiens]
Length = 314
Score = 61.6 bits (148), Expect = 6e-10
Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 1 MFARGLKRKCVGHEEDVEGALAGL---KTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLC 57
M +G KRK HE+ +EG + + SY+LQRQ++ ++SL+KL L EP+L
Sbjct: 1 MLGKGGKRKFDEHEDGLEGKIVSPCDGPSKVSYTLQRQTIFNISLMKLYNHRPLTEPSLQ 60
Query: 58 RSVLIANTVRQIQEEMTQDGTWR 80
++VLI N +R+IQEE+ Q+G+ R
Sbjct: 61 KTVLINNMLRRIQEELKQEGSLR 83
Score = 48.5 bits (114), Expect = 5e-06
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 126 VSDLCPV-TSAQAPRHLQSSA---------WEMDGPRENRGSFHKSLDQIFETLETKNPS 175
+ +LCP TS +A S ++DGP+E+R K +D + E +
Sbjct: 176 IEELCPTSTSTEAATAATDSVKGTSSEAGTQKLDGPQESRADDSKLMDSLPGNFEITTST 235
Query: 176 CM-------EELFSDVDSPYYDLDTVLTGMMGGARPGPCEG---LEGLAPATPGP---SS 222
+ LF+D+D+ YD D + ++ P L+ LAP + P S
Sbjct: 236 GFLTDLTLDDILFADIDTSMYDFDPCTSSSGTASKMAPVSADDLLKTLAPYSSQPVTPSQ 295
Query: 223 SCKSDLGELDHVVEILV 239
K DL ELDH++E+LV
Sbjct: 296 PFKMDLTELDHIMEVLV 312
>gi|153792060 SERTA domain containing 1 [Homo sapiens]
Length = 236
Score = 52.8 bits (125), Expect = 3e-07
Identities = 71/258 (27%), Positives = 109/258 (42%), Gaps = 50/258 (19%)
Query: 1 MFARGLKRKCVGHEEDVEGAL------AGLKTVSSY--SLQRQSLLDMSLVKLQLCHMLV 52
M ++GLKRK EE A+ G V+ ++ SL D+S++KL
Sbjct: 1 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS 60
Query: 53 EPNLCRSVLIANTVRQIQEEMTQDGTWRTV-APQAAERAPLDRLVSTEILCRAAWGQEGA 111
EP+L VL+ NT+R+IQ M V +P AA + L S++ A+
Sbjct: 61 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASM----- 115
Query: 112 HPAPGLGD-GHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLE 170
A L D H +G +QAP+ L P + G SL L+
Sbjct: 116 --ASLLEDLSHIEG---------LSQAPQPLADEG----PPGRSIGGAAPSLG----ALD 156
Query: 171 TKNPSC-------MEELFSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSS 223
P+ +E LF D+D+ YD + + G +PGP +G PG +
Sbjct: 157 LLGPATGCLLDDGLEGLFEDIDTSMYD-NELWAPASEGLKPGPEDG--------PGKEEA 207
Query: 224 CKSDLGELDHVVEILVET 241
+ D ELD+++++LV T
Sbjct: 208 PELDEAELDYLMDVLVGT 225
>gi|42741652 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 5 GLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSVLIAN 64
GLKRK EE+ E + SY +Q+LL +SL K+Q P+L R VLI N
Sbjct: 4 GLKRKHSDLEEEEERWEWSPAGLQSY---QQALLRISLDKVQRSLGPRAPSLRRHVLIHN 60
Query: 65 TVRQIQ 70
T++Q+Q
Sbjct: 61 TLQQLQ 66
>gi|15718684 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 33.1 bits (74), Expect = 0.22
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 5 GLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSVLIAN 64
GLKRK EE+ E + SY +Q+LL +SL K+Q P+L R VLI N
Sbjct: 4 GLKRKHSDLEEEEERWEWSPAGLQSY---QQALLRISLDKVQRSLGPRAPSLRRHVLIHN 60
Query: 65 TVRQIQ 70
T++Q+Q
Sbjct: 61 TLQQLQ 66
>gi|40254931 hypothetical protein LOC55732 [Homo sapiens]
Length = 853
Score = 32.7 bits (73), Expect = 0.29
Identities = 42/159 (26%), Positives = 64/159 (40%), Gaps = 16/159 (10%)
Query: 34 RQSLLDMSLVKLQLCHMLVEPNLCRSVLIA-NTVRQIQEEMTQDGTWRTVAPQAAERAPL 92
+QSL S++K QL H + +LC +L + ++ Q+ E+MTQ A + A
Sbjct: 188 KQSLKHQSIIKSQLKHKDIITSLCEDILFSFHSCLQLAEQMTQS--------DAQDNADY 239
Query: 93 DRLVSTEILCRAAWGQEGAHPA----PGLGDGHTQGPVSDLCPVTSAQAPRHLQSSAWEM 148
T LCR + H A P L D + L ++ P L ++
Sbjct: 240 RLFQKTLKLCR-FFANSLLHYAKEFLPFLSDSCC--TLHQLYLQIHSKFPPSLYATRISK 296
Query: 149 DGPRENRGSFHKSLDQIFETLETKNPSCMEELFSDVDSP 187
E G+F +LD + L T P L S +D P
Sbjct: 297 AHQEEIAGAFLVTLDPLISQLLTFQPFMQVVLDSKLDLP 335
>gi|10092667 SERTA domain containing 4 [Homo sapiens]
Length = 356
Score = 32.3 bits (72), Expect = 0.38
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 7 KRKCVGHEEDVEGALAGL--KTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSVLIAN 64
KRK V EED L+ KT+S + +R +L MSL KL+ E L RSVLI N
Sbjct: 78 KRKYV-EEEDFHPPLSSCSHKTISIFE-ERAHILYMSLEKLKFIDD-PEVYLRRSVLINN 134
Query: 65 TVRQIQEEMTQDGTW 79
+++I E+ W
Sbjct: 135 LMKRIHGEIIMQNNW 149
>gi|239755452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 31.2 bits (69), Expect = 0.84
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 82 VAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHL 141
VAP A AP+ TE + +WG GLG G Q + Q P H+
Sbjct: 21 VAPVAFLTAPIGEAPRTEAMADVSWGL-------GLGQGTEQVVEGATQGLAQLQGPHHV 73
Query: 142 QSSAWEMDGP 151
Q++ + GP
Sbjct: 74 QATFYPELGP 83
>gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo
sapiens]
Length = 171
Score = 31.2 bits (69), Expect = 0.84
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 82 VAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHL 141
VAP A AP+ TE + +WG GLG G Q + Q P H+
Sbjct: 21 VAPVAFLTAPIGEAPRTEAMADVSWGL-------GLGQGTEQVVEGATQGLAQLQGPHHV 73
Query: 142 QSSAWEMDGP 151
Q++ + GP
Sbjct: 74 QATFYPELGP 83
>gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo
sapiens]
Length = 171
Score = 31.2 bits (69), Expect = 0.84
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 82 VAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHL 141
VAP A AP+ TE + +WG GLG G Q + Q P H+
Sbjct: 21 VAPVAFLTAPIGEAPRTEAMADVSWGL-------GLGQGTEQVVEGATQGLAQLQGPHHV 73
Query: 142 QSSAWEMDGP 151
Q++ + GP
Sbjct: 74 QATFYPELGP 83
>gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1
precursor [Homo sapiens]
Length = 2315
Score = 31.2 bits (69), Expect = 0.84
Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 19/124 (15%)
Query: 114 APGLGDGHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKN 173
A GL H G + SA P +S AW + E GS + D + E ET
Sbjct: 1508 ANGLSQKHNDGKEENDIQTGSALLPLSPESKAWAVLTSDEESGSGQGTSDSLNEN-ETST 1566
Query: 174 PSCMEELFSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATP-GPSSSCKSDLGELD 232
FS D+ D D +L G + P P P+SS S+ E+
Sbjct: 1567 D------FSFADTNEKDADGILAA-----------GDSEITPGFPQSPTSSVTSENSEVF 1609
Query: 233 HVVE 236
HV E
Sbjct: 1610 HVSE 1613
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 198 MMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVE 236
++GGARPGP + G + A G SS +S +G D V+
Sbjct: 1710 VLGGARPGPADQSSGGSWAGTGNQSSGRSWIGPGDQAVD 1748
>gi|193788649 retinoic acid induced 2 [Homo sapiens]
Length = 530
Score = 30.8 bits (68), Expect = 1.1
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 122 TQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEELF 181
TQGPV L V +HL S + + H +L Q E E + +
Sbjct: 116 TQGPVQ-LPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIP 174
Query: 182 SDVDSPYYDLDTVLTGMM---GGARPGPCEGLEGLAPATPGPSSSCKSDL 228
S P + VL + G P PC+ G AP P P SS S L
Sbjct: 175 SQPQEPTLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPL 224
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 110 GAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHLQSSAW-EMDGPRENRGSFHKSLDQIFET 168
G+ + G G G G P+ S +W E PR++ SF +S + +
Sbjct: 154 GSRWSRGRGVGERGGKPGCRPPLGGGAGSGFSSSQSWREPSPPRKSSKSFGRSPSRK-QN 212
Query: 169 LETKNPSCMEELFSDVDSPYYDLDTVL 195
+KN +C+EE F D+ Y + L
Sbjct: 213 YSSKNENCVEETFEDLLLKYKQIQLEL 239
>gi|154354992 B-box and SPRY domain containing [Homo sapiens]
Length = 402
Score = 28.1 bits (61), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 109 EGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHLQSSAW 146
EGA P PG G G GP LC P H Q+ +W
Sbjct: 4 EGAEPGPGSGSGPGPGP---LC-------PEHGQALSW 31
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 27.7 bits (60), Expect = 9.3
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 20/124 (16%)
Query: 100 ILCRAAWGQEGAHPAPGLGDGHTQG-PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSF 158
+L +A GA P H+Q P P T+A PR ++ W +
Sbjct: 992 LLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRTTASVPR---TTVWPVL--------- 1039
Query: 159 HKSLDQIFETLETKNPSCMEELFSDVDSPYYDLDTVLTGMM--GGARPGPCEGLEGLAPA 216
+ T + PS + F + S D L+G G G E LEG + A
Sbjct: 1040 -----TVPPTAPSPAPSLVASAFGESGSTDGSSDEELSGDQEASGGGSGGLEPLEGSSVA 1094
Query: 217 TPGP 220
TPGP
Sbjct: 1095 TPGP 1098
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 27.7 bits (60), Expect = 9.3
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 89 RAPLDRLVSTEILCRAAWGQEGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHLQSSAWEM 148
RA RL++ E L RAA QE + G D + + P S + P H + + E
Sbjct: 75 RAINQRLLAEE-LHRAAI-QEYSTQENGTDDSAASSSLGENKP-RSLKTPDHPEGN--EG 129
Query: 149 DGPRENRG---SFHKSLDQIFETLETKNPSCMEELFSDVDSPYYDLDTVLTGMMGGARPG 205
+GPR G S S + L K S E S+ T + GG PG
Sbjct: 130 NGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRREKASEGLDAQGKPRTRSPALPGGRSPG 189
Query: 206 PCEGLEG 212
PC LEG
Sbjct: 190 PCRALEG 196
>gi|58761492 Rho guanine nucleotide exchange factor (GEF) 10-like
isoform 1 [Homo sapiens]
Length = 1279
Score = 27.7 bits (60), Expect = 9.3
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 119 DGHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPR 152
+GH GPV+ L TS AP L+S E +GPR
Sbjct: 1110 NGHC-GPVAFLAVATSILAPDILRSDQEEAEGPR 1142
>gi|74136547 Rho guanine nucleotide exchange factor (GEF) 10-like
isoform 2 [Homo sapiens]
Length = 1240
Score = 27.7 bits (60), Expect = 9.3
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 119 DGHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPR 152
+GH GPV+ L TS AP L+S E +GPR
Sbjct: 1071 NGHC-GPVAFLAVATSILAPDILRSDQEEAEGPR 1103
>gi|153945771 endothelin converting enzyme 2 isoform D [Homo
sapiens]
Length = 811
Score = 27.7 bits (60), Expect = 9.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 190 DLDTVLTGMMGGARPGPCEGLEGLAPATPGPS 221
D D T + GGA P E +G +P +PGPS
Sbjct: 24 DEDAPETPVEGGASPDAMEVGKGASPFSPGPS 55
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 27.7 bits (60), Expect = 9.3
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 109 EGAHPAPGLGDGHTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFET 168
+ P+PGLG + + + Q+P +++++ + G ++D F T
Sbjct: 43 QAGEPSPGLGARAREAASREAGSGPARQSPVAMETASTGVAG-------VSSAMDHTFST 95
Query: 169 LETKNP-SCMEELFSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPS 221
SC L SD+ P + T TG++ TPGPS
Sbjct: 96 TSKDGEGSCYTSLISDICYPPQEDSTYFTGILQKENGHVTISESPEELGTPGPS 149
>gi|23397708 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|23397706 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|23397704 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|23397702 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|23397700 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|23397698 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|23397696 copine I isoform a [Homo sapiens]
Length = 537
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 195 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 253
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 254 SYKNSGTIRVKICRVETEYSFLDYVMGG 281
>gi|197333761 copine I isoform b [Homo sapiens]
Length = 542
Score = 27.7 bits (60), Expect = 9.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 125 PVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQI------FETLET------- 171
PV C + P +Q S ++ DG + G+FH SL Q+ FE +
Sbjct: 200 PVQHFCG-GNPSTPIQVQCSDYDSDGSHDLIGTFHTSLAQLQAVPAEFECIHPEKQQKKK 258
Query: 172 --KNPSCMEELFSDVDSPYYDLDTVLTG 197
KN + V++ Y LD V+ G
Sbjct: 259 SYKNSGTIRVKICRVETEYSFLDYVMGG 286
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,520,679
Number of Sequences: 37866
Number of extensions: 500690
Number of successful extensions: 1760
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1738
Number of HSP's gapped (non-prelim): 43
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.