Guide to the Human Genome
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Name: SERTAD4 Sequence: fasta or formatted (356aa) NCBI GI: 10092667
Description:

SERTA domain containing 4

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         25           2
 C cysteine            3.7         13           2
 D aspartate           4.2         15           2
 E glutamate           7.3         26           3
 F phenylalanine       4.2         15           1
 G glycine             6.7         24           2
 H histidine           2.2          8           1
 I isoleucine          4.8         17           2
 K lysine              6.2         22           2
 L leucine             6.5         23           1
 M methionine          2.0          7           1
 N asparagine          5.9         21           2
 P proline             7.3         26           2
 Q glutamine           3.1         11           1
 R arginine            4.5         16           2
 S serine             12.4         44          10
 T threonine           3.1         11           2
 V valine              3.9         14           1
 W tryptophan          1.1          4           1
 Y tyrosine            3.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SERTA domain containing 4 
HEG1                  0.024   HEG homolog 1 
DACH1                 0.020   dachshund homolog 1 isoform b 
DACH1                 0.020   dachshund homolog 1 isoform a 
DACH1                 0.020   dachshund homolog 1 isoform c 
LOC100130174          0.020   PREDICTED: hypothetical protein 
LOC100130174          0.020   PREDICTED: hypothetical protein 
FOXC1                 0.018   forkhead box C1 
ZBTB4                 0.018   zinc finger and BTB domain containing 4 
ZBTB4                 0.018   zinc finger and BTB domain containing 4 
SETD1A                0.015   SET domain containing 1A 
C4orf8                0.015   hypothetical protein LOC8603 
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
E2F4                  0.014   E2F transcription factor 4 
TEX2                  0.014   testis expressed sequence 2 
SRRM2                 0.014   splicing coactivator subunit SRm300 
KCNMA1                0.013   large conductance calcium-activated potassium chann...
KCNMA1                0.013   large conductance calcium-activated potassium chann...
KCNMA1                0.013   large conductance calcium-activated potassium channe...
KCNMA1                0.013   large conductance calcium-activated potassium channe...
LOC100130174          0.013   PREDICTED: hypothetical protein 
MAGEA10               0.013   melanoma antigen family A, 10 
MAGEA10               0.013   melanoma antigen family A, 10 
KSR2                  0.013   kinase suppressor of ras 2 
SH2B2                 0.011   SH2B adaptor protein 2 
LOC100288635          0.011   PREDICTED: hypothetical protein 
LOC100288635          0.011   PREDICTED: hypothetical protein XP_002343184 
ATXN7L1               0.011   ataxin 7-like 1 isoform 1 
ATXN7L1               0.011   ataxin 7-like 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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