Guide to the Human Genome
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Name: C1orf112 Sequence: fasta or formatted (853aa) NCBI GI: 40254931
Description:

hypothetical protein LOC55732

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         61           2
 C cysteine            2.9         25           2
 D aspartate           3.9         33           2
 E glutamate           6.9         59           3
 F phenylalanine       5.4         46           3
 G glycine             2.6         22           1
 H histidine           3.5         30           2
 I isoleucine          5.3         45           2
 K lysine              5.3         45           1
 L leucine            15.7        134           3
 M methionine          2.5         21           2
 N asparagine          2.5         21           1
 P proline             4.0         34           2
 Q glutamine           6.9         59           2
 R arginine            2.6         22           1
 S serine              8.1         69           2
 T threonine           6.0         51           3
 V valine              5.9         50           3
 W tryptophan          1.2         10           1
 Y tyrosine            1.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55732 
KIF11                 0.007   kinesin family member 11 
NEB                   0.007   nebulin 
ATM                   0.006   ataxia telangiectasia mutated isoform 2 
ATM                   0.006   ataxia telangiectasia mutated isoform 1 
LOC651610             0.006   PREDICTED: similar to Serine-protein kinase ATM, pa...
F11                   0.006   coagulation factor XI precursor 
TRIP11                0.006   thyroid hormone receptor interactor 11 
PIK3C2G               0.005   phosphoinositide-3-kinase, class 2 gamma polypeptid...
CDCA4                 0.005   cell division cycle associated 4 
CDCA4                 0.005   cell division cycle associated 4 
NES                   0.004   nestin 
HOOK1                 0.004   hook homolog 1 
IL18                  0.004   interleukin 18 proprotein 
PRAME                 0.003   preferentially expressed antigen in melanoma 
PRAME                 0.003   preferentially expressed antigen in melanoma 
PRAME                 0.003   preferentially expressed antigen in melanoma 
PRAME                 0.003   preferentially expressed antigen in melanoma 
PRAME                 0.003   preferentially expressed antigen in melanoma 
ZC3H8                 0.003   zinc finger CCCH-type containing 8 
MDN1                  0.003   MDN1, midasin homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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