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Search of human proteins with 219881536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
(341 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 699 0.0
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 629 e-180
gi|22749341 hypothetical protein LOC199870 isoform 3 [Homo sapiens] 611 e-175
gi|219881540 hypothetical protein LOC199870 isoform 4 [Homo sapi... 541 e-154
gi|134288896 hypothetical protein LOC143684 [Homo sapiens] 429 e-120
gi|221139693 hypothetical protein LOC199870 isoform 5 [Homo sapi... 402 e-112
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 66 4e-11
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 63 3e-10
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 60 4e-09
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 57 2e-08
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 57 3e-08
gi|40807368 potassium channel regulator isoform 2 [Homo sapiens] 56 4e-08
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 56 5e-08
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 55 1e-07
gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor ... 54 3e-07
gi|61969666 arginine-fifty homeobox [Homo sapiens] 53 3e-07
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 52 6e-07
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 51 2e-06
gi|94680985 cyclin J-like [Homo sapiens] 50 3e-06
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 50 4e-06
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 50 4e-06
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens] 46 5e-05
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 46 5e-05
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 45 7e-05
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 45 7e-05
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 44 2e-04
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 44 2e-04
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 44 2e-04
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 44 2e-04
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 699 bits (1804), Expect = 0.0
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
Query: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ
Sbjct: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
Query: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
Query: 181 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 240
SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA
Sbjct: 181 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 240
Query: 241 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 300
LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ
Sbjct: 241 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 300
Query: 301 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 341
MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP
Sbjct: 301 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 341
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 629 bits (1622), Expect = e-180
Identities = 312/341 (91%), Positives = 312/341 (91%), Gaps = 29/341 (8%)
Query: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
Query: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ
Sbjct: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
Query: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
Query: 181 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 240
SSSSRAGHQEKEQYSRLSGGGHYNS FSPDLA
Sbjct: 181 SSSSRAGHQEKEQYSRLSGGGHYNS-----------------------------FSPDLA 211
Query: 241 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 300
LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ
Sbjct: 212 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 271
Query: 301 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 341
MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP
Sbjct: 272 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 312
>gi|22749341 hypothetical protein LOC199870 isoform 3 [Homo sapiens]
Length = 307
Score = 611 bits (1575), Expect = e-175
Identities = 306/341 (89%), Positives = 306/341 (89%), Gaps = 34/341 (9%)
Query: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQE
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQES----------- 49
Query: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ
Sbjct: 50 -----------------------KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 86
Query: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 87 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 146
Query: 181 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 240
SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA
Sbjct: 147 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 206
Query: 241 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 300
LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ
Sbjct: 207 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 266
Query: 301 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 341
MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP
Sbjct: 267 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 307
>gi|219881540 hypothetical protein LOC199870 isoform 4 [Homo
sapiens]
Length = 278
Score = 541 bits (1393), Expect = e-154
Identities = 277/341 (81%), Positives = 277/341 (81%), Gaps = 63/341 (18%)
Query: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQE
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQES----------- 49
Query: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ
Sbjct: 50 -----------------------KTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 86
Query: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 87 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 146
Query: 181 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 240
SSSSRAGHQEKEQYSRLSGGGHYNS FSPDLA
Sbjct: 147 SSSSRAGHQEKEQYSRLSGGGHYNS-----------------------------FSPDLA 177
Query: 241 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 300
LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ
Sbjct: 178 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 237
Query: 301 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 341
MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP
Sbjct: 238 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 278
>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
Length = 339
Score = 429 bits (1104), Expect = e-120
Identities = 227/370 (61%), Positives = 262/370 (70%), Gaps = 64/370 (17%)
Query: 2 AALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHCN 61
+ALYACTKC QR+PFE LSQGQQLCKECRIAHP+VKCTYCR+E+QQE
Sbjct: 4 SALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQES------------ 51
Query: 62 LHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQR 121
KTNTICKKCAQNV+ +GTPKPCQYCNIIAAFIG KCQR
Sbjct: 52 ----------------------KTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQR 89
Query: 122 CTNSEKKYGPPYSCEQCKQQCAFDRKDD-RKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
CTNSEKKYGPP +CEQCKQQCAFDRK++ R+KVDGKLLCWLCTLSYKRVLQKTKEQRK L
Sbjct: 90 CTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSL 149
Query: 181 ----SSSSRAGHQEKEQYSRLSGGGHYN------------------------SQKTLSTS 212
S+SS + EK+Q+ H++ Q S++
Sbjct: 150 GSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSA 209
Query: 213 SIQNEIPKKKSKFESITTNGDSFSPDLALDSPGTDHFVIIAQLKEEVATLKKMLHQKDQM 272
+IQNE PKKK K ES +NGDS S + + DS GTD+FV+I+QLKEEV +LK++L Q+DQ
Sbjct: 210 TIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQT 269
Query: 273 ILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQAKNRELLKQAAALSKSKKS 332
ILEK+KK+TELKADFQYQES +R KMN MEK HKE EQLQAKNRELLKQ AALSK KK
Sbjct: 270 ILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKF 329
Query: 333 EKSGAI-TSP 341
+KSG+I TSP
Sbjct: 330 DKSGSILTSP 339
>gi|221139693 hypothetical protein LOC199870 isoform 5 [Homo
sapiens]
Length = 227
Score = 402 bits (1032), Expect = e-112
Identities = 226/341 (66%), Positives = 226/341 (66%), Gaps = 114/341 (33%)
Query: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQERLECNGTISAHC 60
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQE
Sbjct: 1 MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQES----------- 49
Query: 61 NLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYCNIIAAFIGNKCQ 120
KTNTICKKCAQNVQLYGT
Sbjct: 50 -----------------------KTNTICKKCAQNVQLYGT------------------- 67
Query: 121 RCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTKEQRKHL 180
VDGKLLCWLCTLSYKRVLQKTKEQRKHL
Sbjct: 68 --------------------------------VDGKLLCWLCTLSYKRVLQKTKEQRKHL 95
Query: 181 SSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLA 240
SSSSRAGHQEKEQYSRLSGGGHYN SFSPDLA
Sbjct: 96 SSSSRAGHQEKEQYSRLSGGGHYN-----------------------------SFSPDLA 126
Query: 241 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 300
LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ
Sbjct: 127 LDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQ 186
Query: 301 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 341
MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP
Sbjct: 187 MEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGAITSP 227
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 66.2 bits (160), Expect = 4e-11
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLYGTPKPCQYC 108
RLEC+G ISAHC+LHLPGSSDSPAS+S++AG T N + +L+ T K CQ C
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASASQIAGTTDAIWNE-----QEKAELF-TDKFCQVC 61
Query: 109 NIIAAF 114
++ F
Sbjct: 62 GVMLQF 67
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 63.2 bits (152), Expect = 3e-10
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83
RLEC+GTIS HCNL LPGSS+SPAS+SRVAGITG+
Sbjct: 799 RLECSGTISPHCNLLLPGSSNSPASASRVAGITGL 833
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 59.7 bits (143), Expect = 4e-09
Identities = 29/47 (61%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 38 CTYCRTEYQQ-ERLECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83
CT RT+ + RLEC+G I AHCNL LPGS DSPAS+S+ AG TG+
Sbjct: 419 CTTARTKSRSVTRLECSGMILAHCNLRLPGSRDSPASASQAAGTTGM 465
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 57.4 bits (137), Expect = 2e-08
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83
+LEC+GTI AH NL L GSSDSPAS+SRVAGITG+
Sbjct: 463 KLECSGTILAHSNLRLLGSSDSPASASRVAGITGV 497
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 56.6 bits (135), Expect = 3e-08
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGIT 81
R EC+G +SAHCNLHLPGSSDS AS RVAGIT
Sbjct: 114 RPECSGAVSAHCNLHLPGSSDSHASVPRVAGIT 146
>gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]
Length = 229
Score = 56.2 bits (134), Expect = 4e-08
Identities = 28/35 (80%), Positives = 30/35 (85%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83
RL CNG ISAH NL L GSSDSPAS+SRVAGITG+
Sbjct: 193 RLVCNGVISAHHNLRLWGSSDSPASASRVAGITGM 227
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 55.8 bits (133), Expect = 5e-08
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 50 LECNGTISAHCNLHLPGSSDSPASSSRVAGITGI 83
+EC+GTI A CNL LPGSSDSPAS+S+VAGIT +
Sbjct: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGITEV 197
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
RLEC+G ISAHCN HL GSS+SPA +SRVAGI
Sbjct: 143 RLECSGKISAHCNPHLQGSSNSPAQASRVAGI 174
>gi|24497440 interleukin 12 receptor, beta 1 isoform 2 precursor
[Homo sapiens]
Length = 381
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/35 (74%), Positives = 29/35 (82%)
Query: 53 NGTISAHCNLHLPGSSDSPASSSRVAGITGIKTNT 87
+G ISAHCNL LP S DSPAS+SRVAGITGI +T
Sbjct: 341 DGMISAHCNLRLPDSRDSPASASRVAGITGICHHT 375
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 53.1 bits (126), Expect = 3e-07
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIK 84
+LEC+GT+SA+C+L+LPGS+D P S+SRVA T I+
Sbjct: 41 KLECSGTVSAYCSLNLPGSTDPPTSASRVAATTAIR 76
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 52.4 bits (124), Expect = 6e-07
Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKTNTICKKCAQNVQLY 99
RLEC G ISAHC L L SSDSP S SRV G TG +C++ Q+Y
Sbjct: 78 RLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTG-------HRCSELAQIY 121
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 50 LECNGTISAHCNLHLPGSSDSPASSSRVAGITG 82
L C+ ISAHCN LPGSSD PAS+S+V GITG
Sbjct: 1106 LGCSSAISAHCNFRLPGSSDFPASASQVDGITG 1138
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 50.1 bits (118), Expect = 3e-06
Identities = 21/26 (80%), Positives = 25/26 (96%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASS 74
RL+C+G ISAHCNLHLPGSS+SPAS+
Sbjct: 102 RLKCSGMISAHCNLHLPGSSNSPASA 127
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 49.7 bits (117), Expect = 4e-06
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGI 80
RLE +GTISA CNL L GSSDSPAS+S+VAG+
Sbjct: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAGL 44
>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
Length = 306
Score = 45.8 bits (107), Expect = 5e-05
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKTNTICKKC-AQNVQLYGTPKPCQY 107
RLE NG SAH N LPGS DSPAS+S+VA I ++ ++ A ++L T +
Sbjct: 15 RLEHNGMTSAHHNFRLPGSRDSPASASQVAEIIDLEWYEKSEETHASQIELLETSSTQEP 74
Query: 108 CNIIAAFIGNKC 119
N AF C
Sbjct: 75 LNASEAFCPRDC 86
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 45.8 bits (107), Expect = 5e-05
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 170 LQKTKEQRKHLSSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESIT 229
L K E K + SS+R Q+K + + SI+ ++ K++ + + +
Sbjct: 770 LSKQLEMEKEIVSSTRLDLQKKSE----------------ALESIKQKLTKQEEEKQILK 813
Query: 230 TNGDSFSPDLALDSPGTDHFVIIAQLKEEVATLKKMLHQKDQMILE------KEKKITEL 283
+ ++ S + + H + +++ V L+K+ +K+ ++ E K K+++
Sbjct: 814 QDFETLSQETKIQ-----HEELNNRIQTTVTELQKVKMEKEALMTELSTVKDKLSKVSDS 868
Query: 284 ----KADFQYQESQMRAKMNQMEKTHKEVTEQLQAKNRELLKQAAALSKSKKSEKSGA 337
K++F+ + + +A + +EKT KE+ QLQ + LK+ L KS + EK +
Sbjct: 869 LKNSKSEFEKENQKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEAS 926
Score = 37.4 bits (85), Expect = 0.019
Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 169 VLQKTKEQRKHLSSSSRAGHQ---EKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKF 225
VLQKT+ + K ++A + EKE+ S L + SQ+T +Q++ ++S+
Sbjct: 986 VLQKTELENKLQQQLTQAAQELAAEKEKISVLQNN-YEKSQETFK--QLQSDFYGRESEL 1042
Query: 226 ESITTNGDSFSPDLALDSPGT--------DHFVIIAQLKEEVATLKKMLHQKDQMILEKE 277
+ + S L+L + +I +LK ATL++ +K+Q + E+
Sbjct: 1043 LATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELKTAKATLEQDSAKKEQQLQERC 1102
Query: 278 KKITELKADFQYQESQM---RAKMNQME----KTHKEVT---EQLQAKNRELLKQAAALS 327
K + +++ + +E ++ ++K+ ++E + KE+T E+L++ E +K+ L
Sbjct: 1103 KALQDIQKEKSLKEKELVNEKSKLAEIEEIKCRQEKEITKLNEELKSHKLESIKEITNLK 1162
Query: 328 KSKK 331
+K+
Sbjct: 1163 DAKQ 1166
Score = 33.9 bits (76), Expect = 0.22
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 169 VLQKTKE-------QRKHLSSSSRAGHQEKEQYSRLSGGGH-YNSQKTLSTSSIQNEIPK 220
+LQK+KE +R+ L + +AG E ++L H Q T T ++N+
Sbjct: 531 LLQKSKENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHTLQEQVTQLTEKLKNQSES 590
Query: 221 KKSKFESITTNGDSFSPDL--------ALDSPGTDHFVIIAQLKEEVATLKKMLHQKDQM 272
K E++ L +L++ + + + KE+V+ L + K ++
Sbjct: 591 HKQAQENLHDQVQEQKAHLRAAQDRVLSLETSVNELNSQLNESKEKVSQLDIQIKAKTEL 650
Query: 273 ILEKEKKITELKADFQ-YQESQMRAKMNQMEKTHKEVT--EQLQAKNRELLKQAAALSKS 329
+L E T +AD Q + ++ A ++ ++ +K T +Q+ AK ++ + + L
Sbjct: 651 LLSAEAAKTAQRADLQNHLDTAQNALQDKQQELNKITTQLDQVTAKLQDKQEHCSQLESH 710
Query: 330 KKSEK 334
K K
Sbjct: 711 LKEYK 715
Score = 33.5 bits (75), Expect = 0.28
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 256 KEEVATLKKMLHQKDQMILEKEKKITEL-----KADFQYQESQM-----RAKMNQMEKTH 305
+++VA L+ L + ++ + EK TEL K Q+QE Q AK+ + +
Sbjct: 452 EQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQNDL 511
Query: 306 KEVTEQLQAKNRELLKQAAALSKSKKS 332
++V Q+ K++++ A L KSK++
Sbjct: 512 EQVLRQIGDKDQKIQNLEALLQKSKEN 538
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 257 EEVATLKKMLHQ----KDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQL 312
E+VA LKK L Q D M LE+E++ +LK + + +SQ + E T ++ +L
Sbjct: 221 EDVAVLKKELVQVQTLMDNMTLERERESEKLKDECKKLQSQYASS----EATISQLRSEL 276
Query: 313 QAKNRELLKQAAALSKSKKS 332
+E+ L K K S
Sbjct: 277 AKGPQEVAVYVQELQKLKSS 296
Score = 30.8 bits (68), Expect = 1.8
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 254 QLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKM-------NQMEKTHK 306
QL E LK+ + +++KE+++ +L+ E Q++ K+ +Q++KT +
Sbjct: 429 QLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQ 488
Query: 307 EVTEQ--LQAKNRELLKQA 323
+ EQ LQ L++A
Sbjct: 489 QHQEQQALQQSTTAKLREA 507
Score = 30.0 bits (66), Expect = 3.1
Identities = 32/164 (19%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 172 KTKEQRKHLSSSSRAGHQEK--EQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESIT 229
+ KEQR+ LSS +++ + +LS +K +++ +Q+++ K K + +
Sbjct: 436 RLKEQRQ-LSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQ 494
Query: 230 TNGDSFSPDLALDSPGTDHFVI-IAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQ 288
S + L + + I +++ L+ +L + + I EK+ +L A Q
Sbjct: 495 ALQQSTTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQ 554
Query: 289 YQESQMRAKMNQMEKTHKEVTEQLQAKNRELLKQAAALSKSKKS 332
E + A +NQ+++ + + EQ+ +L Q+ + +++++
Sbjct: 555 AGEGE-TAVLNQLQEKNHTLQEQVTQLTEKLKNQSESHKQAQEN 597
Score = 30.0 bits (66), Expect = 3.1
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 254 QLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQ 313
QLK E+ ++++ L Q + + EK +E Q++ +N+++++ ++ +Q++
Sbjct: 928 QLKLELNSMQEQLIQAQNTLKQNEK-----------EEQQLQGNINELKQSSEQKKKQIE 976
Query: 314 AKNRELLKQAAALSKSKKSEK 334
A EL + A L K++ K
Sbjct: 977 ALQGEL--KIAVLQKTELENK 995
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 252 IAQLKEEVATLKKMLHQKDQMILEKEK-------KITELKADFQYQESQMRAKMNQMEKT 304
I L E + T+KK + + E EK +I L+A Q + + RA + + K
Sbjct: 1243 ITALNENLGTVKKEWQSSQRRVSELEKQTDDLRGEIAVLEATVQNNQDERRALLERCLKG 1302
Query: 305 HKEVTEQLQAKNRELLKQ 322
E+ E+LQ K EL ++
Sbjct: 1303 EGEI-EKLQTKVLELQRK 1319
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 45.4 bits (106), Expect = 7e-05
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGITG 82
RLEC+ TI+AHC+L+L SS+ P S+S+V G TG
Sbjct: 591 RLECSSTITAHCSLNLLDSSNPPTSTSQVVGTTG 624
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 45.4 bits (106), Expect = 7e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 45 YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKT 85
+++ +LEC+G I AHCNL L GS S+S+VAG TG KT
Sbjct: 17 WKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKT 57
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 44.3 bits (103), Expect = 2e-04
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSS 75
+LEC+G + AHCNLHL GSS SPAS+S
Sbjct: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 43.9 bits (102), Expect = 2e-04
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGIT 81
RLE +GTI AHCN L GS+DS AS+S+V G T
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 43.9 bits (102), Expect = 2e-04
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 49 RLECNGTISAHCNLHLPGSSDSPASSSRVAGIT 81
RLE +GTI AHCN L GS+DS AS+S+V G T
Sbjct: 33 RLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 43.9 bits (102), Expect = 2e-04
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 168 RVLQKTKEQRKHLSSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFES 227
+VLQ+ K + +H A Q +E ++++S G + S +QNE+ + E
Sbjct: 1241 KVLQQVKAESEHKRKKLDA--QVQELHAKVSEGDRLRVELAEKASKLQNELDNVSTLLEE 1298
Query: 228 ITTNGDSFSPDLA-LDSPGTDHFVI--------------IAQLKEEVATLKKMLHQKDQM 272
G F+ D A L+S D + I QL+EE +L++ ++++
Sbjct: 1299 AEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEA 1358
Query: 273 ILEKEKKITELK---ADFQYQESQMRAKMNQMEKTHKEVTEQLQAKNRELLKQAAALSKS 329
EK++ L+ AD + + + +E+ K++ + +A ++ L ++A A K
Sbjct: 1359 RKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLLKDAEALSQRLEEKALAYDKL 1418
Query: 330 KKSE 333
+K++
Sbjct: 1419 EKTK 1422
Score = 31.2 bits (69), Expect = 1.4
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 255 LKEEVATLKKMLHQ-------KDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKE 307
L EE+ LK L + ++ ++E+++ ELK + + A++ M + H
Sbjct: 1144 LSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHAT 1203
Query: 308 VTEQLQAKNRELLKQAAALSKSKK 331
E+L + + + A L K+K+
Sbjct: 1204 ALEELSEQLEQAKRFKANLEKNKQ 1227
Score = 30.4 bits (67), Expect = 2.4
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 255 LKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQA 314
LK+ A ++ +D++I + K ++K D+Q + + RA +++ KE ++L++
Sbjct: 1626 LKDLEAQIEAANKARDEVIKQLRKLQAQMK-DYQRELEEARASRDEIFAQSKESEKKLKS 1684
Query: 315 KNRELLKQAAALSKSKKSEK 334
E+L+ L+ S+++ +
Sbjct: 1685 LEAEILQLQEELASSERARR 1704
Score = 29.3 bits (64), Expect = 5.3
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 255 LKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQE----SQMRAKMNQMEKTHKEVTE 310
L E+A + + D + E++ ELKA Q E S+ +A ++ +E ++ E
Sbjct: 1769 LNAELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATISALEAKIGQLEE 1828
Query: 311 QLQAKNRELLKQAAALSKSKKSEK 334
QL+ + +E +AAA +++EK
Sbjct: 1829 QLEQEAKE---RAAANKLVRRTEK 1849
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.127 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,649,558
Number of Sequences: 37866
Number of extensions: 646670
Number of successful extensions: 5144
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 3867
Number of HSP's gapped (non-prelim): 1571
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.