Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM111B Sequence: fasta or formatted (704aa) NCBI GI: 218156275
Description:

hypothetical protein LOC374393 isoform b

Not currently referenced in the text

Other entries for this name:
alt mRNA {704aa} hypothetical protein LOC374393 isoform b
alt prot {734aa} hypothetical protein LOC374393 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         24           1
 C cysteine            3.0         21           2
 D aspartate           5.0         35           1
 E glutamate           6.8         48           2
 F phenylalanine       4.5         32           1
 G glycine             5.5         39           2
 H histidine           3.4         24           1
 I isoleucine          6.5         46           2
 K lysine             10.2         72           3
 L leucine             7.7         54           2
 M methionine          2.0         14           1
 N asparagine          6.5         46           2
 P proline             4.0         28           2
 Q glutamine           4.7         33           2
 R arginine            4.1         29           3
 S serine              7.5         53           2
 T threonine           5.4         38           2
 V valine              4.4         31           2
 W tryptophan          1.1          8           1
 Y tyrosine            4.1         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC374393 isoform b 
FAM111B               1.000   hypothetical protein LOC374393 isoform b 
FAM111B               1.000   hypothetical protein LOC374393 isoform a 
FAM111A               0.164   hypothetical protein LOC63901 
FAM111A               0.164   hypothetical protein LOC63901 
FAM111A               0.164   hypothetical protein LOC63901 
FAM111A               0.164   hypothetical protein LOC63901 
FAM111A               0.164   hypothetical protein LOC63901 
SATB1                 0.010   special AT-rich sequence binding protein 1 
SATB1                 0.010   special AT-rich sequence binding protein 1 
INCENP                0.009   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.009   inner centromere protein antigens 135/155kDa isofor...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
CYLC1                 0.008   cylicin, basic protein of sperm head cytoskeleton 1...
B4GALNT3              0.008   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
NMI                   0.008   N-myc and STAT interactor 
TCHH                  0.007   trichohyalin 
CENPE                 0.007   centromere protein E 
RUFY2                 0.007   RUN and FYVE domain-containing 2 isoform a 
RBBP6                 0.006   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.006   retinoblastoma-binding protein 6 isoform 1 
MNS1                  0.006   meiosis-specific nuclear structural 1 
RAD50                 0.006   RAD50 homolog isoform 2 
RAD50                 0.006   RAD50 homolog isoform 1 
TCHP                  0.006   trichoplein 
TCHP                  0.006   trichoplein 
OLFML2A               0.006   olfactomedin-like 2A 
MYH13                 0.006   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CNTLN                 0.006   centlein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press