Guide to the Human Genome
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Name: TMEM179B Sequence: fasta or formatted (219aa) NCBI GI: 40786402
Description:

transmembrane protein 179B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         27           4
 C cysteine            4.1          9           1
 D aspartate           1.4          3           1
 E glutamate           3.7          8           1
 F phenylalanine       3.7          8           1
 G glycine             5.9         13           1
 H histidine           1.4          3           1
 I isoleucine          5.0         11           2
 K lysine              0.9          2           1
 L leucine            15.5         34           5
 M methionine          0.9          2           1
 N asparagine          2.7          6           1
 P proline             4.1          9           2
 Q glutamine           2.7          6           1
 R arginine            5.0         11           1
 S serine             12.8         28           2
 T threonine           5.0         11           2
 V valine              6.8         15           2
 W tryptophan          3.2          7           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 179B 
TMEM179               0.039   transmembrane protein 179 
SLC15A4               0.017   solute carrier family 15, member 4 
IGSF1                 0.015   immunoglobulin superfamily, member 1 isoform 1 [Homo...
TMEM181               0.015   G protein-coupled receptor 178 
IRAK2                 0.012   interleukin-1 receptor-associated kinase 2 
ARPM1                 0.012   actin related protein M1 
MSTO1                 0.012   misato 
SLC38A1               0.010   amino acid transporter system A1 
SLC38A1               0.010   amino acid transporter system A1 
PTPN23                0.007   protein tyrosine phosphatase, non-receptor type 23 [...
SLC46A3               0.007   solute carrier family 46, member 3 isoform a 
SLC46A3               0.007   solute carrier family 46, member 3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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