Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF558 Sequence: fasta or formatted (402aa) NCBI GI: 21687264
Description:

zinc finger protein 558

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         14           2
 C cysteine            5.5         22           1
 D aspartate           2.2          9           1
 E glutamate           7.5         30           2
 F phenylalanine       4.0         16           1
 G glycine             6.0         24           2
 H histidine           6.5         26           2
 I isoleucine          3.0         12           1
 K lysine              9.2         37           2
 L leucine             8.2         33           2
 M methionine          0.5          2           1
 N asparagine          5.2         21           2
 P proline             4.0         16           1
 Q glutamine           3.5         14           2
 R arginine            5.7         23           1
 S serine             10.0         40           3
 T threonine           7.5         30           1
 V valine              4.5         18           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 558 
ZNF557                0.772   zinc finger protein 557 isoform a 
ZNF557                0.772   zinc finger protein 557 isoform a 
ZNF557                0.753   zinc finger protein 557 isoform b 
ZNF383                0.445   zinc finger protein 383 
ZNF157                0.435   zinc finger protein 157 
ZNF192                0.427   zinc finger protein 192 
ZNF829                0.427   zinc finger protein 829 
ZNF177                0.420   zinc finger protein 177 
ZNF317                0.417   zinc finger protein 317 
ZNF189                0.413   zinc finger protein 189 isoform 1 
ZNF708                0.410   zinc finger protein 708 
ZFP14                 0.410   zinc finger protein 14-like 
ZNF3                  0.409   zinc finger protein 3 isoform 2 
ZNF98                 0.408   zinc finger protein 98 
ZNF253                0.407   zinc finger protein 253 
ZNF420                0.404   zinc finger protein 420 
ZNF791                0.402   zinc finger protein 791 
ZNF658                0.402   zinc finger protein 658 
ZNF135                0.402   zinc finger protein 135 
ZNF25                 0.400   zinc finger protein 25 
ZNF30                 0.399   zinc finger protein 30 isoform b 
ZNF716                0.398   PREDICTED: zinc finger protein 716 
ZNF160                0.396   zinc finger protein 160 
ZNF586                0.396   zinc finger protein 586 
ZNF160                0.396   zinc finger protein 160 
ZNF160                0.396   zinc finger protein 160 
ZNF30                 0.394   zinc finger protein 30 isoform a 
ZNF30                 0.394   zinc finger protein 30 isoform a 
ZNF154                0.393   zinc finger protein 154 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press