Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 21687119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21687119 spermatogenesis associated 18 homolog [Homo
sapiens]
(538 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21687119 spermatogenesis associated 18 homolog [Homo sapiens] 1069 0.0
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 52 1e-06
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 52 1e-06
gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens] 52 1e-06
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 48 2e-05
gi|34577114 cytomatrix protein p110 [Homo sapiens] 48 3e-05
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 47 4e-05
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 47 4e-05
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 46 8e-05
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 45 1e-04
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 45 1e-04
gi|169208042 PREDICTED: similar to Golgin subfamily A member 8-l... 45 2e-04
gi|169208038 PREDICTED: similar to Golgin subfamily A member 8-l... 45 2e-04
gi|169208517 PREDICTED: similar to Golgin subfamily A member 8-l... 45 2e-04
gi|237858621 polyamine modulated factor 1 binding protein 1 isof... 45 2e-04
gi|237858619 polyamine modulated factor 1 binding protein 1 isof... 45 2e-04
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 45 2e-04
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 45 2e-04
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 44 3e-04
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 44 3e-04
gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens] 44 3e-04
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 44 3e-04
gi|156104908 myosin heavy chain 6 [Homo sapiens] 44 4e-04
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 44 4e-04
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 44 5e-04
gi|169208018 PREDICTED: similar to Golgin subfamily A member 8-l... 44 5e-04
gi|169208014 PREDICTED: Golgin subfamily A member 8-like protein... 44 5e-04
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi... 43 6e-04
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 43 6e-04
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 43 6e-04
>gi|21687119 spermatogenesis associated 18 homolog [Homo sapiens]
Length = 538
Score = 1069 bits (2764), Expect = 0.0
Identities = 538/538 (100%), Positives = 538/538 (100%)
Query: 1 MAENLKRLVSNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTA 60
MAENLKRLVSNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTA
Sbjct: 1 MAENLKRLVSNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTA 60
Query: 61 AAQEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRD 120
AAQEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRD
Sbjct: 61 AAQEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRD 120
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQ 180
MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQ
Sbjct: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQ 180
Query: 181 EDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEI 240
EDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEI
Sbjct: 181 EDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEI 240
Query: 241 AVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKA 300
AVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKA
Sbjct: 241 AVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKA 300
Query: 301 ALLSRFSDSYSQARLDAQCLLRRCIDKAETVQRIIYIATVEAFHVAKMAFRHFKIHVRKS 360
ALLSRFSDSYSQARLDAQCLLRRCIDKAETVQRIIYIATVEAFHVAKMAFRHFKIHVRKS
Sbjct: 301 ALLSRFSDSYSQARLDAQCLLRRCIDKAETVQRIIYIATVEAFHVAKMAFRHFKIHVRKS 360
Query: 361 LTPSYVGSNDFENAVLDYVICHLDLYDSQSSVNDVIRAMNVNPKISFPPVVDFCLLSDFI 420
LTPSYVGSNDFENAVLDYVICHLDLYDSQSSVNDVIRAMNVNPKISFPPVVDFCLLSDFI
Sbjct: 361 LTPSYVGSNDFENAVLDYVICHLDLYDSQSSVNDVIRAMNVNPKISFPPVVDFCLLSDFI 420
Query: 421 QEICCIAFAMQALEPPLDIAYGADGEVFNDCKYRRSYDSDFTAPLVLYHVWPALMENDCV 480
QEICCIAFAMQALEPPLDIAYGADGEVFNDCKYRRSYDSDFTAPLVLYHVWPALMENDCV
Sbjct: 421 QEICCIAFAMQALEPPLDIAYGADGEVFNDCKYRRSYDSDFTAPLVLYHVWPALMENDCV 480
Query: 481 IMKGEAVTRRGAFWNSVRSVSRCRSRSLSPICPRSQIGLNTMSRSRSPSPIRCGLPRF 538
IMKGEAVTRRGAFWNSVRSVSRCRSRSLSPICPRSQIGLNTMSRSRSPSPIRCGLPRF
Sbjct: 481 IMKGEAVTRRGAFWNSVRSVSRCRSRSLSPICPRSQIGLNTMSRSRSPSPIRCGLPRF 538
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 52.0 bits (123), Expect = 1e-06
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 102 LQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLL 161
++DT ++ + + ++ DS+L RS+ + + ++ K ES++R+
Sbjct: 1796 VKDTHEKSKKNKNRDKGEKEKKRDSSL---RSRSKRSKSSEHKSRKRTSESRSRARKRSS 1852
Query: 162 AAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQ 221
++ +Q + + +S + + +R R+ S RRS S E+RKR + K ++
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRSSRSRS----KSRGRRSV--SKEKRKRSPKHRSKSRERKR 1906
Query: 222 DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAV 281
+ D +K +R +S R SRS +PS RSRS R RS S S +
Sbjct: 1907 KRSSSRDNRKTVR-----------ARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSR 1955
Query: 282 KVRRPSPNRSKLSNVARKAALLSR 305
+ R PS S +R + SR
Sbjct: 1956 RSRTPSRRSRTPSRRSRTPSRRSR 1979
Score = 39.3 bits (90), Expect = 0.009
Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 82 LEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDD 141
+E A+ +G+ + P + ER + S ++D ++ + T + + ++
Sbjct: 1752 IEGPLLASDVGRDRSAASPVVSSM--PERASESSSEEKDDYEIFVKVKDTHEKSKKNKN- 1808
Query: 142 LVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENR-RSEP 200
+K +E K S++ + + ++ K + ++ +++ AR R++ +S ++ RS
Sbjct: 1809 ---RDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRS 1865
Query: 201 WSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP 260
S R+ + S + E K +E S+ + + +RSR+P
Sbjct: 1866 RSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTP 1925
Query: 261 SPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQ 312
S RSRS +PS + R RS + +R++ SR S + S+
Sbjct: 1926 S--------RRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSR 1969
Score = 37.0 bits (84), Expect = 0.046
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 33/215 (15%)
Query: 124 LDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDA 183
L S++ RS + V + E S+ + + ++ ++ K+ K+ E
Sbjct: 1757 LASDVGRDRSAASPVVSSMPERASE-SSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKE 1815
Query: 184 RHRNTDQRSSENR------RSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLK 237
+ R++ RS R +S + E R R + S K + + T + S +++ R+
Sbjct: 1816 KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRS-- 1873
Query: 238 EEIAVLSAEKSALQGRSS-----RSRSPSPAPRSRSCSR-------------SRSASPST 279
S +S +GR S R RSP +SR R +RS +PS
Sbjct: 1874 ------SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSR 1927
Query: 280 AVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQAR 314
+ PS R S R++ +S S + +R
Sbjct: 1928 RSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSR 1962
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 52.0 bits (123), Expect = 1e-06
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 102 LQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLL 161
++DT ++ + + ++ DS+L RS+ + + ++ K ES++R+
Sbjct: 1796 VKDTHEKSKKNKNRDKGEKEKKRDSSL---RSRSKRSKSSEHKSRKRTSESRSRARKRSS 1852
Query: 162 AAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQ 221
++ +Q + + +S + + +R R+ S RRS S E+RKR + K ++
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRSSRSRS----KSRGRRSV--SKEKRKRSPKHRSKSRERKR 1906
Query: 222 DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAV 281
+ D +K +R +S R SRS +PS RSRS R RS S S +
Sbjct: 1907 KRSSSRDNRKTVR-----------ARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSR 1955
Query: 282 KVRRPSPNRSKLSNVARKAALLSR 305
+ R PS S +R + SR
Sbjct: 1956 RSRTPSRRSRTPSRRSRTPSRRSR 1979
Score = 39.3 bits (90), Expect = 0.009
Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 82 LEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDD 141
+E A+ +G+ + P + ER + S ++D ++ + T + + ++
Sbjct: 1752 IEGPLLASDVGRDRSAASPVVSSM--PERASESSSEEKDDYEIFVKVKDTHEKSKKNKN- 1808
Query: 142 LVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENR-RSEP 200
+K +E K S++ + + ++ K + ++ +++ AR R++ +S ++ RS
Sbjct: 1809 ---RDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRS 1865
Query: 201 WSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP 260
S R+ + S + E K +E S+ + + +RSR+P
Sbjct: 1866 RSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTP 1925
Query: 261 SPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQ 312
S RSRS +PS + R RS + +R++ SR S + S+
Sbjct: 1926 S--------RRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSR 1969
Score = 37.0 bits (84), Expect = 0.046
Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 33/215 (15%)
Query: 124 LDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDA 183
L S++ RS + V + E S+ + + ++ ++ K+ K+ E
Sbjct: 1757 LASDVGRDRSAASPVVSSMPERASE-SSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKE 1815
Query: 184 RHRNTDQRSSENR------RSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLK 237
+ R++ RS R +S + E R R + S K + + T + S +++ R+
Sbjct: 1816 KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRS-- 1873
Query: 238 EEIAVLSAEKSALQGRSS-----RSRSPSPAPRSRSCSR-------------SRSASPST 279
S +S +GR S R RSP +SR R +RS +PS
Sbjct: 1874 ------SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSR 1927
Query: 280 AVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQAR 314
+ PS R S R++ +S S + +R
Sbjct: 1928 RSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSR 1962
>gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens]
Length = 1219
Score = 52.0 bits (123), Expect = 1e-06
Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 13/200 (6%)
Query: 95 VDSKVPSLQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKN 154
V +K+ LQ+T ++ + K S + ++ +QL+ + S + ++ + EKNL E K
Sbjct: 690 VQAKLSELQETSEQAQSKFKSEK-QNRKQLELKVTSLEEELTDLRVEKESLEKNLSERKK 748
Query: 155 RSAISLLAAEEEINQLKK----QLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQ 210
+SA AEEEI++++K +L L+ +TDQ ++E L+ + +
Sbjct: 749 KSAQERSQAEEEIDEIRKSYQEELDKLRQLLKKTRVSTDQAAAEQLSLVQAELQTQWEAK 808
Query: 211 WNSLKQNADQQDTEAMSD-------YKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPA 263
L +A + + + Y+++L L+E+ L A+ +AL ++ +
Sbjct: 809 CEHLLASAKDEHLQQYQEVCAQRDAYQQKLVQLQEKCLALQAQITALTKQNEQHIKELEK 868
Query: 264 PRSRSCSRSRSAS-PSTAVK 282
+S+ +AS PS VK
Sbjct: 869 NKSQMSGVEAAASDPSEKVK 888
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 48.1 bits (113), Expect = 2e-05
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 34/180 (18%)
Query: 108 RERHKDPSPRDRDMQQLDSNLNSTRSQC-NQVQDDLVETEKNLEESKNRSAISLLAAEEE 166
RE+H++ + ++Q+L S N+ +Q ++ + D ++ + LEE+K + A+ L AEE
Sbjct: 1393 REQHEEEAEAQAELQRLLSKANAEVAQWRSKYEADAIQRTEELEEAKKKLALRLQEAEEG 1452
Query: 167 INQLKKQLKSLQ------------------------AQEDARHRNTDQRSSENRRSEPWS 202
+ + SL+ A D + R+ ++ E RR E
Sbjct: 1453 VEAANAKCSSLEKAKLRLQTESEDVTLELERATSAAAALDKKQRHLERALEERRRQEEEM 1512
Query: 203 LEERKREQWNS--------LKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRS 254
E + Q S ++ ++ EA+ K++ +NL+EEI+ L+ ++ +L G+S
Sbjct: 1513 QRELEAAQRESRGLGTELFRLRHGHEEALEALETLKRENKNLQEEISDLT-DQVSLSGKS 1571
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 47.8 bits (112), Expect = 3e-05
Identities = 64/312 (20%), Positives = 132/312 (42%), Gaps = 33/312 (10%)
Query: 42 ELIEQVAKVQGQLFGILTAAAQEGGRNDG----VETIKSRLLPWLEASFTAASLGKSVDS 97
+L ++++K + +L + T +N +E +K L + AA L VD+
Sbjct: 438 QLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQR---AAILQTEVDA 494
Query: 98 KVPSLQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKN---LEESKN 154
L+ E+ + + + +Q L + + ++D L E+ L++
Sbjct: 495 LRLRLE-----EKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIE 549
Query: 155 RSAISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSL 214
L ++++ LK ++KSLQ D+ + +T + E SE + ER +EQ
Sbjct: 550 NLQEQLRDKDKQLTNLKDRVKSLQT--DSSNTDTALATLEEALSEKERIIERLKEQ---- 603
Query: 215 KQNADQQDTEAMSDYKKQLRNLKEEIAVLSAE----KSALQGRSSRSRSPSPAPRSRSCS 270
++ D++ E + ++K+ ++LKE++ L AE +S+L + S + A R
Sbjct: 604 RERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRD-- 661
Query: 271 RSRSASPSTAVKVRRPSPNR-----SKLSNVARKAALLSRFSDSYSQARLDAQCLLRRCI 325
S+ S A++ ++ ++ K N+ + + F+D Q +A C
Sbjct: 662 -SKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECG 720
Query: 326 DKAETVQRIIYI 337
V R++ I
Sbjct: 721 KAQAEVDRLLEI 732
Score = 37.0 bits (84), Expect = 0.046
Identities = 43/204 (21%), Positives = 84/204 (41%), Gaps = 29/204 (14%)
Query: 75 KSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHK--------------------DP 114
+S L+ E + + AS G DSK+ SL+ ++++ + +P
Sbjct: 640 ESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNP 699
Query: 115 SPRDRDMQQLDSNLNSTRSQCNQVQ---DDLVETEKNLEESKNRSAISLLAAE----EEI 167
D+ ++QLD + R +C + Q D L+E K +E KN + E +
Sbjct: 700 EFADQ-IKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHM 758
Query: 168 NQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMS 227
K++ +L+ + + Q E RR E + + Q L NA ++ + +
Sbjct: 759 KDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEEL-MNALEKTRQELD 817
Query: 228 DYKKQLRNLKEEIAVLSAEKSALQ 251
K +L + ++ +A A + L+
Sbjct: 818 ATKARLASTQQSLAEKEAHLANLR 841
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 47.0 bits (110), Expect = 4e-05
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 26/261 (9%)
Query: 63 QEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKD----PSPRD 118
++GGR+ KSR +S + S K SK S R R KD SP
Sbjct: 303 RKGGRSRSHTRSKSR------SSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHK 356
Query: 119 RDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQ 178
+ + + + +RS + D E K E K + E+E + K++ K
Sbjct: 357 KRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDR------EKEREREKEREK--- 407
Query: 179 AQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKE 238
E R +N D+ + E ++R+RE+ +++ D++ + K++ ++ +
Sbjct: 408 --EKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSK 465
Query: 239 EI--AVLSAEKSALQGRS---SRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKL 293
EI +KS RS SR S R R SRS S SP T+ ++R S
Sbjct: 466 EIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 525
Query: 294 SNVARKAALLSRFSDSYSQAR 314
+ +K + D S+ R
Sbjct: 526 RSRNKKDKKREKERDHISERR 546
Score = 35.4 bits (80), Expect = 0.13
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 107 DRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEE 166
D+ER KD R++D ++ + ++ ++ E +K E K+RS +E
Sbjct: 418 DKEREKD---REKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRS--------KE 466
Query: 167 INQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAM 226
I++ +K+ D + R + + +RRS S E R+R +S + + +
Sbjct: 467 IDEKRKK--------DKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRK 518
Query: 227 SDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPS 261
S R+ ++ E+ + R R RS S
Sbjct: 519 SSRSPSPRSRNKKDKKREKERDHISERRERERSTS 553
Score = 29.3 bits (64), Expect = 9.5
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 212 NSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSR 271
N++ + + A + ++ ++ ++E + +SA G+S+ + +RS SR
Sbjct: 258 NAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSR 317
Query: 272 SRSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQAR 314
S S S S + R S +RS+ N +R R S S + R
Sbjct: 318 SSSKSHSR--RKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKR 358
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 47.0 bits (110), Expect = 4e-05
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 26/261 (9%)
Query: 63 QEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKD----PSPRD 118
++GGR+ KSR +S + S K SK S R R KD SP
Sbjct: 187 RKGGRSRSHTRSKSR------SSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHK 240
Query: 119 RDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQ 178
+ + + + +RS + D E K E K + E+E + K++ K
Sbjct: 241 KRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDR------EKEREREKEREK--- 291
Query: 179 AQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKE 238
E R +N D+ + E ++R+RE+ +++ D++ + K++ ++ +
Sbjct: 292 --EKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSK 349
Query: 239 EI--AVLSAEKSALQGRS---SRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKL 293
EI +KS RS SR S R R SRS S SP T+ ++R S
Sbjct: 350 EIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 409
Query: 294 SNVARKAALLSRFSDSYSQAR 314
+ +K + D S+ R
Sbjct: 410 RSRNKKDKKREKERDHISERR 430
Score = 35.4 bits (80), Expect = 0.13
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 107 DRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEE 166
D+ER KD R++D ++ + ++ ++ E +K E K+RS +E
Sbjct: 302 DKEREKD---REKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRS--------KE 350
Query: 167 INQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAM 226
I++ +K+ D + R + + +RRS S E R+R +S + + +
Sbjct: 351 IDEKRKK--------DKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRK 402
Query: 227 SDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPS 261
S R+ ++ E+ + R R RS S
Sbjct: 403 SSRSPSPRSRNKKDKKREKERDHISERRERERSTS 437
Score = 29.3 bits (64), Expect = 9.5
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 212 NSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSR 271
N++ + + A + ++ ++ ++E + +SA G+S+ + +RS SR
Sbjct: 142 NAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSR 201
Query: 272 SRSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQAR 314
S S S S + R S +RS+ N +R R S S + R
Sbjct: 202 SSSKSHSR--RKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKR 242
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 46.2 bits (108), Expect = 8e-05
Identities = 61/264 (23%), Positives = 117/264 (44%), Gaps = 52/264 (19%)
Query: 11 NETLRTLQEKLDFWLKEYNTNTCDQNLNHCL---------ELIEQVAKVQGQLFGILTAA 61
++ +++L+EKL+ K N C NH L EL + AKV +L +A
Sbjct: 228 DQEIKSLREKLN---KLRQQNACLVTQNHSLMTKFESIHFELTQSRAKVS-----MLESA 279
Query: 62 AQEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRDM 121
Q+ V ++ +++ LEA +A QD RE + +
Sbjct: 280 QQQAA---SVPILEEQIIN-LEAEVSA--------------QDKVLREAENKLEQSQKMV 321
Query: 122 QQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEE---EINQLKK----QL 174
+ + +L ++ +C +++ DL+E K + ++ + +L AEE Q KK +L
Sbjct: 322 IEKEQSLQESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKL 381
Query: 175 KSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLR 234
+ +QA+E+ RN EN+R L+ER L ++ + E + K++
Sbjct: 382 EKVQAEEEILERNLTNCEKENKR-----LQER-----CGLYKSELEILKEKLRQLKEENN 431
Query: 235 NLKEEIAVLSAEKSALQGRSSRSR 258
N KE++ +++ + S + + + SR
Sbjct: 432 NGKEKLRIMAVKNSEVMAQLTESR 455
Score = 32.3 bits (72), Expect = 1.1
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 134 QCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQ---------AQEDAR 184
+CN+ + L + +N +E +L E+EI+QLKK+++ Q +E +
Sbjct: 1180 ECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQ 1239
Query: 185 HRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLS 244
+ T + + + E E+ + L + A Q +A + ++ L + E++ LS
Sbjct: 1240 YIATQYKEAIDLGQELRLTREQVQNSHTELAE-ARHQQVQAQREIER-LSSELEDMKQLS 1297
Query: 245 AEKSA 249
EK A
Sbjct: 1298 KEKDA 1302
Score = 29.6 bits (65), Expect = 7.3
Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 109 ERHKDPSPRDRDMQQLDSNLNSTRSQCNQV-------QDDLVETEKNLEESKNRSAISLL 161
E K+ +D ++ L + ++ + Q+ +++LV LE +K + L
Sbjct: 818 EMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLK 877
Query: 162 AAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQ 221
EE+ L+K+LK ++ Q +SE +L+++++ +N + +
Sbjct: 878 KKSEEVYCLQKELKI--------KNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELE 929
Query: 222 DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPA 263
DT+ + +KQ+ L++E+ E SA + R + S A
Sbjct: 930 DTQ--TKLEKQVSKLEQELQ-KQRESSAEKLRKMEEKCESAA 968
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 45.4 bits (106), Expect = 1e-04
Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 118 DRDMQQLDSNLNSTRSQCNQVQD-----DLVETEKNLEESKNRSAISLLA-AEEEINQLK 171
++ +Q+ +Q ++ D D+ E + N+ + K + L E++++ LK
Sbjct: 539 NKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 598
Query: 172 KQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKK 231
+++KSLQA D + +T + E +E ER +EQ + +++ E + +YKK
Sbjct: 599 ERVKSLQA--DTTNTDTALTTLEEALAEKERTIERLKEQ----RDRDEREKQEEIDNYKK 652
Query: 232 QLRNLKEEIAVLSAEKS 248
L++LKE++++L + S
Sbjct: 653 DLKDLKEKVSLLQGDLS 669
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 45.4 bits (106), Expect = 1e-04
Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 118 DRDMQQLDSNLNSTRSQCNQVQD-----DLVETEKNLEESKNRSAISLLA-AEEEINQLK 171
++ +Q+ +Q ++ D D+ E + N+ + K + L E++++ LK
Sbjct: 511 NKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 570
Query: 172 KQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKK 231
+++KSLQA D + +T + E +E ER +EQ + +++ E + +YKK
Sbjct: 571 ERVKSLQA--DTTNTDTALTTLEEALAEKERTIERLKEQ----RDRDEREKQEEIDNYKK 624
Query: 232 QLRNLKEEIAVLSAEKS 248
L++LKE++++L + S
Sbjct: 625 DLKDLKEKVSLLQGDLS 641
>gi|169208042 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 2 [Homo sapiens]
Length = 595
Score = 45.1 bits (105), Expect = 2e-04
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISL------LAAEEEINQLKKQL 174
M ++ + + + + Q + E E++L + KN+ A L + +E E+ L+K+L
Sbjct: 248 MSKMSQEICTLKKEKQQDMRRVEELERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKEL 307
Query: 175 KSLQAQEDARHRNTDQRSSENRRSEP---------WSLEERKREQWNSLKQNADQQ---- 221
+ + + ++ +N S NRR E EER +EQ L+Q A Q
Sbjct: 308 ERVAGELQSQVKNNQHISLLNRRQEERIREQEERLRKQEERLQEQHEKLRQLAKPQSVFE 367
Query: 222 ----DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP-SPAPRSRSCS 270
+ ++ ++Q++ L+E++ + +++ Q +R P +P P S S
Sbjct: 368 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 421
>gi|169208038 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 2 [Homo sapiens]
Length = 595
Score = 45.1 bits (105), Expect = 2e-04
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISL------LAAEEEINQLKKQL 174
M ++ + + + + Q + E E++L + KN+ A L + +E E+ L+K+L
Sbjct: 248 MSKMSQEICTLKKEKQQDMRRVEELERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKEL 307
Query: 175 KSLQAQEDARHRNTDQRSSENRRSEP---------WSLEERKREQWNSLKQNADQQ---- 221
+ + + ++ +N S NRR E EER +EQ L+Q A Q
Sbjct: 308 ERVAGELQSQVKNNQHISLLNRRQEERIREQEERLRKQEERLQEQHEKLRQLAKPQSVFE 367
Query: 222 ----DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP-SPAPRSRSCS 270
+ ++ ++Q++ L+E++ + +++ Q +R P +P P S S
Sbjct: 368 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 421
>gi|169208517 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 2 [Homo sapiens]
Length = 602
Score = 45.1 bits (105), Expect = 2e-04
Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISL------LAAEEEINQLKKQL 174
M+++ + + + + Q + + E++L + KN+ A L + +E E+ L+K+L
Sbjct: 255 MRKMSQEICTLKKEKQQDMRRVEKLERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKEL 314
Query: 175 KSLQAQEDARHRNTDQRSSENRRSEP---------WSLEERKREQWNSLKQNADQQ---- 221
+ + + A+ +N + S N+R E EER +EQ SL+Q A Q
Sbjct: 315 ERVAGELQAQVKNNQRISLLNQRQEERIREQEERLRKQEERIQEQHKSLQQLAKPQSVFE 374
Query: 222 ----DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP-SPAPRSRSCS 270
+ ++ ++Q++ L+E++ + +++ Q +R P +P P S S
Sbjct: 375 EPNNENKSTLQLEQQVKELQEKLGEVKESETSAQKEPEAARGPAAPGPGGESSS 428
Score = 34.3 bits (77), Expect = 0.30
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 157 AISLLAAEEEINQLKKQLKSL-QAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLK 215
A+ L + EI+QLK +KSL Q ++ H+ +++ + N++ + + E + + N K
Sbjct: 82 AVVLDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQLQTLNIQK 141
Query: 216 QNADQQDTEAMSDYKKQLRNLKEEIAVLSAE-KSALQGRSSRSRSPSPAPRSRSCSRSRS 274
+ + + K+ LR +E+ L+ + +LQ + S ++ ++
Sbjct: 142 EELNTD----LYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSDVMATQKKKANQL 197
Query: 275 ASPSTAVKVRRPSPNRSKLSNVARKAAL----LSRFSDSYSQARLD 316
+SPS A KL R+ AL L++ +S+ Q +L+
Sbjct: 198 SSPSKA-------GTEWKLEQSMREEALLKVQLTQLKESFQQVQLE 236
>gi|237858621 polyamine modulated factor 1 binding protein 1 isoform
b [Homo sapiens]
Length = 882
Score = 45.1 bits (105), Expect = 2e-04
Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 28/238 (11%)
Query: 12 ETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTAAAQEGGRNDGV 71
E LR +K D LKE + ++N N EL +++ L T+ N +
Sbjct: 493 EALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEI 552
Query: 72 ETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDR----DMQQLDSN 127
K L+ A L K++ + LQ T +E + S + D+ Q
Sbjct: 553 ALQKESLMS------LQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEK 606
Query: 128 LNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRN 187
LN S+ +Q L +T+ E K + ++A EE + +L +L+ L R
Sbjct: 607 LNHVTSETKSLQQSLTQTQ----EKKAQLEEEIIAYEERMKKLNTELRKL--------RG 654
Query: 188 TDQRSSENRRSEPWSLEERKRE--QWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVL 243
Q S + LEE + QW QN D + ++ ++QLR +EE+A L
Sbjct: 655 FHQESELEVHAFDKKLEEMSCQVLQWQKQHQN----DLKMLAAKEEQLREFQEEMAAL 708
>gi|237858619 polyamine modulated factor 1 binding protein 1 isoform
a [Homo sapiens]
Length = 1007
Score = 45.1 bits (105), Expect = 2e-04
Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 28/238 (11%)
Query: 12 ETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTAAAQEGGRNDGV 71
E LR +K D LKE + ++N N EL +++ L T+ N +
Sbjct: 638 EALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNKEI 697
Query: 72 ETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDR----DMQQLDSN 127
K L+ A L K++ + LQ T +E + S + D+ Q
Sbjct: 698 ALQKESLMS------LQAQLDKALQKEKHYLQTTITKEAYDALSRKSAACQDDLTQALEK 751
Query: 128 LNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRN 187
LN S+ +Q L +T+ E K + ++A EE + +L +L+ L R
Sbjct: 752 LNHVTSETKSLQQSLTQTQ----EKKAQLEEEIIAYEERMKKLNTELRKL--------RG 799
Query: 188 TDQRSSENRRSEPWSLEERKRE--QWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVL 243
Q S + LEE + QW QN D + ++ ++QLR +EE+A L
Sbjct: 800 FHQESELEVHAFDKKLEEMSCQVLQWQKQHQN----DLKMLAAKEEQLREFQEEMAAL 853
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 45.1 bits (105), Expect = 2e-04
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 150 EESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKRE 209
E+ + S +L A+EEE + KK + +++ + H + RSS S R R
Sbjct: 175 EDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS-------RSRS 227
Query: 210 QWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSC 269
+ S ++ Q + + S + + R K + S S+ + S S S S R+R
Sbjct: 228 RSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR 287
Query: 270 SRSRSASPSTAVK--VRRPSPNRSKLSN 295
SRSRS+S K R SP R S+
Sbjct: 288 SRSRSSSSGDRKKRRTRSRSPERRHRSS 315
Score = 35.4 bits (80), Expect = 0.13
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 44/210 (20%)
Query: 126 SNLN-STRSQCNQVQDDLVETEK--NLEES-------KNRSAISLLAAEE------EINQ 169
SN+N + RS+CN + T K LEE R + + EE E +
Sbjct: 75 SNVNWARRSECN-----MCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGR 129
Query: 170 LKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDY 229
KK+ + + + + + SE EE + E + K + D+ + +A D
Sbjct: 130 KKKKYRGKAVGPASILKEVEDKESEGE-------EEDEDEDLSKYKLDEDEDEDDA--DL 180
Query: 230 KKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPN 289
K + EE E S + + RSRS S + SRS SRS S S S + R S +
Sbjct: 181 SKYNLDASEE------EDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS---RSRSRSRS 231
Query: 290 RSKLSNVAR-----KAALLSRFSDSYSQAR 314
RS S+ +R + SR S S S +R
Sbjct: 232 RSSSSSQSRSRSSSRERSRSRGSKSRSSSR 261
Score = 34.3 bits (77), Expect = 0.30
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 11/154 (7%)
Query: 163 AEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQD 222
+E E + L + ED + D SE ++K + + K +
Sbjct: 153 SEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSR 212
Query: 223 TEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSR--------- 273
+ + S R+ + S+ + SSR RS S +SRS SRS
Sbjct: 213 SSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Query: 274 --SASPSTAVKVRRPSPNRSKLSNVARKAALLSR 305
S+S S+ + R+ S +RS S +K SR
Sbjct: 273 SYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/190 (21%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 132 RSQCNQVQDDLVETEKNLEESKNR-------SAISLLAAEEEINQLKKQLKSLQAQEDAR 184
+S+ NQ+ L+ETE+ L E+ R S+ L+ E+++ L QLK + +E +
Sbjct: 413 QSEINQLHSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADL--QLKLSRLEEQLK 470
Query: 185 HRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLS 244
+ T+ +++ + +++ ++ +L+Q+ + EA +D ++ LR + ++ +
Sbjct: 471 EKVTNSTELQHQLDK----TKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKDQKIQ 526
Query: 245 AEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKAALLS 304
++ LQ +S + S R ++ ++ TAV + N + V + L
Sbjct: 527 NLEALLQ-KSKENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHTLQEQVTQLTEKLK 585
Query: 305 RFSDSYSQAR 314
S+S+ QA+
Sbjct: 586 NQSESHKQAQ 595
Score = 41.6 bits (96), Expect = 0.002
Identities = 52/264 (19%), Positives = 108/264 (40%), Gaps = 30/264 (11%)
Query: 94 SVDSKVPSLQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDL-VETEKNLEES 152
+V K+ + D+ + S +++ Q+ + + C +++ L V+ E L+E
Sbjct: 857 TVKDKLSKVSDSLKNSK----SEFEKENQKGKAAILDLEKTCKELKHQLQVQMENTLKEQ 912
Query: 153 KNRSAISLLAAEEEINQLKKQLKS-----LQAQEDARHRNTDQRSSENRRSEPWSLEERK 207
K SL +E +QLK +L S +QAQ + +++ + +E E+K
Sbjct: 913 KELKK-SLEKEKEASHQLKLELNSMQEQLIQAQNTLKQNEKEEQQLQGNINELKQSSEQK 971
Query: 208 REQWNSLK---QNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAP 264
++Q +L+ + A Q TE + ++QL +E+A + S LQ +S+
Sbjct: 972 KKQIEALQGELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQETFKQL 1031
Query: 265 RS----------------RSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSD 308
+S +S S + + R N++KL + A
Sbjct: 1032 QSDFYGRESELLATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELKTAKATLEQDS 1091
Query: 309 SYSQARLDAQCLLRRCIDKAETVQ 332
+ + +L +C + I K ++++
Sbjct: 1092 AKKEQQLQERCKALQDIQKEKSLK 1115
Score = 40.8 bits (94), Expect = 0.003
Identities = 54/277 (19%), Positives = 118/277 (42%), Gaps = 35/277 (12%)
Query: 3 ENLKRLVSNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTAAA 62
+ LK+ + E + Q KL+ N+ + L ++Q K + QL G +
Sbjct: 913 KELKKSLEKEKEASHQLKLEL-------NSMQEQLIQAQNTLKQNEKEEQQLQGNINELK 965
Query: 63 QEGG-RNDGVETI----------KSRLLPWLEASFTAASLGKSVDS-KVPSLQDTFDRER 110
Q + +E + K+ L L+ T A+ + + K+ LQ+ +++ +
Sbjct: 966 QSSEQKKKQIEALQGELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQ 1025
Query: 111 H------KDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETE-------KNLEESKNRSA 157
D R+ ++ +L S + + Q+DL+ K ++E K A
Sbjct: 1026 ETFKQLQSDFYGRESELLATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELKTAKA 1085
Query: 158 ISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQN 217
+ ++ QL+++ K+LQ + + ++ ++ N +S+ +EE K Q + +
Sbjct: 1086 TLEQDSAKKEQQLQERCKALQ--DIQKEKSLKEKELVNEKSKLAEIEEIKCRQEKEITKL 1143
Query: 218 ADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRS 254
++ + + K ++ NLK+ +L +K LQG++
Sbjct: 1144 NEELKSHKLESIK-EITNLKDAKQLLIQQKLELQGKA 1179
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 44.3 bits (103), Expect = 3e-04
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 108 RERHKDPSPRDRDMQQLDSNLNSTRSQCN-QVQDDLVETEKNLEESKNRSAISLLAAEEE 166
RE++++ + ++Q++ S NS +Q + + D ++ + LEE+K + A L AEE
Sbjct: 1344 REQYEEETEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEA 1403
Query: 167 INQLKKQLKSLQ------------------------AQEDARHRNTDQRSSE--NRRSEP 200
+ + + SL+ A D + RN D+ +E + E
Sbjct: 1404 VEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEES 1463
Query: 201 WSLEERKREQWNSLK------QNADQQDTEAMSDYKKQLRNLKEEIAVLSAE 246
S E +++ SL +NA ++ E + +K++ +NL+EEI+ L+ +
Sbjct: 1464 QSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQ 1515
Score = 34.7 bits (78), Expect = 0.23
Identities = 52/256 (20%), Positives = 113/256 (44%), Gaps = 25/256 (9%)
Query: 10 SNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTAAAQEGGRND 69
S + R+L +L F LK N +++L H + +Q ++ + G
Sbjct: 1470 SQKEARSLSTEL-FKLK----NAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTIH 1524
Query: 70 GVETIKSRL----LPWLEASFTAASLGKSVDSKVPSLQDTFDR---ERHKDPSPRDRDMQ 122
+E ++ +L + A A + + + K+ Q F++ E + + +D +M+
Sbjct: 1525 ELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEME 1584
Query: 123 QLDSN-------LNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLK 175
Q N L ++ + +++ + +K +E N I L A + +KQ+K
Sbjct: 1585 QAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVK 1644
Query: 176 SLQA-QEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLR 234
SLQ+ +D + + D + + E ++ ER+ N+L Q A+ ++ A+ + ++ R
Sbjct: 1645 SLQSLLKDTQIQLDDAVRANDDLKENIAIVERR----NNLLQ-AELEELRAVVEQTERSR 1699
Query: 235 NLKEEIAVLSAEKSAL 250
L E+ + ++E+ L
Sbjct: 1700 KLAEQELIETSERVQL 1715
Score = 30.4 bits (67), Expect = 4.3
Identities = 29/142 (20%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 112 KDPSPRDRDMQQLDSNLNSTR----SQCNQVQ---DDLVET------EKNLEESKNRSAI 158
K+ + R D +++++ L + + +C++++ DDL T EK+ E+K ++
Sbjct: 920 KEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLT 979
Query: 159 SLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNA 218
+A +EI + K K +A ++A + D +E + + + K EQ + +
Sbjct: 980 EEMAGLDEI--IAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGS 1037
Query: 219 DQQDTEAMSDYKKQLRNLKEEI 240
+Q+ + D ++ R L+ ++
Sbjct: 1038 LEQEKKVRMDLERAKRKLEGDL 1059
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 44.3 bits (103), Expect = 3e-04
Identities = 36/183 (19%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 78 LLPWLEASFTAASLGKSVDSKVPSLQ---------DTFDRERHKDPSPRDRDMQQLDSNL 128
LLP + A LGK + S LQ + ++++ + ++ +Q+ + +
Sbjct: 245 LLPQQQLQAEADHLGKELQSVSAKLQAQVEENELWNRLNQQQEEKMWRQEEKIQEREEKI 304
Query: 129 NSTRSQCNQVQDDLVETEKNL---EESKNRSAISLLAAEEEINQLKKQL---KSLQAQED 182
+ + ++ + E+ + EE R + EE+I +L++++ + ++ QE+
Sbjct: 305 QEQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQEE 364
Query: 183 ARHRNTDQRSSENRRSEP---WSLEERKREQWNSLKQNAD--QQDTEAMSDYKKQLRNLK 237
R R E R+ + W EE+ REQ +++ + Q+ E M + ++++ +
Sbjct: 365 KRQEEEKIREQEKRQEQEAKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQEEKMWEQE 424
Query: 238 EEI 240
EE+
Sbjct: 425 EEM 427
Score = 30.4 bits (67), Expect = 4.3
Identities = 21/140 (15%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 108 RERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEI 167
RE+ + ++ MQ+ + + + + ++++ E E+ + + + E+
Sbjct: 393 REQEEKIREQEEMMQEQEEKMGEQEEKMWEQEEEMQEQEEKMRRQEEKIREQEKKIREQE 452
Query: 168 NQLKKQLKSLQAQE----DARHRNTDQRSSENRRSEPWSLEERK-REQWNSLKQNAD--Q 220
++++Q + +Q QE + + +Q + + E +E K REQ +++ + +
Sbjct: 453 EKIREQEEMMQEQEEKMGEQEGKMCEQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIR 512
Query: 221 QDTEAMSDYKKQLRNLKEEI 240
+ E M + ++++ +E++
Sbjct: 513 EQEEMMQEQEEKMWEQEEKM 532
>gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens]
Length = 448
Score = 44.3 bits (103), Expect = 3e-04
Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 66 GRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRDMQQLD 125
G+ + T L P L A + + G + P + + ++ + S R +Q
Sbjct: 191 GKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFK 250
Query: 126 ---SNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQED 182
S + + Q + + ++ +K ++ ++ + + E+E+ L+ QL + QAQ+
Sbjct: 251 VTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQM---EQELQDLQSQLCAEQAQQQ 307
Query: 183 ARHRNTDQRSSE------------NRRSEPWSLEERKREQWNSLKQ-NADQQDTEAMSDY 229
AR ++ E + L + +E W +++ N ++D EA+
Sbjct: 308 ARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQA 367
Query: 230 K-KQLRNLKEEIAVLSAEK 247
K K+L KEE + A+K
Sbjct: 368 KNKELEQTKEEKEKMQAQK 386
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 44.3 bits (103), Expect = 3e-04
Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 20/199 (10%)
Query: 66 GRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRDMQQLD 125
G+ + T L P L A + + G + P + + ++ + S R +Q
Sbjct: 191 GKGEVASTPSDNLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQRSLQMFK 250
Query: 126 ---SNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQED 182
S + + Q + + ++ +K ++ ++ + + E+E+ L+ QL + QAQ+
Sbjct: 251 VTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQM---EQELQDLQSQLCAEQAQQQ 307
Query: 183 ARHRNTDQRSSE------------NRRSEPWSLEERKREQWNSLKQ-NADQQDTEAMSDY 229
AR ++ E + L + +E W +++ N ++D EA+
Sbjct: 308 ARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQA 367
Query: 230 K-KQLRNLKEEIAVLSAEK 247
K K+L KEE + A+K
Sbjct: 368 KNKELEQTKEEKEKMQAQK 386
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 43.9 bits (102), Expect = 4e-04
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 108 RERHKDPSPRDRDMQQLDSNLNSTRSQCN-QVQDDLVETEKNLEESKNRSAISLLAAEEE 166
RE++++ + ++Q++ S NS +Q + + D ++ + LEE+K + A L AEE
Sbjct: 1346 REQYEEETEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEA 1405
Query: 167 INQLKKQLKSLQ------------------------AQEDARHRNTDQRSSE--NRRSEP 200
+ + + SL+ A D + RN D+ +E + E
Sbjct: 1406 VEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEES 1465
Query: 201 WSLEERKREQWNSLK------QNADQQDTEAMSDYKKQLRNLKEEIAVLSAE 246
S E +++ SL +NA ++ E + +K++ +NL+EEI+ L+ +
Sbjct: 1466 QSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQ 1517
Score = 40.8 bits (94), Expect = 0.003
Identities = 60/257 (23%), Positives = 120/257 (46%), Gaps = 27/257 (10%)
Query: 10 SNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTAAAQEGGRN- 68
S + R+L +L F LK N +++L H LE ++ K + LT EGG+N
Sbjct: 1472 SQKEARSLSTEL-FKLK----NAYEESLEH-LETFKRENKNLQEEISDLTEQLGEGGKNV 1525
Query: 69 DGVETIKSRL----LPWLEASFTAASLGKSVDSKVPSLQDTFDR---ERHKDPSPRDRDM 121
+E ++ +L L A A + + + K+ Q F++ E + + +D +M
Sbjct: 1526 HELEKVRKQLEVEKLELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEM 1585
Query: 122 QQLDSN-------LNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQL 174
+Q N L ++ + +++++ +K +E N I L A + +KQ+
Sbjct: 1586 EQAKRNHQRVVDSLQTSLDAETRSRNEVLRVKKKMEGDLNEMEIQLSHANRMAAEAQKQV 1645
Query: 175 KSLQA-QEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQL 233
KSLQ+ +D + + D + + E ++ ER+ N+L Q A+ ++ A+ + ++
Sbjct: 1646 KSLQSLLKDTQIQLDDAVRANDDLKENIAIVERR----NNLLQ-AELEELRAVVEQTERS 1700
Query: 234 RNLKEEIAVLSAEKSAL 250
R L E+ + ++E+ L
Sbjct: 1701 RKLAEQELIETSERVQL 1717
Score = 36.2 bits (82), Expect = 0.078
Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 45/195 (23%)
Query: 80 PWLEASFTAASLGKSVDSK--VPSLQDTFDRERH--------------------KDPSPR 117
PW++ F L KS +++ + ++++ F R + ++ +
Sbjct: 830 PWMKLYFKIKPLLKSAETEKEMATMKEEFGRIKETLEKSEARRKELEEKMVSLLQEKNDL 889
Query: 118 DRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSL 177
+Q NLN +C+Q+ + ++ E ++E R L EEE+N
Sbjct: 890 QLQVQAEQDNLNDAEERCDQLIKNKIQLEAKVKEMNER-----LEDEEEMN--------- 935
Query: 178 QAQEDARHRNTDQRSSENRRS-EPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNL 236
A+ A+ R + SE ++ + L K E+ +N + TE M+ L
Sbjct: 936 -AELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMA-------GL 987
Query: 237 KEEIAVLSAEKSALQ 251
E IA L+ EK ALQ
Sbjct: 988 DEIIAKLTKEKKALQ 1002
Score = 29.6 bits (65), Expect = 7.3
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 120 DMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQA 179
+ + L S L + Q +DL + ++KN A +L +A + + L++Q
Sbjct: 1295 EKEALISQLTRGKLSYTQQMEDLKRQLEEEGKAKNALAHALQSARHDCDLLREQY----- 1349
Query: 180 QEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKK----QLRN 235
+E+ + QR SE QW + + Q TE + + KK +L++
Sbjct: 1350 EEETEAKAELQRVLSKANSEV--------AQWRTKYETDAIQRTEELEEAKKKLAQRLQD 1401
Query: 236 LKEEIAVLSAEKSALQGRSSR 256
+E + ++A+ S+L+ R
Sbjct: 1402 AEEAVEAVNAKCSSLEKTKHR 1422
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 43.9 bits (102), Expect = 4e-04
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 15/191 (7%)
Query: 61 AAQEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDRERHKDPSPRDRD 120
AA+EG +D E K L + SL K SK+ L++ + ++ K
Sbjct: 553 AAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAK-------- 604
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQ 180
+Q S + QC ++L+ K S + + E+ + +Q +++AQ
Sbjct: 605 LQAQVSQMQQALEQCTS------NYREDLQALKQLSDLEREKLQRELQETTQQNHAMKAQ 658
Query: 181 EDARHRNTDQRSSENRRSEPWSLEER-KREQWNSLKQNADQQDTEAMSDYKKQLRNLKEE 239
+A H+ + + R E + EER K+E +SL+ E + +K + L+EE
Sbjct: 659 LEASHQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEE 718
Query: 240 IAVLSAEKSAL 250
+ A+++ L
Sbjct: 719 RERMQAQQALL 729
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 43.5 bits (101), Expect = 5e-04
Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 23/206 (11%)
Query: 109 ERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEIN 168
++ K SP + + +RS+ ++ ++ N+ + K+RS +
Sbjct: 243 KKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSP----------S 292
Query: 169 QLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSD 228
+ K + KS R R+ ++R E +R R R Q SL+Q+ + ++ S
Sbjct: 293 RHKSKSKS-------RSRSQERRVEEEKRGSV----SRGRSQEKSLRQSRSRSRSKGGSR 341
Query: 229 YKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSP 288
+ + R+ ++ K + + SRSRS S + RSR R + ++ K ++
Sbjct: 342 SRSRSRSKSKDKR--KGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDT 399
Query: 289 NRSKLSNVARKAALLSRFSDSYSQAR 314
+RS+ + +R + + S S R
Sbjct: 400 DRSQSRSPSRSVSKEREHAKSESSQR 425
Score = 42.4 bits (98), Expect = 0.001
Identities = 61/247 (24%), Positives = 97/247 (39%), Gaps = 66/247 (26%)
Query: 90 SLGKSVDSKVPSLQDTFDRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNL 149
S KS D +Q+ + + K SP S S ++ Q+ VE EK
Sbjct: 265 SRSKSKDQAEEKIQNNDNVGKPKSRSP---------SRHKSKSKSRSRSQERRVEEEKRG 315
Query: 150 EESKNRSAISLLAAEEEINQLKKQLKSL---QAQEDARHRNTDQRSSENRRSEPWSLEER 206
S+ RS E+ + Q + + +S +++ +R ++ D+R R E R
Sbjct: 316 SVSRGRSQ------EKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSR 369
Query: 207 KREQWNSLKQNADQQDTEAMSDYKKQL------------RNLKEEIAVLSAEKSALQGRS 254
R + ++ ++D++A S KK+ R++ +E +E S +GR
Sbjct: 370 SRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRG 429
Query: 255 ----------------------------SRSRSPSPAP-RSRSCSRSRSASPSTAVKVRR 285
SRSRS S + RSRS SRSRSAS R
Sbjct: 430 ESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS-------RS 482
Query: 286 PSPNRSK 292
PS +RS+
Sbjct: 483 PSRSRSR 489
Score = 39.3 bits (90), Expect = 0.009
Identities = 56/266 (21%), Positives = 114/266 (42%), Gaps = 31/266 (11%)
Query: 60 AAAQEGGRNDGVETIKS-----RLLPWLEASFTAASLGKSVDSKVPSLQD-TFDRER-HK 112
A A +G +N+GV S R L L+ + + V+ K S + ++ R R H
Sbjct: 133 ADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHS 192
Query: 113 DPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKK 172
R R ++ S S++S ++ + ++ +S++RS + +E+ K
Sbjct: 193 RSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSK 252
Query: 173 QLKSLQAQEDARHRNTDQRSSENR-----------RSEPWSLEERKREQWNSLKQNADQQ 221
+ ++ + R+ + +E + P + + + + S ++ +++
Sbjct: 253 EKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEE 312
Query: 222 DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRS-SRSRSPSPAP-------RSRSCSRSR 273
++S + Q ++L++ S +S +G S SRSRS S + RSR SRSR
Sbjct: 313 KRGSVSRGRSQEKSLRQ-----SRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSR 367
Query: 274 SASPSTAVKVRRPSPNRSKLSNVARK 299
S S S + + R+ R + ++K
Sbjct: 368 SRSRSKSERSRKRGSKRDSKAGSSKK 393
Score = 36.6 bits (83), Expect = 0.060
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 11/178 (6%)
Query: 108 RERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEK-NLEESKNRSAISLLAAEEE 166
R R ++ S R + + +RS+ D + K + EES++RS S +E
Sbjct: 319 RGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSR-SRSKSERS 377
Query: 167 INQLKKQLKSLQAQEDARHRNTDQRSSEN------RRSEPWSLEERKREQWNSLKQNADQ 220
+ K+ + + + +TD+ S + + E E +RE +
Sbjct: 378 RKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTN 437
Query: 221 QDTEAMS-DYKKQLRNLKEEIAVLSAEKSALQGRS-SRSRSPSPAPRSRSCSRSRSAS 276
Q+T + S K NL E S S + RS SRSRS S +P SRS SRS S S
Sbjct: 438 QETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSP-SRSRSRSHSRS 494
>gi|169208018 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 595
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISL------LAAEEEINQLKKQL 174
M ++ + + + + Q + E E++L + KN+ A L + +E E+ L+K+L
Sbjct: 248 MSKMLQEICTLKKEKQQDMRRVEELERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKEL 307
Query: 175 KSLQAQEDARHRNTDQRSSENRRSEP---------WSLEERKREQWNSLKQNADQQ---- 221
+ + + ++ +N S NRR E EER +EQ L+Q A Q
Sbjct: 308 ERVAGELQSQVKNNQHISLLNRRQEERIREQEERLRKQEERLQEQHEKLRQLAKPQSVFE 367
Query: 222 ----DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP-SPAPRSRSCS 270
+ ++ ++Q++ L+E++ + +++ Q +R P +P P S S
Sbjct: 368 ELNNENKSTLQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 421
>gi|169208014 PREDICTED: Golgin subfamily A member 8-like protein 3
isoform 2 [Homo sapiens]
Length = 602
Score = 43.5 bits (101), Expect = 5e-04
Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 121 MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISL------LAAEEEINQLKKQL 174
M+++ + + + + Q + + E++L + KN+ A L + +E E+ L+K+L
Sbjct: 255 MRKMSQEICTLKKEKQQDMRRVEKLERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKEL 314
Query: 175 KSLQAQEDARHRNTDQRSSENRRSEP---------WSLEERKREQWNSLKQNADQQ---- 221
+ + + A+ +N + S N+R E EER +EQ SL+Q A Q
Sbjct: 315 ERVAGELQAQVKNNQRISLLNQRQEERIREQEERLRKQEERIQEQHKSLQQLAKPQSVFK 374
Query: 222 ----DTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSP-SPAPRSRSCS 270
+ + ++Q++ L+E++ + +++ Q +R P +P P S S
Sbjct: 375 EPNNENKNALQLEQQVKELQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSS 428
Score = 32.7 bits (73), Expect = 0.86
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)
Query: 157 AISLLAAEEEINQLKKQLKSL-QAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLK 215
A+ L + EI+QLK +KSL Q ++ H+ +++ + N++ + + E + + N K
Sbjct: 82 AVVLDSRSVEISQLKNTIKSLKQQKKQVEHQLEEEKKANNKKQKAKRVLEVQIQTLNIQK 141
Query: 216 QNADQQDTEAMSDYKKQLRNLKE---EIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRS 272
+ + + K+ LR +E ++AV +G S A + + ++
Sbjct: 142 EELNTD----LYHMKRSLRYFEEKSKDLAVRLQHSLQRKGELESVLSNVMATQKKKANQL 197
Query: 273 RSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSDSYSQARLD 316
S S K R + A L++F +S+ Q +L+
Sbjct: 198 SSRS-----KARTEWKLEQSMREEALLKVQLTQFKESFQQVQLE 236
>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo
sapiens]
Length = 1002
Score = 43.1 bits (100), Expect = 6e-04
Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 35/267 (13%)
Query: 3 ENLKRLVSNETLRTLQEKLDFWLKEYNTNTCDQNLNHCLELIEQVAKVQGQLFGILTAAA 62
E K SNE L+ + +L+ L+ T LN LE +++ ++ L ++
Sbjct: 299 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLN--LEELQKKLEMTELLLQQFSSRC 356
Query: 63 QEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQDTFDR--ERHKDPSPRDRD 120
+ N ++ E + A LG+ ++S V LQ D+ E K S R
Sbjct: 357 EAPDANQQLQQAME------ERAQLEAHLGQVMES-VRQLQMERDKYAENLKGESAMWRQ 409
Query: 121 -MQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAI--------------SLLAAEE 165
MQQ+ +++ R + + E E +L E +N+ A L AE
Sbjct: 410 RMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEA 469
Query: 166 EINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLE-ERKREQWNSLKQ------NA 218
E L+K+L+ L Q A+ ++ + S NR E LE ER E W +
Sbjct: 470 E--HLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILET 527
Query: 219 DQQDTEAMSDYKKQLRNLKEEIAVLSA 245
Q D +S Q R LKE++A L +
Sbjct: 528 MQNDRTTISRALSQNRELKEQLAELQS 554
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 43.1 bits (100), Expect = 6e-04
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 137 QVQDDLVETEKNLEESKNRSAISLLAAEEEIN-QLKKQLKSLQAQEDARHRNTDQRSSEN 195
+V+D E E+ +E ++ S L E+E + L K +ED+ + +++RS
Sbjct: 147 EVEDKESEGEEE-DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRS--- 202
Query: 196 RRSEPWSLEERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSS 255
RS+ S R + +S + + + + S Q R+ S E+S +G S
Sbjct: 203 -RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS-----SRERSRSRGSKS 256
Query: 256 RSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKAALLSRFSDS 309
RS S S S RS S+S S+ + R+ S +RS S +K SR +S
Sbjct: 257 RSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
Score = 38.9 bits (89), Expect = 0.012
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Query: 150 EESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSE------NRRSEPWSL 203
E+ + S +L A+EEE + KK + +++ + H + RSS RS S
Sbjct: 175 EDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSS 234
Query: 204 EERKREQWNSLKQNADQQDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPA 263
+ +S ++ + + +++ S + + S+ S+ + RSRS S +
Sbjct: 235 SSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSS 294
Query: 264 PRSRSCSRSRSASPSTAV 281
R R+RS SP + V
Sbjct: 295 SGDRKKRRTRSRSPESQV 312
Score = 35.4 bits (80), Expect = 0.13
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 44/210 (20%)
Query: 126 SNLN-STRSQCNQVQDDLVETEK--NLEES-------KNRSAISLLAAEE------EINQ 169
SN+N + RS+CN + T K LEE R + + EE E +
Sbjct: 75 SNVNWARRSECN-----MCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGR 129
Query: 170 LKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQDTEAMSDY 229
KK+ + + + + + SE EE + E + K + D+ + +A D
Sbjct: 130 KKKKYRGKAVGPASILKEVEDKESEGE-------EEDEDEDLSKYKLDEDEDEDDA--DL 180
Query: 230 KKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPN 289
K + EE E S + + RSRS S + SRS SRS S S S + R S +
Sbjct: 181 SKYNLDASEE------EDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS---RSRSRSRS 231
Query: 290 RSKLSNVAR-----KAALLSRFSDSYSQAR 314
RS S+ +R + SR S S S +R
Sbjct: 232 RSSSSSQSRSRSSSRERSRSRGSKSRSSSR 261
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 43.1 bits (100), Expect = 6e-04
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 22/214 (10%)
Query: 108 RERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRSAISLLAAEEEI 167
RER ++ R+R+ +Q + R + + + E E+ E K R E E
Sbjct: 402 RERERE---RERENRQRERERERERDRERERRQREREREREHERDKERQRRK---EEWER 455
Query: 168 NQLKKQLKSLQAQEDARHRNTD---QRSSENRRSEPWSLEERKREQWNSLKQNADQ---- 220
+ K+ ++D +HR+ D +R E + +P S + R+ K+ A
Sbjct: 456 ERAKRD------EKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQV 509
Query: 221 QDTEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTA 280
+ + D ++ ++ K+++ V + A + R + + S S + SRS SRS S S S +
Sbjct: 510 KRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGS 569
Query: 281 VKVRRPSPNRSKLSNVARKAALLSRFSDSYSQAR 314
+ R S S S+ + +++ S FS S S++R
Sbjct: 570 SRSRSRS---SSYSSYSSRSSRHSSFSGSRSRSR 600
Score = 40.8 bits (94), Expect = 0.003
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 16/186 (8%)
Query: 137 QVQDDLVETEKNLEESKNRSAISLLAAEEEINQLKKQLKSLQAQEDARHRNTDQRSSENR 196
+VQ E N E + E E + + + + + +E R R ++ R
Sbjct: 389 RVQYTETEPYHNYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQR 448
Query: 197 RSEPWSLEERKREQWNSLKQNADQQDTEAMSDYK----------KQLRNLKEEIAVLSAE 246
R E W E KR++ + ++ D++ K +Q K+E A +
Sbjct: 449 RKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQ 508
Query: 247 -KSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVKVRRPSPNRSKLSNVARKAALLSR 305
K A + + RS SP + S SPS A + R+ S + + SN +R ++ S
Sbjct: 509 VKRADEWKDPWRRSKSPKKK-----LGVSVSPSRARRRRKTSASSASASNSSRSSSRSSS 563
Query: 306 FSDSYS 311
+S S S
Sbjct: 564 YSGSGS 569
Score = 31.6 bits (70), Expect = 1.9
Identities = 44/185 (23%), Positives = 68/185 (36%), Gaps = 13/185 (7%)
Query: 107 DRERHKDPSPRDRDMQQLDSNLNSTRSQCNQVQDDLVETEKNLEESKNRS----AISLLA 162
D+ER + +R+ + D R + D E EK + K RS +
Sbjct: 443 DKERQRRKEEWERERAKRDEKDRQHRDR-----DREKEREKEKGKPKPRSPQPPSRQAEP 497
Query: 163 AEEEINQLKKQLKSLQAQEDARHRNTDQRSSENRRSEPWSLEERKREQWNSLKQNADQQD 222
++E Q+K +D R+ + P R++ +S + +
Sbjct: 498 PKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRS 557
Query: 223 TEAMSDYKKQLRNLKEEIAVLSAEKSALQGRSSRSRSPSPAPRSRSCSRSRSASPSTAVK 282
+ S Y + S+ S+ RSSR S S + RSRS S S S SPS
Sbjct: 558 SSRSSSYSGSGSSRSRS---RSSSYSSYSSRSSRHSSFSGS-RSRSRSFSSSPSPSPTPS 613
Query: 283 VRRPS 287
RPS
Sbjct: 614 PHRPS 618
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,087,851
Number of Sequences: 37866
Number of extensions: 832352
Number of successful extensions: 8426
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 702
Number of HSP's that attempted gapping in prelim test: 5820
Number of HSP's gapped (non-prelim): 2588
length of query: 538
length of database: 18,247,518
effective HSP length: 107
effective length of query: 431
effective length of database: 14,195,856
effective search space: 6118413936
effective search space used: 6118413936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.