Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD164 Sequence: fasta or formatted (178aa) NCBI GI: 215422423
Description:

CD164 molecule, sialomucin isoform 3

Referenced in:

Mucins

Other entries for this name:
alt prot [197aa] CD164 molecule, sialomucin isoform 1
alt prot [184aa] CD164 molecule, sialomucin isoform 2
alt prot [189aa] CD164 molecule, sialomucin isoform 4
alt prot [157aa] CD164 molecule, sialomucin isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           2
 C cysteine            6.2         11           1
 D aspartate           2.8          5           1
 E glutamate           2.8          5           1
 F phenylalanine       4.5          8           2
 G glycine             3.9          7           2
 H histidine           1.7          3           1
 I isoleucine          2.8          5           1
 K lysine              3.4          6           1
 L leucine             7.3         13           2
 M methionine          0.6          1           1
 N asparagine          6.7         12           2
 P proline             5.6         10           1
 Q glutamine           2.2          4           1
 R arginine            2.8          5           1
 S serine             11.8         21           1
 T threonine          14.6         26           2
 V valine             11.2         20           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD164 molecule, sialomucin isoform 3 
CD164                 0.968   CD164 molecule, sialomucin isoform 1 
CD164                 0.924   CD164 molecule, sialomucin isoform 2 
CD164                 0.830   CD164 molecule, sialomucin isoform 4 
CD164                 0.690   CD164 molecule, sialomucin isoform 5 
CD164L2               0.114   CD164 sialomucin-like 2 
TMEM123               0.064   transmembrane protein 123 precursor 
LOC100294420          0.047   PREDICTED: similar to mucin 2 
MUC2                  0.041   mucin 2 precursor 
MUC4                  0.035   mucin 4 isoform a 
KRTAP10-6             0.035   keratin associated protein 10-6 
LOC729815             0.032   PREDICTED: hypothetical protein 
LOC729815             0.032   PREDICTED: hypothetical protein 
MUC5AC                0.029   mucin 5AC 
MUC5B                 0.029   mucin 5, subtype B, tracheobronchial 
LOC100131514          0.029   PREDICTED: similar to hCG1747327, partial 
LOC100132635          0.029   PREDICTED: similar to mucin 5, partial 
MCAM                  0.029   melanoma cell adhesion molecule 
LOC730474             0.029   PREDICTED: hypothetical protein 
MUC6                  0.029   mucin 6, gastric 
MUC17                 0.026   mucin 17 
KRTAP10-10            0.026   keratin associated protein 10-10 
MEGF9                 0.023   multiple EGF-like-domains 9 
LOC100131251          0.023   PREDICTED: hypothetical protein 
LOC100131251          0.023   PREDICTED: hypothetical protein 
LOC728588             0.020   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.020   PREDICTED: similar to membrane-spanning 4-domains, ...
LOC728588             0.020   PREDICTED: similar to membrane-spanning 4-domains, ...
ANKHD1                0.018   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.018   ANKHD1-EIF4EBP3 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press