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Search of human proteins with 21389473
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389473 transmembrane protein 42 [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21389473 transmembrane protein 42 [Homo sapiens] 330 4e-91
gi|47827222 solute carrier family 35, member E4 [Homo sapiens] 30 0.67
gi|32479525 potassium voltage-gated channel, KQT-like subfamily,... 28 2.5
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 28 2.5
gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo s... 28 3.3
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 28 3.3
gi|40255283 NHL repeat containing 1 [Homo sapiens] 28 4.3
gi|24431939 DnaJ (Hsp40) homolog, subfamily C, member 22 [Homo s... 28 4.3
gi|110832839 ATP-binding cassette, sub-family C, member 9 isofor... 27 5.6
gi|110832835 ATP-binding cassette, sub-family C, member 9 isofor... 27 5.6
gi|110832837 ATP-binding cassette, sub-family C, member 9 isofor... 27 5.6
gi|28558982 thyroid peroxidase isoform a [Homo sapiens] 27 5.6
gi|28558984 thyroid peroxidase isoform b [Homo sapiens] 27 5.6
gi|28558990 thyroid peroxidase isoform e [Homo sapiens] 27 5.6
gi|46309463 vitamin K epoxide reductase complex, subunit 1-like ... 27 5.6
gi|50233862 olfactory receptor, family 5, subfamily D, member 13... 27 5.6
gi|13376097 NIPA-like domain containing 2 [Homo sapiens] 27 7.4
gi|5453621 solute carrier family 35 (CMP-sialic acid transporter... 27 7.4
gi|27436867 slit and trk like 4 protein [Homo sapiens] 27 7.4
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 27 9.6
gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens] 27 9.6
gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens] 27 9.6
gi|188595682 ankyrin 2 isoform 3 [Homo sapiens] 27 9.6
gi|52426737 ankyrin 2 isoform 2 [Homo sapiens] 27 9.6
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 27 9.6
gi|4508021 zinc finger protein 259 [Homo sapiens] 27 9.6
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens] 27 9.6
>gi|21389473 transmembrane protein 42 [Homo sapiens]
Length = 159
Score = 330 bits (845), Expect = 4e-91
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MAERPGPPGGAVSATAYPDTPAEFPPHLQAGAMRRRFWGVFNCLCAGAFGALAAASAKLA 60
MAERPGPPGGAVSATAYPDTPAEFPPHLQAGAMRRRFWGVFNCLCAGAFGALAAASAKLA
Sbjct: 1 MAERPGPPGGAVSATAYPDTPAEFPPHLQAGAMRRRFWGVFNCLCAGAFGALAAASAKLA 60
Query: 61 FGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVL 120
FGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVL
Sbjct: 61 FGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVL 120
Query: 121 YGECQEVLWWGGVFLILCGLTLIHRKLPPTWKPLPHKQQ 159
YGECQEVLWWGGVFLILCGLTLIHRKLPPTWKPLPHKQQ
Sbjct: 121 YGECQEVLWWGGVFLILCGLTLIHRKLPPTWKPLPHKQQ 159
>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
Length = 350
Score = 30.4 bits (67), Expect = 0.67
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 43 CLCAGAFGALAAASAKLAFGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIAS 102
CL AGA L A A + + C+L ++ S+++ S L +++SA+
Sbjct: 230 CLLAGAALVLEAGVAPPPTAGDSRLWACIL----LSCLLSVLYNLASFSL-LALTSALTV 284
Query: 103 VTVTFSNILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLIH 144
+ ++ + L +L+G L + G+ L L G+ L H
Sbjct: 285 HVLGNLTVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYH 326
>gi|32479525 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 2 [Homo sapiens]
Length = 549
Score = 28.5 bits (62), Expect = 2.5
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 44 LCAGAFGALAAASAKLAFGSEVSMGLCVLGIIVMASTNSL--MWTFFSRGLSFSMSSAIA 101
LC G+ G + A SA G+ L I+ M + W + I
Sbjct: 86 LCVGSKGQVFATSA--------IRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELIT 137
Query: 102 SVTVTFSNILSSAFLGY------------VLYGECQEVLWWGGVFLILCGLTLIHRKLPP 149
++ + F ++ S++ Y V +G + LWWG V + G K+P
Sbjct: 138 TLYIGFLGLIFSSYFVYLAEKDAVNESGRVEFGSYADALWWGVVTVTTIG---YGDKVPQ 194
Query: 150 TW 151
TW
Sbjct: 195 TW 196
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 28.5 bits (62), Expect = 2.5
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 44 LCAGAFGALAAASAKLAFGSEVSMGLCVLGIIVMASTNSL--MWTFFSRGLSFSMSSAIA 101
LC G+ G + A SA G+ L I+ M + W + I
Sbjct: 213 LCVGSKGQVFATSA--------IRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELIT 264
Query: 102 SVTVTFSNILSSAFLGY------------VLYGECQEVLWWGGVFLILCGLTLIHRKLPP 149
++ + F ++ S++ Y V +G + LWWG V + G K+P
Sbjct: 265 TLYIGFLGLIFSSYFVYLAEKDAVNESGRVEFGSYADALWWGVVTVTTIG---YGDKVPQ 321
Query: 150 TW 151
TW
Sbjct: 322 TW 323
>gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo
sapiens]
Length = 368
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 61 FGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVT-VTFSNILSSAFLGYV 119
F E + LC I+ + + + GLSF SS I + T + +IL+ A L
Sbjct: 272 FSVEDTYLLCPAPILKEVGMKAALQVSMNDGLSFISSSVIITTTHCSDGSILAIALLILF 331
Query: 120 LYGECQEVLWWGGVFLILCGLTLIHRKLPP 149
L +LWW F LC T+I +++PP
Sbjct: 332 LL-LALALLWW---FWPLC-CTVIIKEVPP 356
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 61 FGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVT-VTFSNILSSAFLGYV 119
F E + LC I+ + + + GLSF SS I + T + +IL+ A L
Sbjct: 272 FSVEDTYLLCPAPILKEVGMKAALQVSMNDGLSFISSSVIITTTHCSDGSILAIALLILF 331
Query: 120 LYGECQEVLWWGGVFLILCGLTLIHRKLPP 149
L +LWW F LC T+I +++PP
Sbjct: 332 LL-LALALLWW---FWPLC-CTVIIKEVPP 356
>gi|40255283 NHL repeat containing 1 [Homo sapiens]
Length = 395
Score = 27.7 bits (60), Expect = 4.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 50 GALAAASAKLAFGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSN 109
GA+A LA G+ G+C + V +S+ L+ + GLS S I + VTF +
Sbjct: 274 GAIAVLEHPLALGT----GVCSTRVKVFSSSMQLVGQVDTFGLSLYFPSKITASAVTFDH 329
>gi|24431939 DnaJ (Hsp40) homolog, subfamily C, member 22 [Homo
sapiens]
Length = 341
Score = 27.7 bits (60), Expect = 4.3
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 59 LAFGSEVSMGLCVLGIIVMASTNSLMWTFF-----SRGLSFSMSSAIASVTVTFSNILSS 113
+ F ++V +G+ G++ + S +S++ + + GL + +A+ + T F N L S
Sbjct: 79 IRFAAQVIVGI-YFGLVALISLSSMVNFYIVALPLAVGLGVLLVAAVGNQTSDFKNTLGS 137
Query: 114 AFL-GYVLYG 122
AFL + YG
Sbjct: 138 AFLTSPIFYG 147
>gi|110832839 ATP-binding cassette, sub-family C, member 9 isoform
SUR2A-delta-14 [Homo sapiens]
Length = 1513
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 63 SEVSMGLCVLGII---VMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFL 116
S +SMG LG I V TN LMW F ++M I + N+L S+ L
Sbjct: 401 SNLSMGEMTLGQINNLVAIETNQLMWFLFLCPNLWAMPVQIIMGVILLYNLLGSSAL 457
>gi|110832835 ATP-binding cassette, sub-family C, member 9 isoform
SUR2A [Homo sapiens]
Length = 1549
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 63 SEVSMGLCVLGII---VMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFL 116
S +SMG LG I V TN LMW F ++M I + N+L S+ L
Sbjct: 401 SNLSMGEMTLGQINNLVAIETNQLMWFLFLCPNLWAMPVQIIMGVILLYNLLGSSAL 457
>gi|110832837 ATP-binding cassette, sub-family C, member 9 isoform
SUR2B [Homo sapiens]
Length = 1549
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 63 SEVSMGLCVLGII---VMASTNSLMWTFFSRGLSFSMSSAIASVTVTFSNILSSAFL 116
S +SMG LG I V TN LMW F ++M I + N+L S+ L
Sbjct: 401 SNLSMGEMTLGQINNLVAIETNQLMWFLFLCPNLWAMPVQIIMGVILLYNLLGSSAL 457
>gi|28558982 thyroid peroxidase isoform a [Homo sapiens]
Length = 933
Score = 27.3 bits (59), Expect = 5.6
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 26 PHLQAGAMRRRFWGVFNCLCA-----GAFGALAAASAKLAFGSEVSMGLCVL---GIIVM 77
P A A R G F CLCA G G S +L + +SM L L G +
Sbjct: 806 PPCHASARCRNTKGGFQCLCADPYELGDDGRTCVDSGRLPRVTWISMSLAALLIGGFAGL 865
Query: 78 ASTNSLMWT 86
ST WT
Sbjct: 866 TSTVICRWT 874
>gi|28558984 thyroid peroxidase isoform b [Homo sapiens]
Length = 876
Score = 27.3 bits (59), Expect = 5.6
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 26 PHLQAGAMRRRFWGVFNCLCA-----GAFGALAAASAKLAFGSEVSMGLCVL---GIIVM 77
P A A R G F CLCA G G S +L + +SM L L G +
Sbjct: 749 PPCHASARCRNTKGGFQCLCADPYELGDDGRTCVDSGRLPRVTWISMSLAALLIGGFAGL 808
Query: 78 ASTNSLMWT 86
ST WT
Sbjct: 809 TSTVICRWT 817
>gi|28558990 thyroid peroxidase isoform e [Homo sapiens]
Length = 760
Score = 27.3 bits (59), Expect = 5.6
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 26 PHLQAGAMRRRFWGVFNCLCA-----GAFGALAAASAKLAFGSEVSMGLCVL---GIIVM 77
P A A R G F CLCA G G S +L + +SM L L G +
Sbjct: 633 PPCHASARCRNTKGGFQCLCADPYELGDDGRTCVDSGRLPRVTWISMSLAALLIGGFAGL 692
Query: 78 ASTNSLMWT 86
ST WT
Sbjct: 693 TSTVICRWT 701
>gi|46309463 vitamin K epoxide reductase complex, subunit 1-like 1
[Homo sapiens]
Length = 176
Score = 27.3 bits (59), Expect = 5.6
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 60 AFGSEVSMGLCVLGII-----VMASTNSLMWTFFS-----RGLSFSMSSAIASVTVTFSN 109
A S G +LG I V+ NS+ F G++ S +A+ +T + +
Sbjct: 61 ALASRWGRGFGLLGSIFGKDGVLNQPNSVFGLIFYILQLLLGMTASAVAALILMTSSIMS 120
Query: 110 ILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLI 143
++ S +L Y+LY +E F I+C +T +
Sbjct: 121 VVGSLYLAYILYFVLKE-------FCIICIVTYV 147
>gi|50233862 olfactory receptor, family 5, subfamily D, member 13
[Homo sapiens]
Length = 314
Score = 27.3 bits (59), Expect = 5.6
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 44 LCAGAFGALAAASAKLAFGSEVSMGLCVL---GIIVMASTNSLMWTFFSRGLSFSMSSAI 100
L A A+ A L + + +S LC L G SL+ T+F LSF S+ I
Sbjct: 117 LAAMAYDRFVAVCKPLLYTTIMSQKLCALLVAGSYTWGIVCSLILTYFLLDLSFCESTFI 176
Query: 101 ASVTVTFSNILSSAF 115
+ S I+S+++
Sbjct: 177 NNFICDHSVIVSASY 191
>gi|13376097 NIPA-like domain containing 2 [Homo sapiens]
Length = 368
Score = 26.9 bits (58), Expect = 7.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 125 QEVLWWGGVFLILCGLT 141
+ VLWWGGV L+ G T
Sbjct: 86 KSVLWWGGVLLMAVGET 102
>gi|5453621 solute carrier family 35 (CMP-sialic acid transporter),
member A1 [Homo sapiens]
Length = 337
Score = 26.9 bits (58), Expect = 7.4
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 47 GAFGALAAASAKLAFGSEVSMGLCVLGIIVMASTNSLMWTFFSRGLSFSMSSAIASVTVT 106
G+ G A+ + GS + + +V A N++ + S ++ +A+ VT
Sbjct: 68 GSLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALS-----NLDAAVYQVTYQ 122
Query: 107 FSNILSSAFLGYVLYGECQEVLWWGGVFLILCGLTLIHRKLPPTWKP 153
I +A ++ L W VF++ G+TL+ WKP
Sbjct: 123 LK-IPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQ------WKP 162
>gi|27436867 slit and trk like 4 protein [Homo sapiens]
Length = 837
Score = 26.9 bits (58), Expect = 7.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 84 MWTFFSRGLSFSMSSAIASVTVTFSNILSSAFLGYVLYGECQEV 127
+W F S ++A + ++V N+ S + VLY C++V
Sbjct: 3 LWLFLILSALISSTNADSDISVEICNVCSCVSVENVLYVNCEKV 46
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 26.6 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 4 RPGPPGGAVSATAYPDTPAEFPPHLQAGAM 33
RPG G + +YP+ P P H GAM
Sbjct: 414 RPGSAGIPMEVGSYPNMPHPQPSHQPPGAM 443
>gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens]
Length = 765
Score = 26.6 bits (57), Expect = 9.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 8 PGGAVSATAYPDTPAEFPPHLQAGAMRRRFW 38
PG AV A P++P PP G R W
Sbjct: 730 PGEAVPAPTPPESPTPHPPPAAPGGERAGTW 760
>gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens]
Length = 766
Score = 26.6 bits (57), Expect = 9.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 8 PGGAVSATAYPDTPAEFPPHLQAGAMRRRFW 38
PG AV A P++P PP G R W
Sbjct: 731 PGEAVPAPTPPESPTPHPPPAAPGGERAGTW 761
>gi|188595682 ankyrin 2 isoform 3 [Homo sapiens]
Length = 1863
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 6 GPPGGAVSATAYPDTPAEFPPHLQAGAMRRR 36
GP GG +S+T P A FP GA+ +R
Sbjct: 1156 GPEGGVLSSTVVPQVQAVFP----EGALTKR 1182
>gi|52426737 ankyrin 2 isoform 2 [Homo sapiens]
Length = 1872
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 6 GPPGGAVSATAYPDTPAEFPPHLQAGAMRRR 36
GP GG +S+T P A FP GA+ +R
Sbjct: 1165 GPEGGVLSSTVVPQVQAVFP----EGALTKR 1191
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 6 GPPGGAVSATAYPDTPAEFPPHLQAGAMRRR 36
GP GG +S+T P A FP GA+ +R
Sbjct: 1165 GPEGGVLSSTVVPQVQAVFP----EGALTKR 1191
>gi|4508021 zinc finger protein 259 [Homo sapiens]
Length = 459
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 2 AERPGPPGGAVSATAYPDTPAEFPPHL 28
A PGPPG AV+ + P P P HL
Sbjct: 6 AVEPGPPGAAVAPSPAP-APPPAPDHL 31
>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
Length = 572
Score = 26.6 bits (57), Expect = 9.6
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 PPGGAVSATAYPDTPAEFP--PHLQAGAMRRR 36
PPG ++ TA PD E P P +QA RR
Sbjct: 457 PPGAPLALTALPDPDPEPPGTPEMQAPVASRR 488
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,739,102
Number of Sequences: 37866
Number of extensions: 272164
Number of successful extensions: 1341
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 29
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.