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Search of human proteins with 21389389
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389389 SLAIN motif family, member 1 B [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93141208 SLAIN motif family, member 1 A [Homo sapiens] 618 e-177
gi|21389389 SLAIN motif family, member 1 B [Homo sapiens] 618 e-177
gi|149588928 SLAIN motif family, member 2 [Homo sapiens] 154 9e-38
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 38 0.013
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 35 0.063
gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens] 35 0.063
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens] 35 0.063
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 35 0.083
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 35 0.11
gi|16975496 cortactin binding protein 2 [Homo sapiens] 35 0.11
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 34 0.14
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 34 0.18
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 34 0.18
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 34 0.18
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.18
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 33 0.24
gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens] 33 0.24
gi|223941891 protein tyrosine phosphatase, non-receptor type 3 i... 33 0.31
gi|223941888 protein tyrosine phosphatase, non-receptor type 3 i... 33 0.31
gi|223941885 protein tyrosine phosphatase, non-receptor type 3 i... 33 0.31
gi|223941882 protein tyrosine phosphatase, non-receptor type 3 i... 33 0.31
gi|223941879 protein tyrosine phosphatase, non-receptor type 3 i... 33 0.31
gi|223941876 protein tyrosine phosphatase, non-receptor type 3 i... 33 0.31
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 33 0.41
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 33 0.41
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens] 33 0.41
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 33 0.41
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 33 0.41
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 33 0.41
gi|120953251 neuron navigator 3 [Homo sapiens] 33 0.41
>gi|93141208 SLAIN motif family, member 1 A [Homo sapiens]
Length = 349
Score = 618 bits (1593), Expect = e-177
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL 60
MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL
Sbjct: 45 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL 104
Query: 61 EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP 120
EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP
Sbjct: 105 EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP 164
Query: 121 QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI 180
QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI
Sbjct: 165 QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI 224
Query: 181 SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG 240
SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG
Sbjct: 225 SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG 284
Query: 241 IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW 300
IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW
Sbjct: 285 IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW 344
Query: 301 RDGCY 305
RDGCY
Sbjct: 345 RDGCY 349
>gi|21389389 SLAIN motif family, member 1 B [Homo sapiens]
Length = 305
Score = 618 bits (1593), Expect = e-177
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL 60
MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL
Sbjct: 1 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL 60
Query: 61 EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP 120
EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP
Sbjct: 61 EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP 120
Query: 121 QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI 180
QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI
Sbjct: 121 QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI 180
Query: 181 SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG 240
SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG
Sbjct: 181 SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG 240
Query: 241 IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW 300
IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW
Sbjct: 241 IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW 300
Query: 301 RDGCY 305
RDGCY
Sbjct: 301 RDGCY 305
>gi|149588928 SLAIN motif family, member 2 [Homo sapiens]
Length = 581
Score = 154 bits (389), Expect = 9e-38
Identities = 129/336 (38%), Positives = 169/336 (50%), Gaps = 57/336 (16%)
Query: 3 YKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
YKL D+TDVQI+AR+QEESLRQ+YA+T+ SR SS S +S ++GT SDQE D SL+D
Sbjct: 270 YKLNDVTDVQILARMQEESLRQEYAATT---SRRSSGSSCNSTRRGTFSDQELDAQSLDD 326
Query: 63 EEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSS----QYF-----PSNNYQ 113
E++ H P + R SP R P S R RS S +Y P +
Sbjct: 327 EDDNMH-HAVYPAVNRFSPSPRNSPRPSPKQSPRNSPRSRSPARGIEYSRVSPQPMISRL 385
Query: 114 QQQYYSPQAQTPD-QQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSS 172
QQ S Q D Q N N +KLRRS+PNL+R +T S V++S+S DS+
Sbjct: 386 QQPRLSLQGHPTDLQTSNVKNEEKLRRSLPNLSRTSNTQVDS--------VKSSRS-DSN 436
Query: 173 LHGAGNGISRIQ---SCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPL 229
GI R+Q S IPSPG+ + P+++RQP+KA + GS +
Sbjct: 437 FQVPNGGIPRMQPQASAIPSPGKFR---SPAAPSPLALRQPVKAFSNHGSGSPGSQEI-- 491
Query: 230 SNGLQLYSNTGIPTP---------------NKAAASGIMG----RSALPRPSL-AINGSN 269
QL T P P N A + G RS LPRPS + G
Sbjct: 492 ---TQLTQTTSSPGPPMVQSTVSANPPSNINSATLTRPAGTTAMRSGLPRPSAPSAGGIP 548
Query: 270 LPRSKIAQPVRSFLQPPKPLSSLSTLRDGNWRDGCY 305
+PRSK+AQPVR L PK S ++D +W+DGCY
Sbjct: 549 VPRSKLAQPVRRSLPAPKTYGS---MKDDSWKDGCY 581
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 37.7 bits (86), Expect = 0.013
Identities = 66/292 (22%), Positives = 106/292 (36%), Gaps = 53/292 (18%)
Query: 35 RHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSS 94
RH S SS G + Q DQ +++ PPQP P P Q H Q S
Sbjct: 133 RHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQP-APSGPPAQGHPQHMQQMGS 191
Query: 95 IRECRRSPSSQYFPSNNYQQQQYYSPQ----------------------------AQTPD 126
Y ++ QQ+ PQ + P
Sbjct: 192 -----------YMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ 240
Query: 127 QQPNRTNGDKLRRSMPNLARMPSTTAISSNIS-SPVTVRNSQSFDSSLHGAGNGISRIQS 185
Q P+ LR S+ PST +++ SP N + N SR Q+
Sbjct: 241 QSPSM--APSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQT 298
Query: 186 CIPSPGQLQHRVHSVGHFPVS-IRQPLKATAYVSPTVQGSSNMPLSNGLQLYSN-TGIPT 243
+PSP +S +P S + Q L ++ + ++N P++ + Y N G P+
Sbjct: 299 -VPSPTINNSGQYS--RYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPS 355
Query: 244 PNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTL 295
+ G+M + + PS ++N N +QP ++ PP P+S + +
Sbjct: 356 ---NSGQGLMHQQPI-HPSGSLNQMNTQTMHPSQPQGTYASPP-PMSPMKAM 402
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 35.4 bits (80), Expect = 0.063
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 69 LPPPQPRLPRCSPFQRGIPH----SQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQT 124
LPPPQP P CSP + SQ I SPS P Q+ + T
Sbjct: 139 LPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLPLPALIQEG--RSTSVT 196
Query: 125 PDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ 184
D+ ++ N ++ MP+L + ST ++S+ P +R+ + H + I+
Sbjct: 197 NDKLTSKMNAEEDSEEMPSL--LTSTVQVASDNLIP-QIRDKEDPQEMPHSPLGSMPEIR 253
Query: 185 SCIPSP 190
P P
Sbjct: 254 DNSPEP 259
>gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]
Length = 549
Score = 35.4 bits (80), Expect = 0.063
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 69 LPPPQPRLPRCSPFQRGIPH----SQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQT 124
LPPPQP P CSP + SQ I SPS P Q+ + T
Sbjct: 139 LPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLPLPALIQEG--RSTSVT 196
Query: 125 PDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ 184
D+ ++ N ++ MP+L + ST ++S+ P +R+ + H + I+
Sbjct: 197 NDKLTSKMNAEEDSEEMPSL--LTSTVQVASDNLIP-QIRDKEDPQEMPHSPLGSMPEIR 253
Query: 185 SCIPSP 190
P P
Sbjct: 254 DNSPEP 259
>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
Length = 713
Score = 35.4 bits (80), Expect = 0.063
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 69 LPPPQPRLPRCSPFQRGIPH----SQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQT 124
LPPPQP P CSP + SQ I SPS P Q+ + T
Sbjct: 139 LPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLPLPALIQEG--RSTSVT 196
Query: 125 PDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ 184
D+ ++ N ++ MP+L + ST ++S+ P +R+ + H + I+
Sbjct: 197 NDKLTSKMNAEEDSEEMPSL--LTSTVQVASDNLIP-QIRDKEDPQEMPHSPLGSMPEIR 253
Query: 185 SCIPSP 190
P P
Sbjct: 254 DNSPEP 259
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 35.0 bits (79), Expect = 0.083
Identities = 55/244 (22%), Positives = 88/244 (36%), Gaps = 21/244 (8%)
Query: 34 SRHSSSVSLSSGKKGTCSDQEYDQ-YSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTF 92
SR SS +SL +GKK E + ++ E+ L +P P + + S+
Sbjct: 431 SRRSSLLSLMTGKKDVAKGSEGENPLTVPGREKEGMLMGVKPGEDASGPAEDLVRRSEKD 490
Query: 93 SSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNL-------- 144
++ R+ S F + + P + + R P L
Sbjct: 491 TAAVVSRQGSSLNLFEDVQITEPEAEPESKSEPRPPISSPRAPQTRAVKPRLEVSPEAQP 550
Query: 145 -ARMPSTTAISSNISSPVTVRNSQSFDSSL-HGAGNGISRIQSCIPSPGQLQHRVHSVGH 202
AR+PS T S++ + S S L HGA S S S + S
Sbjct: 551 TARLPSPTDSPSSLPPLPSSSGQASVPSELGHGADTQSSESPSVFSS-------LSSPIA 603
Query: 203 FPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPS 262
P+S P+++ V S PL +L + + P PN + S ++G S +PS
Sbjct: 604 APISTSTPIESWPLVDRGQAKSEGPPLLPKAELQTESLTPVPN--SGSSVLG-SLFKQPS 660
Query: 263 LAIN 266
N
Sbjct: 661 FPAN 664
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 34.7 bits (78), Expect = 0.11
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVS-LSSGKKGTCSDQEYDQYS 59
M L ++ + ++ L+EE ++ A+TS+S SSSVS ++ ++E ++
Sbjct: 1 MSILLPNMAEFDTISELEEEE--EEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEE 58
Query: 60 LEDEEEFDHLPPPQPRL 76
E+EEE + PP PR+
Sbjct: 59 EEEEEEEEEEAPPPPRV 75
>gi|16975496 cortactin binding protein 2 [Homo sapiens]
Length = 1663
Score = 34.7 bits (78), Expect = 0.11
Identities = 56/212 (26%), Positives = 71/212 (33%), Gaps = 53/212 (25%)
Query: 118 YSPQAQTPDQQPNRTNGDKLRRSMPN---------LARMPSTTAISSNISSPVTVRNSQS 168
+ A PDQ N T R P LAR T A+S +SP S+
Sbjct: 452 FQGNANDPDQNGNTTQSPPSRDVSPTSRDNLVAKQLARNTVTQALS-RFTSPQAGAPSRP 510
Query: 169 FDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMP 228
G P G+ + H V P + P G S P
Sbjct: 511 GVPPTGDVGTH--------PPVGRTSLKTHGVARVDRGNPPP------IPPKKPGLSQTP 556
Query: 229 LSNGLQLY--------SNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVR 280
QL SNTG NK AS S+LP+ + IN NLP+S Q
Sbjct: 557 SPPHPQLKVIIDSSRASNTGAKVDNKTVAST---PSSLPQGNRVINEENLPKSSSPQ--- 610
Query: 281 SFLQPPKP------------LSSLSTLRDGNW 300
PPKP +S+L+T + G W
Sbjct: 611 ---LPPKPSIDLTVAPAGCAVSALATSQVGAW 639
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2
[Homo sapiens]
Length = 1461
Score = 34.3 bits (77), Expect = 0.14
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 140 SMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLH---GAGNGISRIQSCIPSPGQLQHR 196
++PNLA + ISS +SS +V + + G S + S + +P
Sbjct: 444 ALPNLANV-DLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPSNLTSGLKTPAPATTT 502
Query: 197 VHS--------VGHFPVSIRQPLKATAYVS-PTVQGSSNMPLSNGLQLYSNTGIPTPNKA 247
H+ V P SI L T S P +QG S++ L S TG P P
Sbjct: 503 SHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSL-------LQSVTGNPVPASE 555
Query: 248 AASGIMGRSALPRPSLAINGSNLPRSKIAQPV--RSFLQPPKPLSS 291
AAS S I G NLP S AQP +SF P +S
Sbjct: 556 AASQSTSASPANTTVSTIKGRNLPSS--AQPFIPKSFNYSPNSSTS 599
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 33.9 bits (76), Expect = 0.18
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 31/167 (18%)
Query: 73 QPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRT 132
+P + + P S S+ +R+ ++ P QQQQ PQ Q P QQP
Sbjct: 60 KPSVSQPQPANSNNGTSTATSTNNNAKRATANNQQPQQQQQQQQ---PQQQQPQQQPQPQ 116
Query: 133 NGDKLRRSMPN-LARMPSTT--------------------AISSNISSPVTVRNSQSFDS 171
+ + P L R P I++N+ S V V NSQS S
Sbjct: 117 PQQQQPQQQPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESS 176
Query: 172 SL---HGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATA 215
+L NG +Q+ + + H S H+ S R P+ +T+
Sbjct: 177 ALTNQQPQNNG--EVQNS-KNQSDINHST-SGSHYENSQRGPVSSTS 219
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 33.9 bits (76), Expect = 0.18
Identities = 66/265 (24%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 53 QEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGI---PHSQTFSSIRECRRSPS---SQY 106
Q+ YS + + H P + P+ P Q P+SQ S ++SP+ SQ
Sbjct: 480 QQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPH-QQSPAPYPSQQ 538
Query: 107 FPSNNYQQQQ--YYSPQAQTP--DQQPNRTNGDKLRRSM---PNLARMPSTTAISSNISS 159
+ + Q Q Y PQAQ+P QQP + L + ++ TA S
Sbjct: 539 STTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFP 598
Query: 160 PVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQ-PLKATAYVS 218
P + SF S A + S LQ R S+ SI P+ +S
Sbjct: 599 PPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALS 658
Query: 219 PTV--------QGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALP--RPSLAINGS 268
P V QG + P + +++ +P GI G S P P+
Sbjct: 659 PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLP--------GIRGPSPSPVGSPASVAQSR 710
Query: 269 NLPRSKIAQPVRSFLQPPKPLSSLS 293
+ P S A P PP+P S S
Sbjct: 711 SGPLSPAAVPGNQ--MPPRPPSGQS 733
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 33.9 bits (76), Expect = 0.18
Identities = 66/265 (24%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 53 QEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGI---PHSQTFSSIRECRRSPS---SQY 106
Q+ YS + + H P + P+ P Q P+SQ S ++SP+ SQ
Sbjct: 480 QQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPH-QQSPAPYPSQQ 538
Query: 107 FPSNNYQQQQ--YYSPQAQTP--DQQPNRTNGDKLRRSM---PNLARMPSTTAISSNISS 159
+ + Q Q Y PQAQ+P QQP + L + ++ TA S
Sbjct: 539 STTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFP 598
Query: 160 PVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQ-PLKATAYVS 218
P + SF S A + S LQ R S+ SI P+ +S
Sbjct: 599 PPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALS 658
Query: 219 PTV--------QGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALP--RPSLAINGS 268
P V QG + P + +++ +P GI G S P P+
Sbjct: 659 PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLP--------GIRGPSPSPVGSPASVAQSR 710
Query: 269 NLPRSKIAQPVRSFLQPPKPLSSLS 293
+ P S A P PP+P S S
Sbjct: 711 SGPLSPAAVPGNQ--MPPRPPSGQS 733
Score = 29.6 bits (65), Expect = 3.5
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 70 PPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNN---YQQQQYYSPQAQTPD 126
PP Q + + QR + FS+ + +PS FPS YQQQQ S A P
Sbjct: 1325 PPQQQQQQQ----QRHDSYGNQFST----QGTPSGSPFPSQQTTMYQQQQQVSSPAPLPR 1376
Query: 127 QQPNRTNGDK 136
NRT+ K
Sbjct: 1377 PMENRTSPSK 1386
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 27 ASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGI 86
+S+S+S S SSS S SS + SD E ++ E +P P P P+ + G
Sbjct: 2537 SSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP-APK-EAVREGR 2594
Query: 87 PHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLAR 146
P T + R+ R S SS S++ S + + + ++ S P+ A+
Sbjct: 2595 PPEPT-PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAK 2653
Query: 147 MPSTTAI---SSNISSPVTVRNSQS----FDSSLHGAGNGISRIQSCIPSP 190
P A+ +S P R S+S DS S ++ PSP
Sbjct: 2654 -PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP 2703
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 31 ASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQ 90
A++ SS S +K + SDQ YS + + P + R R + R S+
Sbjct: 653 ANIKETGSSSSYHKREKNSESDQS--TYSKYSDRSSESSPRSRSRSSRSRSYSRSYTRSR 710
Query: 91 TFSSIRECRRSPSSQYFPSNNYQQQQYYS 119
+ +S RSPSS+ N Y S
Sbjct: 711 SLASSHSRSRSPSSRSHSRNKYSDHSQCS 739
>gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens]
Length = 1219
Score = 33.5 bits (75), Expect = 0.24
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 52 DQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNN 111
+QE ++ S E+EEE P +P + + G P + R P S PS
Sbjct: 933 EQEKEESSSEEEEEKAEERPRRPSQEQSASASSGQPQAPL------NRERPESPMVPSEQ 986
Query: 112 YQQQQY-YSPQAQTPDQQPNRTNGDKLRRSM---------PNLARMPSTTAISSNISSPV 161
++ PQA T Q +R GD ++ P L+ +PS + S P
Sbjct: 987 VVEEAVPLPPQALTTSQDGHRRKGDSEAEALSEIKDGSLPPELSCIPSHRVLGPPTSIPP 1046
Query: 162 TVRNSQSFDS 171
S DS
Sbjct: 1047 EPLGPVSMDS 1056
>gi|223941891 protein tyrosine phosphatase, non-receptor type 3
isoform 6 [Homo sapiens]
Length = 581
Score = 33.1 bits (74), Expect = 0.31
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 EESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
+ESL ++ + S + SSSVS SS G+CS DQ L+D
Sbjct: 105 QESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 148
>gi|223941888 protein tyrosine phosphatase, non-receptor type 3
isoform 5 [Homo sapiens]
Length = 626
Score = 33.1 bits (74), Expect = 0.31
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 EESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
+ESL ++ + S + SSSVS SS G+CS DQ L+D
Sbjct: 150 QESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 193
>gi|223941885 protein tyrosine phosphatase, non-receptor type 3
isoform 4 [Homo sapiens]
Length = 737
Score = 33.1 bits (74), Expect = 0.31
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 EESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
+ESL ++ + S + SSSVS SS G+CS DQ L+D
Sbjct: 261 QESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 304
>gi|223941882 protein tyrosine phosphatase, non-receptor type 3
isoform 3 [Homo sapiens]
Length = 782
Score = 33.1 bits (74), Expect = 0.31
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 EESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
+ESL ++ + S + SSSVS SS G+CS DQ L+D
Sbjct: 306 QESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 349
>gi|223941879 protein tyrosine phosphatase, non-receptor type 3
isoform 2 [Homo sapiens]
Length = 868
Score = 33.1 bits (74), Expect = 0.31
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 EESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
+ESL ++ + S + SSSVS SS G+CS DQ L+D
Sbjct: 392 QESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 435
>gi|223941876 protein tyrosine phosphatase, non-receptor type 3
isoform 1 [Homo sapiens]
Length = 913
Score = 33.1 bits (74), Expect = 0.31
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 19 EESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 62
+ESL ++ + S + SSSVS SS G+CS DQ L+D
Sbjct: 437 QESLSENNPAQSYLTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 480
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 32.7 bits (73), Expect = 0.41
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 35/205 (17%)
Query: 87 PHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLAR 146
P +TF + SP P+ N + SP + TP + N G +R +
Sbjct: 112 PRRETFV----LKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGS-VRALRATSGK 166
Query: 147 MPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVS 206
PS S + F +S A + ++R S ++ R G S
Sbjct: 167 RPSNMKRESPTCN--------LFPASKSPASSPLTR------STPPVRGRAGPSGRAAAS 212
Query: 207 IRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAIN 266
P+++ P+ S +P G S++ +P P SA+PRP+
Sbjct: 213 PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----------SAIPRPA---- 257
Query: 267 GSNLPRSKIAQPVRSFLQPPKPLSS 291
S +P + + P PP LS+
Sbjct: 258 -SRMPLTSRSVPPGRGALPPDSLST 281
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 32.7 bits (73), Expect = 0.41
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 35/205 (17%)
Query: 87 PHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLAR 146
P +TF + SP P+ N + SP + TP + N G +R +
Sbjct: 112 PRRETFV----LKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGS-VRALRATSGK 166
Query: 147 MPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVS 206
PS S + F +S A + ++R S ++ R G S
Sbjct: 167 RPSNMKRESPTCN--------LFPASKSPASSPLTR------STPPVRGRAGPSGRAAAS 212
Query: 207 IRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAIN 266
P+++ P+ S +P G S++ +P P SA+PRP+
Sbjct: 213 PPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP-----------SAIPRPA---- 257
Query: 267 GSNLPRSKIAQPVRSFLQPPKPLSS 291
S +P + + P PP LS+
Sbjct: 258 -SRMPLTSRSVPPGRGALPPDSLST 281
>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
Length = 326
Score = 32.7 bits (73), Expect = 0.41
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 166 SQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSS 225
S S + GI SC+PSP ++ P ++S T+ G+S
Sbjct: 251 SDSGSDKANSPAGGIPSTSSCLPSPS-------------TPVQSPHPQFPHISSTMNGTS 297
Query: 226 NMPLSNGLQLYSNTGIPTPNKAAASGIMGRSA 257
N P N ++N P K++ +G S+
Sbjct: 298 NSPSGNHQSSFAN----RPRKSSVNGSSATSS 325
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 32.7 bits (73), Expect = 0.41
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 69 LPPPQPRLP-RCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQ 127
L PQPR P + P Q P Q S + R SP Q QQ SPQ+ +P Q
Sbjct: 428 LGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSP----------QGQQPLSPQSGSPQQ 477
Query: 128 QPNRTNGDKLRR---SMPNLARMPSTTAISSNISSPVTVRNS 166
Q + + R S PN A P T ++S PV R++
Sbjct: 478 QRSPGSPQLSRASSGSSPNQASKPGAT-LASQPRPPVQGRST 518
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 32.7 bits (73), Expect = 0.41
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 69 LPPPQPRLP-RCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQ 127
L PQPR P + P Q P Q S + R SP Q QQ SPQ+ +P Q
Sbjct: 429 LGQPQPRPPPQGGPRQAQSPQPQRSGSPSQQRLSP----------QGQQPLSPQSGSPQQ 478
Query: 128 QPNRTNGDKLRR---SMPNLARMPSTTAISSNISSPVTVRNS 166
Q + + R S PN A P T ++S PV R++
Sbjct: 479 QRSPGSPQLSRASSGSSPNQASKPGAT-LASQPRPPVQGRST 519
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 32.7 bits (73), Expect = 0.41
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 71 PPQPRLPRCSPFQRGIPHSQTFSSIREC-----RRSPSSQYFPSNNYQQQQYYSPQAQTP 125
PP P C P Q +P Q S + C RRSP+S PS Q++ P Q+P
Sbjct: 352 PPARAAPPCPPCQSPVP--QRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSP 409
Query: 126 DQQ 128
Q
Sbjct: 410 SPQ 412
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 32.7 bits (73), Expect = 0.41
Identities = 70/297 (23%), Positives = 114/297 (38%), Gaps = 30/297 (10%)
Query: 20 ESLRQDYASTSASVSRHSSSVSLS--------SGKKGTCSDQEYD--QYSLEDEEEFDHL 69
+++ D +T++SVS +S+ S +K + +D+ +D + + EE+FD
Sbjct: 895 DNISTDDLNTTSSVSSYSNITVPSRKNTQLRTDSEKRSTTDETWDSPEELKKPEEDFDSH 954
Query: 70 PPPQPRLPRCS------PFQRGIPHSQTFSSIRECRRSPSSQY-FPSNNYQQQQYYSPQA 122
+ S P + G S + S RR S+Q PS
Sbjct: 955 GDAGGKWKTVSSGLPEDPEKAGQKASLSVSQTGSWRRGMSAQGGAPSRQKAGTSALKTPG 1014
Query: 123 QTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISS---PVTVRNSQSFDSSLHGAGNG 179
+T D + + L+ S +L R PS SS P + S + S +G
Sbjct: 1015 KTDDAKASEKGKAPLKGS--SLQRSPSDAGKSSGDEGKKPPSGIGRSTATSSFGFKKPSG 1072
Query: 180 ISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNT 239
+ S + ++G P S K+ A ++ GS N L + S T
Sbjct: 1073 VGSSAMITSSGATITSGSATLGKIPKSAAIGGKSNAGRKTSLDGSQNQD-DVVLHVSSKT 1131
Query: 240 -----GIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSS 291
+P P+K++ SGI GR R S + SN+ SK A S L+ P + S
Sbjct: 1132 TLQYRSLPRPSKSSTSGIPGRGG-HRSSTSSIDSNV-SSKSAGATTSKLREPTKIGS 1186
Score = 30.0 bits (66), Expect = 2.7
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 33/191 (17%)
Query: 106 YFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRN 165
+F + Y+QQQ++ Q +S+ L + + + S S T ++
Sbjct: 176 FFSLSRYKQQQHHQQQYY---------------QSLVELQQRVTHASPPSEASQAKTQQD 220
Query: 166 SQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSS 225
QS ++ + + S I + P +L P R P + S VQG+S
Sbjct: 221 MQSSLAARYATQSNHSGIATSQKKPTRL----------PGPSRVPAAGS---SSKVQGAS 267
Query: 226 NMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQP 285
N L+ Q +++ P A S P+ S +NG+ P S QP S +
Sbjct: 268 N--LNRRSQSFNSIDKNKPPNYANGNEKDSSKGPQSSSGVNGNVQPPSTAGQPPASAIPS 325
Query: 286 P---KPLSSLS 293
P KP S S
Sbjct: 326 PSASKPWRSKS 336
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,510,299
Number of Sequences: 37866
Number of extensions: 699616
Number of successful extensions: 2622
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 2488
Number of HSP's gapped (non-prelim): 235
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.