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Search of human proteins with 213688346
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens] 431 e-121
gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens] 388 e-108
gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens] 383 e-107
gi|4505183 CD99 antigen isoform a precursor [Homo sapiens] 49 4e-06
gi|171543879 CD99 antigen isoform b precursor [Homo sapiens] 48 6e-06
gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens] 48 6e-06
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 44 7e-05
gi|119395750 keratin 1 [Homo sapiens] 42 3e-04
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 42 4e-04
gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens] 41 6e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 41 7e-04
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 41 7e-04
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 41 7e-04
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 41 7e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 41 7e-04
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 40 0.001
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 40 0.001
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 40 0.001
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 40 0.001
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 40 0.001
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 40 0.002
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 40 0.002
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 40 0.002
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 39 0.004
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 39 0.004
gi|33356148 formin-like 1 [Homo sapiens] 39 0.004
gi|157743259 H6 family homeobox 3 [Homo sapiens] 37 0.008
gi|4809279 annexin VII isoform 2 [Homo sapiens] 37 0.008
gi|4502111 annexin VII isoform 1 [Homo sapiens] 37 0.008
gi|119395716 forkhead box C1 [Homo sapiens] 37 0.011
>gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
Length = 195
Score = 431 bits (1107), Expect = e-121
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
Query: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS
Sbjct: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
Query: 121 DNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL 180
DNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL
Sbjct: 121 DNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL 180
Query: 181 NNRRNCFRTHEPENV 195
NNRRNCFRTHEPENV
Sbjct: 181 NNRRNCFRTHEPENV 195
>gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
Length = 180
Score = 388 bits (996), Expect = e-108
Identities = 180/195 (92%), Positives = 180/195 (92%), Gaps = 15/195 (7%)
Query: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
Query: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS
Sbjct: 61 SGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNS 120
Query: 121 DNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL 180
DNTH GGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL
Sbjct: 121 DNTH---------------GGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKL 165
Query: 181 NNRRNCFRTHEPENV 195
NNRRNCFRTHEPENV
Sbjct: 166 NNRRNCFRTHEPENV 180
>gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens]
Length = 181
Score = 383 bits (984), Expect = e-107
Identities = 180/196 (91%), Positives = 180/196 (91%), Gaps = 16/196 (8%)
Query: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD
Sbjct: 1 MESWWGLPCLAFLCFLMHARGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPD 60
Query: 61 SGGNIYPRPKPRPQPQPGNSGNSGG-YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN 119
SGGNIYPRPKPRPQPQPGNSGNSGG YFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN
Sbjct: 61 SGGNIYPRPKPRPQPQPGNSGNSGGSYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGN 120
Query: 120 SDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK 179
SDNTH GGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK
Sbjct: 121 SDNTH---------------GGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFK 165
Query: 180 LNNRRNCFRTHEPENV 195
LNNRRNCFRTHEPENV
Sbjct: 166 LNNRRNCFRTHEPENV 181
>gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
Length = 185
Score = 48.5 bits (114), Expect = 4e-06
Identities = 53/171 (30%), Positives = 68/171 (39%), Gaps = 47/171 (27%)
Query: 25 FDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDS---GGNIYPRP----KPRPQPQP 77
FDL+DAL D E KKP + PK KP + D+ G N PRP KP P P P
Sbjct: 26 FDLSDALPDNE-NKKPTA--IPK-KPSAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNP 81
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGN 137
N +S G F+D D DG +GG G G S G S G
Sbjct: 82 -NHPSSSGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEG------------ 118
Query: 138 TYGGDHHSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 188
E ++ IV VVV + GA +S+ ++ CF+
Sbjct: 119 -------------EEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 156
>gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
Length = 169
Score = 47.8 bits (112), Expect = 6e-06
Identities = 47/165 (28%), Positives = 60/165 (36%), Gaps = 60/165 (36%)
Query: 24 DFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNS 83
DFDL DA+ D E N D P+P NP PKP P P P N +S
Sbjct: 36 DFDLGDAVVDGE-----NDD----------PRPPNP---------PKPMPNPNP-NHPSS 70
Query: 84 GGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDH 143
G F+D D DG +GG G G S G S G
Sbjct: 71 SGSFSDADLADG----------VSGGEGKGGSDGGGSHRKEG------------------ 102
Query: 144 HSTYGNPEGNMVAKIVSPIVSVVVVTLLGAAASYFKLNNRRNCFR 188
E ++ IV VVV + GA +S+ ++ CF+
Sbjct: 103 -------EEADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK 140
>gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens]
Length = 213
Score = 47.8 bits (112), Expect = 6e-06
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 35/194 (18%)
Query: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGG 63
L CLAF + RG DFD L DA+ + K+ + + K P +
Sbjct: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTTRA------- 61
Query: 64 NIYPRPKPRPQPQPGNSGNSGGYFNDV-DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDN 122
P GN + +D DRDDGR P GGGG+S D
Sbjct: 62 ---------PANTLGNDFDLADALDDRNDRDDGRRKPI--------AGGGGFSDKDLEDI 104
Query: 123 THGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVAK--IVSPIVSVVVVTLLGAAASYFKL 180
G G Y+ + G+ G + +P MVA+ ++ + S + + L+GA +SY
Sbjct: 105 VGG-GEYKPDKGKGDGRYGSND----DPGSGMVAEPGTIAGVASALAMALIGAVSSYISY 159
Query: 181 NNRRNCFRTHEPEN 194
++ CF + N
Sbjct: 160 QQKKFCFSIQQGLN 173
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 44.3 bits (103), Expect = 7e-05
Identities = 52/220 (23%), Positives = 80/220 (36%), Gaps = 38/220 (17%)
Query: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKP--NSDIYPKPKPPYYPQPENPDS 61
L CLAF + RG DFD L DA+ + K+P ++ +P P P
Sbjct: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTTRAPAKPPG 68
Query: 62 GG-------------------------NIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGR 96
G N RP + G F+ D D R
Sbjct: 69 SGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADALDDR 128
Query: 97 YPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVA 156
R P GGGG S + ++ G G Y+ + G+ G + +P MVA
Sbjct: 129 NDRDDGRRKPIAGGGG--FSDKDLEDIVGGGEYKPDKGKGDGRYGSND----DPGSGMVA 182
Query: 157 K--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 194
+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 183 EPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 222
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 42.0 bits (97), Expect = 3e-04
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 108 GGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGN 149
GGGGGG SYG+ +++G GG YG+ GG H +YG+
Sbjct: 543 GGGGGGRGSYGSGGSSYGSGG----GSYGSGGGGGGHGSYGS 580
Score = 33.9 bits (76), Expect = 0.090
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 107 AGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
+GGGGGG+ SYG+ ++ GGYR G + GG S+ G G
Sbjct: 568 SGGGGGGHGSYGSGSSS---GGYR-----GGSGGGGGGSSGGRGSG 605
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 107 AGGG--GGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGN 149
+GGG GGG YG+ +++G GG S G GG +YG+
Sbjct: 513 SGGGSRGGGGGGYGSGGSSYGSGGGSYGSGGG---GGGGRGSYGS 554
Score = 28.5 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 108 GGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYG 140
G GGGG+ +G+ G GG+ YG YG
Sbjct: 113 GIGGGGFGGFGSGGGGFGGGGFG-GGGYGGGYG 144
Score = 27.7 bits (60), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 107 AGGGGGGYSSYGNSDNTHGRGG 128
+GGGGG +SS G + G GG
Sbjct: 39 SGGGGGRFSSCGGGGGSFGAGG 60
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 21/123 (17%)
Query: 37 TKKPNSDIYPKPK--PPYYPQPENPDS-------GGNIYPRPK-------PRPQPQPG-N 79
+K +S+ +P+ PP YP P + G N P P P+ P P N
Sbjct: 305 SKPVHSNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHN 364
Query: 80 SGNSGGYFNDVDRDDGRYPPRPRPRPPA----GGGGGGYSSYGNSDNTHGRGGYRLNSRY 135
SG Y V P +PRPP+ GGGGGG G+S +++ G +
Sbjct: 365 SGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQN 424
Query: 136 GNT 138
G T
Sbjct: 425 GAT 427
>gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
Length = 190
Score = 41.2 bits (95), Expect = 6e-04
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 91 DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNP 150
DRDDGR P GGGG+S D G G Y+ + G+ G + +P
Sbjct: 58 DRDDGRRKPI--------AGGGGFSDKDLEDIVGG-GEYKPDKGKGDGRYGSND----DP 104
Query: 151 EGNMVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 194
MVA+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 105 GSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 150
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 40.8 bits (94), Expect = 7e-04
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 46 PKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRP 105
P+ P++ P +P GG + P P P P G GG P P P
Sbjct: 673 PRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGG------------NEPPPPPP 720
Query: 106 PAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNM 154
P G GG S G +GRGG G GG H + P G M
Sbjct: 721 PFRGARGGRSGGG---PPNGRGG-----PGGGMVGGGGHRPHEGPGGGM 761
Score = 35.4 bits (80), Expect = 0.031
Identities = 35/123 (28%), Positives = 41/123 (33%), Gaps = 25/123 (20%)
Query: 46 PKPKPPYYPQPENPDSGGNIYPRPKP----------RPQPQPGNS-GNSGGYFNDVDRDD 94
P P PP+ GG R P RP PG GNS G+
Sbjct: 716 PPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGH-------- 767
Query: 95 GRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLN-SRYGNTYGGDHHSTYGNPEGN 153
RP P G G G G + G GG+R + G GG H + P G
Sbjct: 768 -----RPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGG 822
Query: 154 MVA 156
M A
Sbjct: 823 MGA 825
Score = 31.6 bits (70), Expect = 0.45
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 62 GGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSD 121
GG++ RP PG+ G G +DV G P P G G G
Sbjct: 836 GGSMGGSGGHRPHEGPGHGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPG-------- 887
Query: 122 NTHGRGGYRLNSRYGNTYGGD 142
HG GG+R + G+++GGD
Sbjct: 888 --HGGGGHRGHDG-GHSHGGD 905
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 40.8 bits (94), Expect = 7e-04
Identities = 34/117 (29%), Positives = 40/117 (34%), Gaps = 18/117 (15%)
Query: 37 TKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPG-NSGNSGGYFNDVDRDDG 95
T P Y P+P Y P N Y P P P P P N G+ GGY +
Sbjct: 642 TSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGY------NPA 695
Query: 96 RY--PPRPRPRPPAGGGGGGYSSYGNSDNTHGR---------GGYRLNSRYGNTYGG 141
Y PP P + Y Y N + + G Y S GNT GG
Sbjct: 696 PYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNTQGG 752
Score = 33.5 bits (75), Expect = 0.12
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 60 DSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPR--PPAGGGGGGYSSY 117
+ G P P+ R + G G R + R PP GGG GG +Y
Sbjct: 496 EEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNY 555
Query: 118 GNSDNTHGRGGYRLNSRYGNTYGGDHHS 145
N G GGY N R+GN +++S
Sbjct: 556 RGGFNRSGGGGYSQN-RWGNNNRDNNNS 582
Score = 28.1 bits (61), Expect = 4.9
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 23/109 (21%)
Query: 38 KKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKP-------RPQPQPGNSGN-------- 82
+ P P+ PP P P+ P + P P + PG+S N
Sbjct: 590 RAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSS 649
Query: 83 --------SGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNT 123
S +N G P P P PP G Y Y + T
Sbjct: 650 YSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYT 698
Score = 27.7 bits (60), Expect = 6.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 109 GGGGGYSSYGNSDNTHG-RGGYRLNSRYGNTYGGDHHSTYGNPEG 152
GGGGG+ Y N G RGG++ +R G + GG ++ N G
Sbjct: 521 GGGGGFQRYENRGPPGGNRGGFQ--NRGGGSGGGGNYRGGFNRSG 563
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 40.8 bits (94), Expect = 7e-04
Identities = 34/117 (29%), Positives = 40/117 (34%), Gaps = 18/117 (15%)
Query: 37 TKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPG-NSGNSGGYFNDVDRDDG 95
T P Y P+P Y P N Y P P P P P N G+ GGY +
Sbjct: 742 TSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGY------NPA 795
Query: 96 RY--PPRPRPRPPAGGGGGGYSSYGNSDNTHGR---------GGYRLNSRYGNTYGG 141
Y PP P + Y Y N + + G Y S GNT GG
Sbjct: 796 PYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNYDYGSYSGNTQGG 852
Score = 33.5 bits (75), Expect = 0.12
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Query: 60 DSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPR--PPAGGGGGGYSSY 117
+ G P P+ R + G G R + R PP GGG GG +Y
Sbjct: 596 EEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGGNY 655
Query: 118 GNSDNTHGRGGYRLNSRYGNTYGGDHHS 145
N G GGY N R+GN +++S
Sbjct: 656 RGGFNRSGGGGYSQN-RWGNNNRDNNNS 682
Score = 28.1 bits (61), Expect = 4.9
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 23/109 (21%)
Query: 38 KKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKP-------RPQPQPGNSGN-------- 82
+ P P+ PP P P+ P + P P + PG+S N
Sbjct: 690 RAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSS 749
Query: 83 --------SGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNT 123
S +N G P P P PP G Y Y + T
Sbjct: 750 YSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYGGYNPAPYT 798
Score = 27.7 bits (60), Expect = 6.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 109 GGGGGYSSYGNSDNTHG-RGGYRLNSRYGNTYGGDHHSTYGNPEG 152
GGGGG+ Y N G RGG++ +R G + GG ++ N G
Sbjct: 621 GGGGGFQRYENRGPPGGNRGGFQ--NRGGGSGGGGNYRGGFNRSG 663
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 40.8 bits (94), Expect = 7e-04
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 76 QPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRY 135
Q G S GG +N G Y GGGGGGY++YG GG S Y
Sbjct: 206 QNGLSKGGGGGYNSY----GGY---------GGGGGGGYNAYGGGGGGSSYGG----SDY 248
Query: 136 GNTYGG-----DHHSTYG 148
GN +GG H S+YG
Sbjct: 249 GNGFGGFGSYSQHQSSYG 266
Score = 35.0 bits (79), Expect = 0.040
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 81 GNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNT 138
GN G F + Y P + GGGGGG S G S++ RGGY YG +
Sbjct: 249 GNGFGGFGSYSQHQSSYGPM---KSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGGS 303
Score = 29.3 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 107 AGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
+GGGGGG S GRGG R + GG ++S YG G
Sbjct: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNS-YGGYGG 225
Score = 27.7 bits (60), Expect = 6.5
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 108 GGGGGGYSSYG-------------NSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGN 153
GGGGG SS G N + G GGY YG GG +++ G G+
Sbjct: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGS 241
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 40.8 bits (94), Expect = 7e-04
Identities = 42/142 (29%), Positives = 46/142 (32%), Gaps = 33/142 (23%)
Query: 34 PEPTKKPNSDIY------PKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYF 87
P PT P + P P PP P P G P P P P PG G
Sbjct: 147 PGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG--- 203
Query: 88 NDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGG-DHHST 146
G+ P P+P GGG G S+ G RGG G GG HH
Sbjct: 204 -PGGPKGGKMPGGPKP-----GGGPGLSTPGGHPKPPHRGG-------GEPRGGRQHHPP 250
Query: 147 Y----------GNPEGNMVAKI 158
Y G P G KI
Sbjct: 251 YHQQHHQGPPPGGPGGRSEEKI 272
Score = 28.5 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQP 77
P P + P+ PP P P P P P+P Q QP
Sbjct: 62 PPPPHQQQQQPPPQQPPPQQPPPHQPP------PHPQPHQQQQP 99
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 40.4 bits (93), Expect = 0.001
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGG-GGGGYSSYGNSDNTHGR----GGYRLN 132
G SG GGY + RD G P +GG GGGY + S + G GGY+ +
Sbjct: 386 GGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQD 445
Query: 133 SRYGNTYGGDHHSTYGNPEG 152
+RY + G HH G G
Sbjct: 446 NRYQD---GGHHGDRGGGRG 462
Score = 33.9 bits (76), Expect = 0.090
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 34 PEPTKKPNSDIYPKPK-PPYYPQPENPDS---------GGNIYPRPKPRP-QPQPGNSGN 82
P+ +PN P P+ PP+ + + P GG + R Q G G
Sbjct: 303 PDRGGRPNEIEPPPPEMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGG 362
Query: 83 SGGYFNDVDRDDGRYPPRPRPRPPAG-GGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGG 141
GGY + R GR G GGGGGY G D+ GGY G GG
Sbjct: 363 RGGYDHG-GRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGG 421
Query: 142 DH 143
+
Sbjct: 422 GY 423
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 40.4 bits (93), Expect = 0.001
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRG----GYRLNS 133
G+ G G +N D G Y P G GGGG YGN +G G GY
Sbjct: 258 GSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGG-PGYGNQGGGYGGGGGYDGYNEGG 316
Query: 134 RY--GNTYGGDHHSTYGNPEG 152
+ GN GG +++ +GN G
Sbjct: 317 NFGGGNYGGGGNYNDFGNYSG 337
Score = 30.0 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 108 GGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
G GGG ++G N GRGGY GG +YG +G
Sbjct: 228 GNFGGGGGNFGRGGNFGGRGGY-------GGGGGGSRGSYGGGDG 265
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 108 GGGGGGYSSYGNSDNTHGRGGYRLNSR--YG------NTYGGDHHSTYGNP 150
GGGGG + GN G GG SR YG N +GGD + G P
Sbjct: 231 GGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP 281
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 78 GNSGNSGGYFND---VDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSR 134
G G+ GGY D D G Y R R GG GG S YG D + G GG R
Sbjct: 497 GYGGDRGGYGGDRGGYGGDRGGYGG-DRSRGGYGGDRGGGSGYGG-DRSGGYGG----DR 550
Query: 135 YGNTYGGDHHSTYGNPEGNMVAKI 158
G YGGD YG G K+
Sbjct: 551 SGGGYGGDRGGGYGGDRGGYGGKM 574
Score = 37.4 bits (85), Expect = 0.008
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHG----RGGYRLNS 133
G G+ GGY D R G R GG GG YG +G RGGY +
Sbjct: 475 GYGGDRGGYGGD--RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDR 532
Query: 134 RYGNTYGGDHHSTYG 148
G+ YGGD YG
Sbjct: 533 GGGSGYGGDRSGGYG 547
Score = 35.8 bits (81), Expect = 0.024
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 54 PQPENP-DSGGNIYPRP---KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGG 109
P+PE+ SGG+ R + + + G G+ GGY D GG
Sbjct: 379 PRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRS---------------GGG 423
Query: 110 GGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
GG SS G GGY R G YGGD YG G
Sbjct: 424 YGGDRSSGGGYSGDRSGGGYG-GDRSGGGYGGDRGGGYGGDRG 465
Score = 30.4 bits (67), Expect = 1.00
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYG-NSDNTHGRGGYRLNSRYG 136
G+ + GGY D R G Y +GGG GG G D G GG R YG
Sbjct: 426 GDRSSGGGYSGD--RSGGGYGG-----DRSGGGYGGDRGGGYGGDRGGGYGGDR-GGGYG 477
Query: 137 NT---YGGDHHSTYGNPEG 152
YGGD YG G
Sbjct: 478 GDRGGYGGDRGGGYGGDRG 496
Score = 27.7 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 110 GGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYG 148
G G YG + ++ G +S YG Y G +S+YG
Sbjct: 21 GNPGSQGYGQASQSYSGYGQTTDSSYGQNYSG--YSSYG 57
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/84 (38%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 78 GNSGNSGGYFND---VDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSR 134
G G+ GGY D D G Y R R GG GG S YG D + G GG R
Sbjct: 500 GYGGDRGGYGGDRGGYGGDRGGYGG-DRSRGGYGGDRGGGSGYGG-DRSGGYGG----DR 553
Query: 135 YGNTYGGDHHSTYGNPEGNMVAKI 158
G YGGD YG G K+
Sbjct: 554 SGGGYGGDRGGGYGGDRGGYGGKM 577
Score = 37.4 bits (85), Expect = 0.008
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHG----RGGYRLNS 133
G G+ GGY D R G R GG GG YG +G RGGY +
Sbjct: 478 GYGGDRGGYGGD--RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDR 535
Query: 134 RYGNTYGGDHHSTYG 148
G+ YGGD YG
Sbjct: 536 GGGSGYGGDRSGGYG 550
Score = 35.8 bits (81), Expect = 0.024
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 20/103 (19%)
Query: 54 PQPENP-DSGGNIYPRP---KPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGG 109
P+PE+ SGG+ R + + + G G+ GGY D GG
Sbjct: 382 PRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRS---------------GGG 426
Query: 110 GGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
GG SS G GGY R G YGGD YG G
Sbjct: 427 YGGDRSSGGGYSGDRSGGGYG-GDRSGGGYGGDRGGGYGGDRG 468
Score = 30.4 bits (67), Expect = 1.00
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYG-NSDNTHGRGGYRLNSRYG 136
G+ + GGY D R G Y +GGG GG G D G GG R YG
Sbjct: 429 GDRSSGGGYSGD--RSGGGYGG-----DRSGGGYGGDRGGGYGGDRGGGYGGDR-GGGYG 480
Query: 137 NT---YGGDHHSTYGNPEG 152
YGGD YG G
Sbjct: 481 GDRGGYGGDRGGGYGGDRG 499
Score = 28.1 bits (61), Expect = 4.9
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 110 GGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPE 151
G G YG + ++ G +S YG Y G +S+YG +
Sbjct: 21 GNPGSQGYGQASQSYSGYGQTTDSSYGQNYSG--YSSYGQSQ 60
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 52 YYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGG 111
Y Q ++ G Y + + + G+ G GG +R G Y PR R GGG
Sbjct: 194 YGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGR-----GGGR 248
Query: 112 GGYSSYGNSDNTHGRGGYRLNSRYG--NTYGGDHHSTYGNPEGNMV 155
GG G SD RGG+ +++G G H S N + N +
Sbjct: 249 GGRGGMGGSD----RGGF---NKFGGPRDQGSRHDSEQDNSDNNTI 287
Score = 32.0 bits (71), Expect = 0.34
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 101 PRPRPPAGGGGGGY--SSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
P+P P GG GG + +YG+ D GRGGY G GGD G G
Sbjct: 450 PKPDGPGGGPGGSHMGGNYGD-DRRGGRGGYDRGGYRGR--GGDRGGFRGGRGG 500
Score = 31.6 bits (70), Expect = 0.45
Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 42 SDIYPKPKPPYYPQPENPDSGGN--------IYPRPKPRPQPQPGNSGNSGGYFNDVDRD 93
S Y +P+ Y Q P GG Y P+ Q NS + GG +
Sbjct: 119 SSSYGQPQSGSYSQ--QPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGN 176
Query: 94 DGRYPPRPRPRPPAGGGGGGYSSYGNSDNT--HGRGGYRLNSRYGNTYGG 141
G+ + +GGG GG YGN D + G GGY R G GG
Sbjct: 177 YGQ----DQSSMSSGGGSGG--GYGNQDQSGGGGSGGYGQQDRGGRGRGG 220
Score = 30.4 bits (67), Expect = 1.00
Identities = 31/116 (26%), Positives = 39/116 (33%), Gaps = 16/116 (13%)
Query: 51 PYYPQPENPDSGGNIY---PRPKPRPQPQPGNSGNS---GGYFNDVDRDDGRYPPRP--- 101
P Y Q P S Y + QPQ G+ GG + PP+
Sbjct: 98 PGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQ 157
Query: 102 ----RPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGN--TYGGDHHSTYGNPE 151
GGGGGG +YG ++ GG YGN GG YG +
Sbjct: 158 QNQYNSSSGGGGGGGGGGNYGQDQSSMSSGG-GSGGGYGNQDQSGGGGSGGYGQQD 212
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 107 AGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNT--YGGDH--HSTYG 148
+G G YSSYG S NT G G YG+T YG S+YG
Sbjct: 48 SGYGQSSYSSYGQSQNT-GYGTQSTPQGYGSTGGYGSSQSSQSSYG 92
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 54 PQPENPDSGGNIYPRPKPRPQPQPGNSGNS-----GGYFNDVDRDDGRY-------PPRP 101
P P++PD+ PRP+ RP+P G+ S G F D R R+ P P
Sbjct: 438 PSPDSPDAAPEARPRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLP 497
Query: 102 RPRPPAGGG 110
P PAG G
Sbjct: 498 GPGQPAGPG 506
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 33 DPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQP--QPGNSGNSGGYFNDV 90
D P P P+P P Y QP P G YP+P +P P QPG Y
Sbjct: 12 DNYPPPNPGYPGGPQPPMPPYAQPPYP---GAPYPQPPFQPSPYGQPGYPHGPSPY---- 64
Query: 91 DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGY 129
G YP P P+ G G Y G + +GGY
Sbjct: 65 --PQGGYPQGPYPQ--GGYPQGPYPQEGYPQGPYPQGGY 99
Score = 31.2 bits (69), Expect = 0.58
Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 29/112 (25%)
Query: 41 NSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPR 100
+ D YP P P Y GG P+P P QP YP
Sbjct: 10 SGDNYPPPNPGY--------PGG---PQPPMPPYAQPP------------------YPGA 40
Query: 101 PRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
P P+PP G Y + + + +GGY Y + G P+G
Sbjct: 41 PYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYPQG 92
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 45 YPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSG--GYFNDVD 91
YP+ P P P NP ++P P PQ GN G Y+++ D
Sbjct: 99 YPQGPYPQSPFPPNPYGQPQVFPGQDP-DSPQHGNYQEEGPPSYYDNQD 146
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 33 DPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQP--QPGNSGNSGGYFNDV 90
D P P P+P P Y QP P G YP+P +P P QPG Y
Sbjct: 12 DNYPPPNPGYPGGPQPPMPPYAQPPYP---GAPYPQPPFQPSPYGQPGYPHGPSPY---- 64
Query: 91 DRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGY 129
G YP P P+ G G Y G + +GGY
Sbjct: 65 --PQGGYPQGPYPQ--GGYPQGPYPQEGYPQGPYPQGGY 99
Score = 31.2 bits (69), Expect = 0.58
Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 29/112 (25%)
Query: 41 NSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPR 100
+ D YP P P Y GG P+P P QP YP
Sbjct: 10 SGDNYPPPNPGY--------PGG---PQPPMPPYAQPP------------------YPGA 40
Query: 101 PRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEG 152
P P+PP G Y + + + +GGY Y + G P+G
Sbjct: 41 PYPQPPFQPSPYGQPGYPHGPSPYPQGGYPQGPYPQGGYPQGPYPQEGYPQG 92
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 45 YPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSG--GYFNDVD 91
YP+ P P P NP ++P P PQ GN G Y+++ D
Sbjct: 99 YPQGPYPQSPFPPNPYGQPQVFPGQDP-DSPQHGNYQEEGPPSYYDNQD 146
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 108 GGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYG--GDHHSTYGNPEG 152
GGG GG ++G N GRGG+ SR G YG GD ++ +GN G
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFG-GSRGGGGYGGSGDGYNGFGNDGG 252
Score = 33.5 bits (75), Expect = 0.12
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 57 ENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSS 116
+N GGN R G G SG +N D G P + G G G
Sbjct: 214 DNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQG 273
Query: 117 YGNSDNTHGRGGY--RLNSRYGNTYGGDHHSTYG 148
YGN + +G G N+ G +GG S +G
Sbjct: 274 YGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG 307
Score = 30.0 bits (66), Expect = 1.3
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRG-GYRLNSR-Y 135
GN GG+ R G Y GG G GY+ +GN G G GY SR Y
Sbjct: 220 GNFSGRGGFGGS--RGGGGY----------GGSGDGYNGFGNDGGYGGGGPGYSGGSRGY 267
Query: 136 GNTYGGDHHSTYGNPEG 152
G+ GG + G+ G
Sbjct: 268 GS--GGQGYGNQGSGYG 282
Score = 28.9 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 109 GGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYG 148
GGGG Y+ +GN +N G G +GG YG
Sbjct: 307 GGGGSYNDFGNYNNQSSNFG----PMKGGNFGGRSSGPYG 342
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 108 GGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYG--GDHHSTYGNPEGN 153
GGG GG ++G N GRGG+ SR G YG GD ++ +GN N
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFG-GSRGGGGYGGSGDGYNGFGNDGSN 253
Score = 30.0 bits (66), Expect = 1.3
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 20/83 (24%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGG--------Y 129
GN GG+ R G Y GG G GY+ +GN + G GG
Sbjct: 220 GNFSGRGGFGGS--RGGGGY----------GGSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
Query: 130 RLNSRYGNTYGGDHHSTYGNPEG 152
+S +G GG+ P G
Sbjct: 268 NQSSNFGPMKGGNFGGRSSGPYG 290
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 38.5 bits (88), Expect = 0.004
Identities = 29/94 (30%), Positives = 33/94 (35%), Gaps = 16/94 (17%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRD 93
P P + P S P P P+P P P P P P PG
Sbjct: 552 PSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGT-------------- 597
Query: 94 DGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGRG 127
DG PP P P PP GG + G D+ G G
Sbjct: 598 DGPVPPPPPPPPPPPGGPP--DALGRRDSELGPG 629
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 34 PEPTKKPN--SDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVD 91
PEP P D+ P P PP P P + G + P P P P P PG ++ G
Sbjct: 572 PEPPPAPPLPGDLPPPPPPP----PPPPGTDGPV-PPPPPPPPPPPGGPPDALG------ 620
Query: 92 RDDGRYPPRPRPRPP 106
R D P + + P
Sbjct: 621 RRDSELGPGVKAKKP 635
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 29 DALDDPEPTKKPNSDIYP--KPKPPYYPQPENPDSG----GNIYPRPKPRPQPQPGNSGN 82
DA PT P+ D+ P +P P P P P G P P+ P PG+
Sbjct: 515 DAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEP 574
Query: 83 SGGYFNDVDRDDGRYPPRPRPRPPAGGGGG 112
G PP P P PP G G
Sbjct: 575 P-----PAPPLPGDLPPPPPPPPPPPGTDG 599
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 37.4 bits (85), Expect = 0.008
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 54 PQPENPDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGRYPPRPRPRP 105
P+P PD+ G +P+P P P P + N ++ D R PP+P+P P
Sbjct: 2 PEP-GPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPP 52
Score = 34.7 bits (78), Expect = 0.053
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 31 LDDPEPTKKPNSDIYPKPKPPYYPQP-ENPDSGGNI----YPRPKPRPQPQP 77
+ +P P + P+P PP P P E+P S N+ + RP P+PQP P
Sbjct: 1 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPP 52
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 37.4 bits (85), Expect = 0.008
Identities = 37/128 (28%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPEN-PDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDR 92
P P P P YP P P GG YP+ P G GGY
Sbjct: 13 PFPGYPPAGQESSFPPSGQYPYPSGFPPMGGGAYPQVPSSGYPGAGGYPAPGGY-----P 67
Query: 93 DDGRYPPRPRPR--------PPAGG-----GGGGYSSYGNSDNTHGRGGYRLNSRYGNTY 139
G YP P+P PP G GG G+S Y + GG G
Sbjct: 68 APGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGYPQPPSQSYGGGPAQVPLPGGFP 127
Query: 140 GGDHHSTY 147
GG S Y
Sbjct: 128 GGQMPSQY 135
>gi|4502111 annexin VII isoform 1 [Homo sapiens]
Length = 466
Score = 37.4 bits (85), Expect = 0.008
Identities = 37/128 (28%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 34 PEPTKKPNSDIYPKPKPPYYPQPEN-PDSGGNIYPRPKPRPQPQPGNSGNSGGYFNDVDR 92
P P P P YP P P GG YP+ P G GGY
Sbjct: 13 PFPGYPPAGQESSFPPSGQYPYPSGFPPMGGGAYPQVPSSGYPGAGGYPAPGGY-----P 67
Query: 93 DDGRYPPRPRPR--------PPAGG-----GGGGYSSYGNSDNTHGRGGYRLNSRYGNTY 139
G YP P+P PP G GG G+S Y + GG G
Sbjct: 68 APGGYPGAPQPGGAPSYPGVPPGQGFGVPPGGAGFSGYPQPPSQSYGGGPAQVPLPGGFP 127
Query: 140 GGDHHSTY 147
GG S Y
Sbjct: 128 GGQMPSQY 135
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 37.0 bits (84), Expect = 0.011
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 20 RGQRDFDLADALDDPEPTKKPNSDIYPKPKPPYYPQPENPDSGGNIYPRPKPRPQPQPGN 79
R +R F DA+ D E +K + P P P P P+ P P+P P
Sbjct: 169 RRRRRFKKKDAVKDKE--EKDRLHLKEPPPPGRQPPPAPPEQADGNAPGPQPPPVR---- 222
Query: 80 SGNSGGYFNDVDRDDGRYPPRPRPRPPAGGGGGG 113
D+ ++G P P+P PA G G
Sbjct: 223 -------IQDIKTENGTCPSPPQPLSPAAALGSG 249
Score = 28.5 bits (62), Expect = 3.8
Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 78 GNSGNSGGYFNDVDRDDGRYPPRPRPRPPA------GGGGGGYSSYGNSDNTHGRGGYRL 131
G G +GG D D PP + GGGGGG G+ H RL
Sbjct: 414 GAPGGAGGSAVDDPLPDYSLPPVTSSSSSSLSHGGGGGGGGGGQEAGHHPAAHQG---RL 470
Query: 132 NSRYGNTYGGD 142
S Y N GGD
Sbjct: 471 TSWYLNQAGGD 481
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.140 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,885,115
Number of Sequences: 37866
Number of extensions: 912846
Number of successful extensions: 7621
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 4915
Number of HSP's gapped (non-prelim): 2326
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.