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Search of human proteins with 21362050
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21362050 coiled-coil domain containing 115 [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21362050 coiled-coil domain containing 115 [Homo sapiens] 357 3e-99
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens] 35 0.035
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 33 0.17
gi|7662108 Cdc42 guanine exchange factor 9 [Homo sapiens] 31 0.66
gi|62177129 Nedd4 binding protein 3 [Homo sapiens] 31 0.66
gi|116829964 KiSS-1 metastasis-suppressor [Homo sapiens] 30 1.1
gi|239742514 PREDICTED: similar to Putative POM121-like protein ... 30 1.1
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 30 1.1
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|169170949 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 30 1.5
gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens] 30 1.5
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 29 1.9
gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens] 29 1.9
gi|30795231 brain abundant, membrane attached signal protein 1 [... 29 2.5
gi|13384594 protein kinase C, gamma [Homo sapiens] 29 2.5
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 29 2.5
gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] 28 3.3
gi|18860857 menin isoform 1 [Homo sapiens] 28 4.3
gi|18860855 menin isoform 1 [Homo sapiens] 28 4.3
gi|18860851 menin isoform 1 [Homo sapiens] 28 4.3
gi|18860849 menin isoform 1 [Homo sapiens] 28 4.3
gi|18860853 menin isoform 1 [Homo sapiens] 28 4.3
gi|18860839 menin isoform 1 [Homo sapiens] 28 4.3
gi|18860847 menin isoform 2 [Homo sapiens] 28 4.3
gi|156616292 EF-hand domain (C-terminal) containing 1 [Homo sapi... 28 5.6
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 28 5.6
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens] 28 5.6
gi|145309324 FH2 domain containing 1 [Homo sapiens] 28 5.6
>gi|21362050 coiled-coil domain containing 115 [Homo sapiens]
Length = 180
Score = 357 bits (916), Expect = 3e-99
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MAALDLRAELDSLVLQLLGDLEELEGKRTVLNARVEEGWLSLAKARYAMGAKSVGPLQYA 60
MAALDLRAELDSLVLQLLGDLEELEGKRTVLNARVEEGWLSLAKARYAMGAKSVGPLQYA
Sbjct: 1 MAALDLRAELDSLVLQLLGDLEELEGKRTVLNARVEEGWLSLAKARYAMGAKSVGPLQYA 60
Query: 61 SHMEPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPESSEAPQ 120
SHMEPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPESSEAPQ
Sbjct: 61 SHMEPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPESSEAPQ 120
Query: 121 DPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRIDWGRSQLRGLQEKLKQLEPGAA 180
DPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRIDWGRSQLRGLQEKLKQLEPGAA
Sbjct: 121 DPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRIDWGRSQLRGLQEKLKQLEPGAA 180
>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
Length = 1834
Score = 35.0 bits (79), Expect = 0.035
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 79 QKFKVVRAGVHAPEE--VGPREAGLRRRKGPTKTPEPESSEAPQDPLNWFGILVPHS--- 133
Q +K RAGVHA +E GP G R KGP KT P + + P S
Sbjct: 1632 QTYKPSRAGVHAQQEATTGP---GAHRPKGPAKTKGPRHQRKHHES------ITPPSRSP 1682
Query: 134 LRQAQASFRDGLQLAADIASLQNRIDWGRSQL 165
++A D Q+ A S+ +D S L
Sbjct: 1683 TKEAPPGLNDDAQIPASQESVATSVDGSDSSL 1714
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 32.7 bits (73), Expect = 0.17
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 80 KFKVVRAGVHAPEEVGPREA-GLRRRKGPTKT-PEPESSEAPQDPL 123
K+K+ G H + VGP A G+ + P+ T P E+ EAP++PL
Sbjct: 3121 KYKMNLYGFHGGQRVGPVSAIGVTEEETPSPTEPSTEAPEAPEEPL 3166
>gi|7662108 Cdc42 guanine exchange factor 9 [Homo sapiens]
Length = 516
Score = 30.8 bits (68), Expect = 0.66
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 78 LQKFKVVRAGVHAPEEVG-------PREAGLRRRKGPTKT------PEPESSEAPQDPLN 124
L+ F+ R V E++G R+A + RK P + P S PQDPLN
Sbjct: 417 LRAFREERKMVQEDEKIGFEISENQKRQAAMTVRKVPKQKGVNSARSVPPSYPPPQDPLN 476
Query: 125 WFGILVPHSLRQAQ 138
LVP + Q+Q
Sbjct: 477 HGQYLVPDGIAQSQ 490
>gi|62177129 Nedd4 binding protein 3 [Homo sapiens]
Length = 544
Score = 30.8 bits (68), Expect = 0.66
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 22/165 (13%)
Query: 18 LGDLEELEGKRTVLNARVEEGWLSLAKARYAMGAKSVGPLQYASHMEPQVCLHASEAQEG 77
LGD + VL R + WL+ K Y V Q A E + L AQ
Sbjct: 273 LGDEDGSNPFTQVLEER-QRLWLAELKRLYVERLHEV--TQKAERSERNLQLQLFMAQ-- 327
Query: 78 LQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPESSEAPQDPLNWFGI-------LV 130
Q+ + +R + A + + P + P PE + S P++ W L+
Sbjct: 328 -QEQRRLRKELRAQQGLAPEP------RAPGTLPEADPSARPEEEARWEVCQKTAEISLL 380
Query: 131 PHSLRQAQASFRDGLQLAADIASLQNRIDWGRSQLRGLQEKLKQL 175
LR+AQA Q A+I SL+ ++ R+Q + +L +L
Sbjct: 381 KQQLREAQAEL---AQKLAEIFSLKTQLRGSRAQAQAQDAELVRL 422
>gi|116829964 KiSS-1 metastasis-suppressor [Homo sapiens]
Length = 138
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 104 RKGPTKTPEPESSEAPQDPLNWFGILVPHS 133
R+G + +P PESS +PQ P G+ PHS
Sbjct: 66 RRGTSLSPPPESSGSPQQP----GLSAPHS 91
>gi|239742514 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 896
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 55 GPLQYASHMEPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPE 114
GPL +S P H+ ++ + V + + AP R+AG+RR + T P
Sbjct: 552 GPLFSSSDPLPATSSHSRDSAQ-------VTSMIPAPFTAASRDAGMRRTRPGTSAPAAA 604
Query: 115 SSEAPQDPLN 124
++ P LN
Sbjct: 605 AAAPPPSTLN 614
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 30.0 bits (66), Expect = 1.1
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Query: 16 QLLGDLEELEGKRTVLNARVEEGWLSLAKARY-AMGAKSV-GPLQYASHMEPQVCLHASE 73
QL+ +E L+ + + L + + L+K G K V LQ E +V + + +
Sbjct: 10 QLVRQVEALKAENSHLRQELRDNSSHLSKLETETSGMKEVLKHLQGKLEQEARVLVSSGQ 69
Query: 74 AQEGLQKFKVVRAGVHA-------PEEVGPREAGLRRRKGPTKTPEPESSEAPQDPLNWF 126
E L++ K ++ + + P +GP A +TPE + F
Sbjct: 70 T-EVLEQLKALQMDITSLYNLKFQPPTLGPEPAA--------RTPEGSPVHGSGPSKDSF 120
Query: 127 GILVPHSLRQAQASFRDGLQLAADIASLQNRIDWGRSQLRGLQEKLKQL 175
G L ++R + R+ L +I + W SQL+GL ++L +L
Sbjct: 121 GELSRATIRLLEELDRERCFLLNEIEKEEKEKLWYYSQLQGLSKRLDEL 169
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 29.6 bits (65), Expect = 1.5
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 95 GPREAGLRR-RKGPTKTPEPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIAS 153
G EAG R R+G + +P + AP + +G L A S
Sbjct: 52 GALEAGTRGGREGHRRLRQPPTPSAPPG-----------------SPLHEGFLLIALFPS 94
Query: 154 LQNRIDWGRSQLRGLQEKLKQLEPGAA 180
QNR RS RGL +L+Q+ PGAA
Sbjct: 95 SQNR---HRSAGRGLAGRLQQVRPGAA 118
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 29.6 bits (65), Expect = 1.5
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 95 GPREAGLRR-RKGPTKTPEPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIAS 153
G EAG R R+G + +P + AP + +G L A S
Sbjct: 52 GALEAGTRGGREGHRRLRQPPTPSAPPG-----------------SPLHEGFLLIALFPS 94
Query: 154 LQNRIDWGRSQLRGLQEKLKQLEPGAA 180
QNR RS RGL +L+Q+ PGAA
Sbjct: 95 SQNR---HRSAGRGLAGRLQQVRPGAA 118
>gi|169170949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 29.6 bits (65), Expect = 1.5
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 95 GPREAGLRR-RKGPTKTPEPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIAS 153
G EAG R R+G + +P + AP + +G L A S
Sbjct: 52 GALEAGTRGGREGHRRLRQPPTPSAPPG-----------------SPLHEGFLLIALFPS 94
Query: 154 LQNRIDWGRSQLRGLQEKLKQLEPGAA 180
QNR RS RGL +L+Q+ PGAA
Sbjct: 95 SQNR---HRSAGRGLAGRLQQVRPGAA 118
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 29.6 bits (65), Expect = 1.5
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 95 GPREAGLRR-RKGPTKTPEPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIAS 153
G EAG R R+G + +P + AP + +G L A S
Sbjct: 52 GALEAGTRGGREGHRRLRQPPTPSAPPG-----------------SPLHEGFLLIALFPS 94
Query: 154 LQNRIDWGRSQLRGLQEKLKQLEPGAA 180
QNR RS RGL +L+Q+ PGAA
Sbjct: 95 SQNR---HRSAGRGLAGRLQQVRPGAA 118
>gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens]
Length = 363
Score = 29.6 bits (65), Expect = 1.5
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 3 ALDLRAELDSLVLQLLGDLEELEG-KRTVLNARVEEGWLSLAKARYAMGAKSVGP-LQYA 60
AL + + + QLLG +E+LEG ++VL+AR L + + Y+ K +G L A
Sbjct: 201 ALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARE----LGMEERPYSSRLKKIGELLDQA 256
Query: 61 SHMEPQVCLHASEAQEGLQKFKVVRAGVH 89
S +V SE G+ F+ V ++
Sbjct: 257 SVTREEV---VSELGNGIAAFESVPTAIY 282
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo
sapiens]
Length = 1258
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 90 APEEVGPREAGLRRRKGPTKTPEPESSEAPQDPLNWFG-----IL--VPHSL 134
AP PRE L R P PEPE AP P N F +L VPH L
Sbjct: 946 APPRAAPREEPLTPRLKPEGAPEPEGVAAP-PPKNSFNNPAYYVLEGVPHQL 996
>gi|120587029 signal peptide, CUB domain, EGF-like 1 [Homo sapiens]
Length = 988
Score = 29.3 bits (64), Expect = 1.9
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 95 GPREAGLRRRKGPTKTPEPESSEAPQDPLNW---FGI------LVPHSLRQAQASFRDGL 145
GP+ L++R G + P S+AP P+ F I L PHS +A+ + R L
Sbjct: 456 GPQGKALQKRNGTSSGLGPSCSDAPTTPIKQKARFKIRDAKCHLRPHSQARAKETARQPL 515
Query: 146 QLAADIASLQNRIDWGRSQLRGLQEKLKQL 175
+ + + D + + RG + K++
Sbjct: 516 LDHCHVTFVTLKCDSSKKRRRGRKSPSKEV 545
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 64 EPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPE--SSEAPQD 121
EPQ +EA+EG +K G A E+ G ++A + + P PE ++EA +
Sbjct: 41 EPQAAAEPAEAKEGKEKPDQDAEG-KAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAE 99
Query: 122 P 122
P
Sbjct: 100 P 100
>gi|13384594 protein kinase C, gamma [Homo sapiens]
Length = 697
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 96 PREAGLRRRKGPTKTPEPESSEAPQDPLNWFGILVPHSLRQAQASF 141
P E R R GP+ +P P S +P DP F P L + SF
Sbjct: 308 PLELYERVRMGPSSSPIPSPSPSPTDPKRCFFGASPGRLHISDFSF 353
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 28.9 bits (63), Expect = 2.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 95 GP-REAGLRRRKGPTKTPEPESSEAPQDPLNWFGILVPHS 133
GP RE G PT TP P +E P PL F + P S
Sbjct: 666 GPGRERGESPTTPPTPTPAPCPTEPPPSPLICFSLKTPDS 705
>gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
Length = 236
Score = 28.5 bits (62), Expect = 3.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 64 EPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKT-PEPESSEAPQDP 122
+P + + Q G + ++ V AP++ PR GP P P SS+AP+ P
Sbjct: 29 DPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSP 88
>gi|18860857 menin isoform 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 458 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 503
>gi|18860855 menin isoform 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 458 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 503
>gi|18860851 menin isoform 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 458 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 503
>gi|18860849 menin isoform 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 458 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 503
>gi|18860853 menin isoform 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 458 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 503
>gi|18860839 menin isoform 1 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 458 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 503
>gi|18860847 menin isoform 2 [Homo sapiens]
Length = 610
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 79 QKFKVVRAGVHAPEEVGP--REAGLRRRKGPTKTPEPESSEAPQDP 122
QK ++V A E P EA RR+GP + +PE P+ P
Sbjct: 453 QKVRIVSREAEAAEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKP 498
>gi|156616292 EF-hand domain (C-terminal) containing 1 [Homo
sapiens]
Length = 640
Score = 27.7 bits (60), Expect = 5.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 73 EAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPESSEAPQDP 122
+ E + K+ A ++PE + + +R+R+ P PE ES + +DP
Sbjct: 507 DTDEYVLKYMESNAAQYSPEALASIQNHVRKREAP--APEAESKQTEKDP 554
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 27.7 bits (60), Expect = 5.6
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 56 PLQYASHMEPQVCLHASEAQEGLQKFKVVRAGVHAPEEVGPREAGLRRRKGPTKTPEPES 115
P Q S PQV A Q G+++ ++ + P E + + GPT P P S
Sbjct: 3377 PGQPPSSKMPQVSQEAKGTQTGVEQPRLPAGPANRPPEPHTQVQRAQAETGPTSFPSPVS 3436
Query: 116 SEAPQD 121
D
Sbjct: 3437 VSMKPD 3442
>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
Length = 1193
Score = 27.7 bits (60), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 95 GPREAGLRRRKGPTKTPEPESSEAP 119
G RE+ + RRKGP P P E P
Sbjct: 29 GCRESKMPRRKGPQHPPPPSGPEEP 53
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 27.7 bits (60), Expect = 5.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 91 PEEVGPREAGLRRRKGPTKTPE--PESSEAP----QDPLNWFGILVPHSLRQAQAS 140
PE+ P+++ RR + P+ PES+E P + PL G SLR+ +S
Sbjct: 1075 PEDAAPKDSSTLRRASSARAPKKRPESAEGPSANTEAPLKARGAGERASLRRKDSS 1130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,977,235
Number of Sequences: 37866
Number of extensions: 313581
Number of successful extensions: 1199
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 51
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.