Search of human proteins with 113428063

Search of human proteins with 113428063

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro...   410   e-115
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa...   410   e-115
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ...   406   e-114
gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ...   404   e-113
gi|211059437 hypothetical protein LOC284428 [Homo sapiens]            404   e-113
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro...   377   e-105
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi...   111   5e-25
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...    79   2e-15
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]          79   3e-15
gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]       36   0.020
gi|148747864 JAW1-related protein isoform a [Homo sapiens]             33   0.13 
gi|26986534 Rho GTPase activating protein 12 [Homo sapiens]            32   0.29 
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         32   0.29 
gi|148613882 homeobox A4 [Homo sapiens]                                32   0.37 
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]     32   0.37 
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]        32   0.49 
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1...    32   0.49 

>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2 [Homo sapiens]
          Length = 204

 Score =  410 bits (1054), Expect = e-115
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARRAEM 204
           RVKKARERLAKALQADRLARRAEM
Sbjct: 181 RVKKARERLAKALQADRLARRAEM 204


>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
           sapiens]
          Length = 208

 Score =  410 bits (1054), Expect = e-115
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARRAEM 204
           RVKKARERLAKALQADRLARRAEM
Sbjct: 181 RVKKARERLAKALQADRLARRAEM 204


>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
           3-like [Homo sapiens]
          Length = 208

 Score =  406 bits (1043), Expect = e-114
 Identities = 202/204 (99%), Positives = 203/204 (99%)

Query: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARRAEM 204
           RVKKARERLAKALQADRLAR+AEM
Sbjct: 181 RVKKARERLAKALQADRLARQAEM 204


>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
           4-like [Homo sapiens]
          Length = 208

 Score =  404 bits (1037), Expect = e-113
 Identities = 201/204 (98%), Positives = 202/204 (99%)

Query: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARRAEM 204
           RVKKARERLAKALQADRLAR+AEM
Sbjct: 181 RVKKARERLAKALQADRLARQAEM 204


>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
          Length = 208

 Score =  404 bits (1037), Expect = e-113
 Identities = 201/204 (98%), Positives = 202/204 (99%)

Query: 1   MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
           MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1   MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60

Query: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61  VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120

Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
           GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180

Query: 181 RVKKARERLAKALQADRLARRAEM 204
           RVKKARERLAKALQADRLAR+AEM
Sbjct: 181 RVKKARERLAKALQADRLARQAEM 204


>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
           protein 3-like 2, partial [Homo sapiens]
          Length = 193

 Score =  377 bits (967), Expect = e-105
 Identities = 187/189 (98%), Positives = 188/189 (99%)

Query: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
           GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 1   GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60

Query: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
           KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 61  KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120

Query: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
           RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180

Query: 196 DRLARRAEM 204
           DRLARRAEM
Sbjct: 181 DRLARRAEM 189


>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
           sapiens]
          Length = 194

 Score =  111 bits (277), Expect = 5e-25
 Identities = 77/179 (43%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 28  QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
           Q+K+   + +   +    +++P+R++S  F+RPVTRI  HP N+VR  + +E LEKPQQ+
Sbjct: 6   QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65

Query: 88  CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRSPLEPTPGR 145
           C  RRLQ LQ  SS GE SS L L + L  L P   G SL  D A       P+      
Sbjct: 66  CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125

Query: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARRAE 203
             AV   P  G+G  +   L  Q LVT  DIR+Q  +VK  RERLA AL AD LA  AE
Sbjct: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 7/187 (3%)

Query: 22  MMPWALQK-KREIHMAKAHRRRAA---RSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKG 77
           MMP  LQK K+ +     ++ +      + LP+R T+ IF++PVT++ +HP N+V +   
Sbjct: 213 MMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV-KSDP 271

Query: 78  DEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRS 137
               E+P+QL   +RLQ L       +    + L   L  + PG+  E+L  A A  + +
Sbjct: 272 QRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHT 331

Query: 138 PLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQAD 196
              P  G+  A A    P +      PL    +VT  DIR+Q  RV++ R++L +AL AD
Sbjct: 332 SSAPITGQVSA-AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMAD 390

Query: 197 RLARRAE 203
            L+R A+
Sbjct: 391 ILSRAAD 397


>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
          Length = 291

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 3/190 (1%)

Query: 16  GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
           GK+  + M  + Q+ R     +   +    +ALP+R T+ IF++PVT+I +HP N+V + 
Sbjct: 67  GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125

Query: 76  KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
              + +++P+QL   ++L  L       E    + L   L  + PG   E+L  A A  +
Sbjct: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185

Query: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194
            +   P  G+  A A    PG+      PL    +VT  DIR+Q   V++ R+RL +AL 
Sbjct: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244

Query: 195 ADRLARRAEM 204
           AD LA   E+
Sbjct: 245 ADMLAHVEEL 254


>gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]
          Length = 315

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 68  PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
           P   VR RKGD+  ++        R+    P         P HL    S LA G  G  S
Sbjct: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276

Query: 127 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 159
            D  G  R     R+P++ TPGR PA    P     C
Sbjct: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313


>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
          Length = 903

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 120 PGTAGESLDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGCQLPPP--LSGQLVTP- 172
           PGT G S   A    +      P EP   + PA  G PT G+ C   P   L+G   +P 
Sbjct: 32  PGTRGHSQQEAAMPHIPEDEEPPGEPQAAQSPAGQGPPTAGVSCSPTPTIVLTGDATSPE 91

Query: 173 -ADIRRQARRVKKARERLA 190
               +  A RV    +RL+
Sbjct: 92  GETDKNLANRVHSPHKRLS 110


>gi|26986534 Rho GTPase activating protein 12 [Homo sapiens]
          Length = 846

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 97  QPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGR--FPAVAGGPT 154
           Q C S GEGS  +H +S         +G+ L  +  E++R+   P  GR   P  A    
Sbjct: 197 QSCDSAGEGSERIHQDS--------ESGDELSSSSTEQIRATTPPNQGRPDSPVYANLQE 248

Query: 155 PGMGCQLPPPLSG 167
             +     PPL G
Sbjct: 249 LKISQSALPPLPG 261


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 66  SHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE 125
           SH D        D HL  P  L +    Q   P      G++   L SV    AP  A +
Sbjct: 424 SHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASK 483

Query: 126 SLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQ 168
                 A  V SP+  +P     +  GP     C LPP   G+
Sbjct: 484 ------APVVPSPVLQSPSEGLGMGAGP----ACPLPPLAGGE 516


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 129 RAGAERVRSPLEPTPGRFPAVAGGPTPGMGC------QLPPPLSGQLVTPADIRR 177
           R GA   R P    P   PA A GP  G+        QLPPPL  + V PA  RR
Sbjct: 105 RGGASPGRPPQPEQP---PAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRR 156


>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
          Length = 271

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 25/142 (17%)

Query: 63  RIRSHPDNQVR-RRKGDEHLEKP-QQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
           R+ + P   +R +R GD  L     +L  YR     QP SS    +S     S  S  AP
Sbjct: 9   RVNAVPGTMLRPQRPGDLQLGASLYELVGYR-----QPPSSSSSSTSSTSSTSSSSTTAP 63

Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
                 L +A  E+  +P EP          GP PG G    P  S +     + ++Q R
Sbjct: 64  -----LLPKAAREKPEAPAEPP---------GPGPGSGAH--PGGSARPDAKEEQQQQLR 107

Query: 181 RVKKARERLAKALQADRLARRA 202
           R   +RER  K +Q   LA  A
Sbjct: 108 RKINSRER--KRMQDLNLAMDA 127


>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
          Length = 446

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 98  PCSSQGEGSSPLHLESVLSILAPGTAG-ESLDRAGAE---RVRSPLEPTPGRFPA 148
           PCS  G  SS  H+E   S   P  AG E L RAG         P E    RFPA
Sbjct: 12  PCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGVAVGGARGDPAEAADERFPA 66


>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 5 [Homo sapiens]
          Length = 2166

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1709 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1764

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1765 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1821

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1822 HGPPLSPAIRVQEV 1835


>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 4 [Homo sapiens]
          Length = 2173

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807


>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 3 [Homo sapiens]
          Length = 2179

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1722 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1777

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1778 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1834

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1835 HGPPLSPAIRVQEV 1848


>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 2 [Homo sapiens]
          Length = 2186

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1841

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1842 HGPPLSPAIRVQEV 1855


>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 1 [Homo sapiens]
          Length = 2221

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1841

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1842 HGPPLSPAIRVQEV 1855


>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 18 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807


>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 20 [Homo sapiens]
          Length = 2127

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1670 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1725

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1726 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1782

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1783 HGPPLSPAIRVQEV 1796


>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 19 [Homo sapiens]
          Length = 2135

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1678 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1733

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1734 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1790

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1791 HGPPLSPAIRVQEV 1804


>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 17 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807


>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 16 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807


>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 15 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807


>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 14 [Homo sapiens]
          Length = 2138

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807


>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoforom 13 [Homo sapiens]
          Length = 2144

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1687 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1742

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1743 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1799

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1800 HGPPLSPAIRVQEV 1813


>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
            subunit isoform 12 [Homo sapiens]
          Length = 2146

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 42   RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
            +A + A+       IFRR      +H    V   + D     PQ     R L   +  SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744

Query: 102  QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
            QG+  SP H + V S   P +   +   A    + +      GR P  AG P+      G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1801

Query: 157  MGCQLPPPLSGQLV 170
             G  L P +  Q V
Sbjct: 1802 HGPPLSPAIRVQEV 1815


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,215,358
Number of Sequences: 37866
Number of extensions: 505622
Number of successful extensions: 2390
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 2279
Number of HSP's gapped (non-prelim): 227
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.