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Name: CACNA1C Sequence: fasta or formatted (2221aa) NCBI GI: 193788720
Description:

calcium channel, voltage-dependent, L type, alpha 1C subunit isoform 1

Referenced in:

Calcium and TRP Cation Channels
Gene Families and the Nervous System

Other entries for this name:
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2158aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2146aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2146aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2138aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2135aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2127aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2186aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2179aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2173aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2166aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2157aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2155aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
alt prot [2144aa] calcium channel, voltage-dependent, L type, alpha 1C subunit isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7        171           3
 C cysteine            2.0         44           1
 D aspartate           4.1         92           2
 E glutamate           6.7        148           5
 F phenylalanine       5.9        130           2
 G glycine             6.1        135           4
 H histidine           1.9         42           2
 I isoleucine          7.0        155           4
 K lysine              4.6        103           2
 L leucine            10.2        227           5
 M methionine          2.4         54           2
 N asparagine          4.9        108           3
 P proline             5.0        111           2
 Q glutamine           3.7         82           2
 R arginine            5.5        122           2
 S serine              7.2        159           2
 T threonine           5.2        115           2
 V valine              6.1        136           3
 W tryptophan          1.3         28           1
 Y tyrosine            2.7         59           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, L type, alpha 1... 
CACNA1C               0.980   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.973   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.969   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.964   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.958   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.952   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.952   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.950   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.949   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.949   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.948   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.948   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.946   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.945   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.945   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.944   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.942   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.942   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.941   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.612   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.612   calcium channel, voltage-dependent, L type, alpha 1D ...
CACNA1D               0.611   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1S               0.512   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1F               0.492   calcium channel, voltage-dependent, L type, alpha 1F...
CACNA1A               0.165   calcium channel, alpha 1A subunit isoform 3 
CACNA1A               0.163   calcium channel, alpha 1A subunit isoform 4 
CACNA1B               0.163   calcium channel, voltage-dependent, N type, alpha 1B ...
CACNA1E               0.158   calcium channel, voltage-dependent, R type, alpha 1E...
SCN9A                 0.067   sodium channel, voltage-gated, type IX, alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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