Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MBD3L5 Sequence: fasta or formatted (208aa) NCBI GI: 211059437
Description:

hypothetical protein LOC284428

Referenced in:

DNA Methylation
Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         23           2
 C cysteine            1.9          4           1
 D aspartate           2.4          5           1
 E glutamate           5.3         11           1
 F phenylalanine       1.9          4           1
 G glycine             7.7         16           2
 H histidine           2.4          5           1
 I isoleucine          2.9          6           1
 K lysine              4.8         10           2
 L leucine            10.6         22           1
 M methionine          3.4          7           2
 N asparagine          1.0          2           1
 P proline            10.6         22           3
 Q glutamine           5.8         12           2
 R arginine           13.5         28           3
 S serine              6.2         13           2
 T threonine           3.8          8           1
 V valine              3.8          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284428 
MBD3L4                0.990   PREDICTED: methyl-CpG-binding domain protein 3-like ...
MBD3L3                0.982   PREDICTED: methyl-CpG-binding domain protein 3-like ...
MBD3L2                0.982   methyl-CpG binding domain protein 3-like 2 
LOC729458             0.962   PREDICTED: similar to methyl-CpG binding domain pro...
LOC100134199          0.904   PREDICTED: similar to methyl-CpG binding domain pro...
MBD3L1                0.221   methyl-CpG binding domain protein 3-like 
MBD3                  0.140   methyl-CpG binding domain protein 3 
MBD2                  0.137   methyl-CpG binding domain protein 2 isoform 1 
RPH3AL                0.025   rabphilin 3A-like (without C2 domains) 
MRVI1                 0.020   JAW1-related protein isoform a 
OLIG1                 0.018   oligodendrocyte transcription factor 1 
KIF26A                0.018   kinesin family member 26A 
MKI67                 0.018   antigen identified by monoclonal antibody Ki-67 iso...
MKI67                 0.018   antigen identified by monoclonal antibody Ki-67 iso...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press