Guide to the Human Genome
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Name: LOC100134199 Sequence: fasta or formatted (193aa) NCBI GI: 169217724
Description:

PREDICTED: similar to methyl-CpG binding domain protein 3-like 2, partial

Referenced in:

DNA Methylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         22           2
 C cysteine            2.1          4           1
 D aspartate           2.6          5           1
 E glutamate           5.2         10           1
 F phenylalanine       1.0          2           1
 G glycine             7.3         14           2
 H histidine           2.6          5           1
 I isoleucine          2.6          5           1
 K lysine              5.7         11           2
 L leucine            10.9         21           1
 M methionine          3.1          6           2
 N asparagine          1.0          2           1
 P proline             9.3         18           3
 Q glutamine           5.7         11           2
 R arginine           14.5         28           3
 S serine              6.7         13           2
 T threonine           3.6          7           1
 V valine              3.6          7           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to methyl-CpG binding domain pro... 
MBD3L2                0.994   methyl-CpG binding domain protein 3-like 2 
MBD3L5                0.983   hypothetical protein LOC284428 
MBD3L3                0.978   PREDICTED: methyl-CpG-binding domain protein 3-like ...
LOC729458             0.972   PREDICTED: similar to methyl-CpG binding domain pro...
MBD3L4                0.970   PREDICTED: methyl-CpG-binding domain protein 3-like ...
MBD3L1                0.227   methyl-CpG binding domain protein 3-like 
MBD3                  0.157   methyl-CpG binding domain protein 3 
MBD2                  0.149   methyl-CpG binding domain protein 2 isoform 1 
RPH3AL                0.030   rabphilin 3A-like (without C2 domains) 
MBD6                  0.025   methyl-CpG binding domain protein 6 
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.022   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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