Guide to the Human Genome
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Name: CAMK2D Sequence: fasta or formatted (492aa) NCBI GI: 212549753
Description:

calcium/calmodulin-dependent protein kinase II delta isoform 5

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [489aa] calcium/calmodulin-dependent protein kinase II delta isoform 4
alt prot [499aa] calcium/calmodulin-dependent protein kinase II delta isoform 3
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 1
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 1
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         38           2
 C cysteine            2.0         10           1
 D aspartate           5.7         28           2
 E glutamate           7.3         36           2
 F phenylalanine       3.9         19           1
 G glycine             5.9         29           2
 H histidine           3.9         19           1
 I isoleucine          6.5         32           2
 K lysine              7.3         36           2
 L leucine             8.3         41           3
 M methionine          2.2         11           2
 N asparagine          3.9         19           2
 P proline             4.9         24           2
 Q glutamine           3.9         19           2
 R arginine            5.1         25           2
 S serine              5.3         26           2
 T threonine           6.3         31           3
 V valine              5.5         27           2
 W tryptophan          1.4          7           1
 Y tyrosine            3.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium/calmodulin-dependent protein kinase II delt... 
CAMK2D                0.961   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.959   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.959   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.959   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.957   calcium/calmodulin-dependent protein kinase II delta...
CAMK2B                0.884   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.882   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.879   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.874   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.870   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.869   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.869   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.866   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.862   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.852   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2A                0.846   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2A                0.845   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2B                0.813   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.812   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.624   calcium/calmodulin-dependent protein kinase II beta ...
CASK                  0.265   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.265   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.265   calcium/calmodulin-dependent serine protein kinase ...
CAMK4                 0.229   calcium/calmodulin-dependent protein kinase IV 
CAMK1D                0.214   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1D                0.214   calcium/calmodulin-dependent protein kinase ID isofo...
CAMK1                 0.206   calcium/calmodulin-dependent protein kinase I 
CAMK1G                0.204   calcium/calmodulin-dependent protein kinase IG [Homo...
PNCK                  0.202   pregnancy upregulated non-ubiquitously expressed Ca...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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