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Name: CAMK2B Sequence: fasta or formatted (517aa) NCBI GI: 26051210
Description:

calcium/calmodulin-dependent protein kinase II beta isoform 4

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [666aa] calcium/calmodulin-dependent protein kinase II beta isoform 1
alt prot [542aa] calcium/calmodulin-dependent protein kinase II beta isoform 2
alt prot [518aa] calcium/calmodulin-dependent protein kinase II beta isoform 3
alt prot [503aa] calcium/calmodulin-dependent protein kinase II beta isoform 5
alt prot [492aa] calcium/calmodulin-dependent protein kinase II beta isoform 6
alt prot [479aa] calcium/calmodulin-dependent protein kinase II beta isoform 7
alt prot [449aa] calcium/calmodulin-dependent protein kinase II beta isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         49           3
 C cysteine            2.5         13           1
 D aspartate           5.0         26           1
 E glutamate           7.2         37           2
 F phenylalanine       3.5         18           1
 G glycine             5.8         30           2
 H histidine           4.1         21           1
 I isoleucine          6.0         31           2
 K lysine              7.0         36           2
 L leucine             8.5         44           3
 M methionine          1.4          7           2
 N asparagine          3.9         20           2
 P proline             4.6         24           2
 Q glutamine           4.4         23           2
 R arginine            4.8         25           2
 S serine              4.8         25           2
 T threonine           6.6         34           2
 V valine              6.0         31           2
 W tryptophan          1.4          7           1
 Y tyrosine            3.1         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium/calmodulin-dependent protein kinase II beta ... 
CAMK2B                0.995   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.986   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.955   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.901   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.874   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.867   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.862   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.858   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.855   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.851   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2D                0.837   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.815   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.810   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.810   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.810   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.810   calcium/calmodulin-dependent protein kinase II delta...
CAMK2A                0.789   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2A                0.784   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2B                0.719   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.644   calcium/calmodulin-dependent protein kinase II beta ...
CASK                  0.243   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.243   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.243   calcium/calmodulin-dependent serine protein kinase ...
CAMK1D                0.207   calcium/calmodulin-dependent protein kinase ID isofo...
CAMK4                 0.206   calcium/calmodulin-dependent protein kinase IV 
CAMK1D                0.205   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1G                0.197   calcium/calmodulin-dependent protein kinase IG [Homo...
DCLK2                 0.194   doublecortin-like kinase 2 isoform b 
DCLK2                 0.194   doublecortin-like kinase 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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