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Search of human proteins with 211064487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|211064487 hypothetical protein LOC84886 isoform 3 [Homo
sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|211064487 hypothetical protein LOC84886 isoform 3 [Homo sapiens] 390 e-109
gi|211063485 hypothetical protein LOC84886 isoform 2 [Homo sapiens] 390 e-109
gi|14249478 hypothetical protein LOC84886 isoform 1 [Homo sapiens] 390 e-109
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.001
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.001
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 40 0.001
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 40 0.001
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 40 0.001
gi|116268091 PHD finger protein 23 [Homo sapiens] 37 0.011
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 37 0.011
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 37 0.011
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 37 0.011
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 36 0.024
gi|12751497 hypothetical protein LOC65265 [Homo sapiens] 35 0.032
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 35 0.041
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 35 0.054
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 35 0.054
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 35 0.054
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 35 0.054
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 35 0.054
gi|212286156 zinc finger and BTB domain containing 42 [Homo sapi... 34 0.070
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 34 0.092
gi|153792074 proline rich 12 [Homo sapiens] 34 0.092
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 33 0.12
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 33 0.12
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens] 33 0.12
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 33 0.16
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 33 0.16
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 33 0.16
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.16
>gi|211064487 hypothetical protein LOC84886 isoform 3 [Homo sapiens]
Length = 197
Score = 390 bits (1003), Expect = e-109
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF 60
MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF
Sbjct: 1 MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF 60
Query: 61 WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ 120
WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ
Sbjct: 61 WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ 120
Query: 121 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV 180
EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV
Sbjct: 121 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV 180
Query: 181 SSSNVVLKTGFDFLDNW 197
SSSNVVLKTGFDFLDNW
Sbjct: 181 SSSNVVLKTGFDFLDNW 197
>gi|211063485 hypothetical protein LOC84886 isoform 2 [Homo sapiens]
Length = 289
Score = 390 bits (1003), Expect = e-109
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF 60
MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF
Sbjct: 93 MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF 152
Query: 61 WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ 120
WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ
Sbjct: 153 WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ 212
Query: 121 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV 180
EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV
Sbjct: 213 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV 272
Query: 181 SSSNVVLKTGFDFLDNW 197
SSSNVVLKTGFDFLDNW
Sbjct: 273 SSSNVVLKTGFDFLDNW 289
>gi|14249478 hypothetical protein LOC84886 isoform 1 [Homo sapiens]
Length = 327
Score = 390 bits (1003), Expect = e-109
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF 60
MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF
Sbjct: 131 MEFSISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASF 190
Query: 61 WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ 120
WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ
Sbjct: 191 WKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQ 250
Query: 121 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV 180
EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV
Sbjct: 251 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQV 310
Query: 181 SSSNVVLKTGFDFLDNW 197
SSSNVVLKTGFDFLDNW
Sbjct: 311 SSSNVVLKTGFDFLDNW 327
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 25/122 (20%)
Query: 67 RSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLP 126
R+ GE P SL S E G+ L P E KV+ S LP
Sbjct: 2522 RNEGEAPGFHVASL------SAEAGQIDLLP----------DERKVQATSLSADSFESLP 2565
Query: 127 NVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQVSSSNVV 186
N T+RE PVQAFS AAP+Q + K + ++RQ G SEP SSS ++
Sbjct: 2566 NTETDREPWDPVQAFS----HAAPAQ-DRKRRTGELRQFAGA----SEPFICHSSSSEII 2616
Query: 187 LK 188
K
Sbjct: 2617 EK 2618
>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 25/122 (20%)
Query: 67 RSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLP 126
R+ GE P SL S E G+ L P E KV+ S LP
Sbjct: 2522 RNEGEAPGFHVASL------SAEAGQIDLLP----------DERKVQATSLSADSFESLP 2565
Query: 127 NVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQVSSSNVV 186
N T+RE PVQAFS AAP+Q + K + ++RQ G SEP SSS ++
Sbjct: 2566 NTETDREPWDPVQAFS----HAAPAQ-DRKRRTGELRQFAGA----SEPFICHSSSSEII 2616
Query: 187 LK 188
K
Sbjct: 2617 EK 2618
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 11 QEPSNGTAASEPRPLSKASQGSQALKSSQGSRSS----SLDALG----PTRKEEEASFWK 62
+E S+ T+++ P + G +A + G R S+DA G P R +E+ W+
Sbjct: 2093 EEVSHITSSACPWQPTAEPHGPEASPVAGGERDLRRLYSVDAQGFLDKPGRADEQ---WR 2149
Query: 63 INAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKD----REAKVERPSTL 118
+AE GE EA+ + +K+ PPC EP +D R + E ST
Sbjct: 2150 PSAELGSGEPGEAKAWGPEAEPALGARRKKKMSPPCISVEPPAEDEGSARPSAAEGGSTT 2209
Query: 119 RQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGK 156
+ + P + R+ +P + + AA + G+
Sbjct: 2210 LRRRTPSCEATPHRDSLEPTEGSGAGGDPAAKGERWGQ 2247
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 40.4 bits (93), Expect = 0.001
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 11 QEPSNGTAASEPRPLSKASQGSQALKSSQGSRSS----SLDALG----PTRKEEEASFWK 62
+E S+ T+++ P + G +A + G R S+DA G P R +E+ W+
Sbjct: 2099 EEVSHITSSACPWQPTAEPHGPEASPVAGGERDLRRLYSVDAQGFLDKPGRADEQ---WR 2155
Query: 63 INAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKD----REAKVERPSTL 118
+AE GE EA+ + +K+ PPC EP +D R + E ST
Sbjct: 2156 PSAELGSGEPGEAKAWGPEAEPALGARRKKKMSPPCISVEPPAEDEGSARPSAAEGGSTT 2215
Query: 119 RQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGK 156
+ + P + R+ +P + + AA + G+
Sbjct: 2216 LRRRTPSCEATPHRDSLEPTEGSGAGGDPAAKGERWGQ 2253
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 40.0 bits (92), Expect = 0.001
Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 25/122 (20%)
Query: 67 RSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLP 126
R+ GE P SL S E G+ L P E KV+ S LP
Sbjct: 2522 RNEGEAPGFHVASL------SAEAGQIDLLP----------DERKVQATSLSADSFESLP 2565
Query: 127 NVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPKFAQVSSSNVV 186
N T+RE PVQAFS AAP+Q + K + ++RQ G SEP SSS ++
Sbjct: 2566 NTETDREPWDPVQAFS----HAAPAQ-DRKHRTGELRQFAGA----SEPFICHSSSSEII 2616
Query: 187 LK 188
K
Sbjct: 2617 EK 2618
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 37.0 bits (84), Expect = 0.011
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 5 ISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKIN 64
+S S+ S AA P PLS+ K + +R LGP A F +
Sbjct: 149 LSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKNRK-----LGPGAG---AGFGVLR 200
Query: 65 AER-SRGEGPE-AEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQ 122
R + G+G + + + ++K E+G+++ PP Q P P D +++ E +E+
Sbjct: 201 RPRPTPGDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAP-PSDTDSEEEEEEEEEEEE 259
Query: 123 R----------PLPNVSTERERPQPVQAFSSALHE--AAPSQLEGKLPSPDVRQDDGEDT 170
P+P + T E P+P + +H P+ E K DG D
Sbjct: 260 EEMATVVGGEAPVPVLPTPPEAPRP----PATVHPEGVPPADSESKEVGSTETSQDG-DA 314
Query: 171 LFSEPKFAQVSSSNVVLKTGFDFLD 195
SE + +V ++++++G D D
Sbjct: 315 SSSEGEM-RVMDEDIMVESGDDSWD 338
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.011
Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 17/180 (9%)
Query: 13 PSNGTAASEPRPLSKASQGS----QALKSSQGSRSSSLDALGPTRKEEEASFWKINAERS 68
P A E R +++ + S + K SQ +++ K E F N R
Sbjct: 146 PEIAAAIEEERASARSKRSSPKSRKGKKKSQENKNKGNKIQDIQLKTSEPDFTSANM-RD 204
Query: 69 RGEGPEAEFQSLTPSQIKS----MEKGEKVLPP-------CYRQEPAPKDR-EAKVERPS 116
EGP+ + + + S ++ E + +PP + +P P +R EA +
Sbjct: 205 SAEGPKEDEEKPSASALEQPATLQEVASQEVPPELATPAPAWEPQPEPDERLEAAACEVN 264
Query: 117 TLRQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPK 176
L +E+ E E E A E + P++R D+ + L EPK
Sbjct: 265 DLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPK 324
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 37.0 bits (84), Expect = 0.011
Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 17/180 (9%)
Query: 13 PSNGTAASEPRPLSKASQGS----QALKSSQGSRSSSLDALGPTRKEEEASFWKINAERS 68
P A E R +++ + S + K SQ +++ K E F N R
Sbjct: 146 PEIAAAIEEERASARSKRSSPKSRKGKKKSQENKNKGNKIQDIQLKTSEPDFTSANM-RD 204
Query: 69 RGEGPEAEFQSLTPSQIKS----MEKGEKVLPP-------CYRQEPAPKDR-EAKVERPS 116
EGP+ + + + S ++ E + +PP + +P P +R EA +
Sbjct: 205 SAEGPKEDEEKPSASALEQPATLQEVASQEVPPELATPAPAWEPQPEPDERLEAAACEVN 264
Query: 117 TLRQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPK 176
L +E+ E E E A E + P++R D+ + L EPK
Sbjct: 265 DLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPK 324
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 37.0 bits (84), Expect = 0.011
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 6 SALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINA 65
S S++E S + P PL + L+ R SS + P R+EE+ K +
Sbjct: 709 SPFSVEESS-----TTPCPLLTGGRPLPTLEVKPPDRPSS-KSKDPPREEEKEKKKKKHK 762
Query: 66 ERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPS---TLRQEQ 122
+RSR ++ S + S+ +S K + LP YR + R R + R+E+
Sbjct: 763 KRSRTRSRSPKYHSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREE 822
Query: 123 RPLP 126
R +P
Sbjct: 823 RSVP 826
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.8 bits (81), Expect = 0.024
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 18 AASEPRPLSKASQGS--------QALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSR 69
A P+P S + S Q K + R ++ P R+ +++S K RS
Sbjct: 164 APEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSS--KKKKHRSE 221
Query: 70 GEGPEAEFQSLTP-SQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNV 128
E + + +S TP S+ KS +K K PAPK R A + + +
Sbjct: 222 SESKKRKHRSPTPKSKRKSKDKKRK---RSRSTTPAPKSRRAH----RSTSADSASSSDT 274
Query: 129 STERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEP 175
S R R + ++AL G+ PSP + D FSEP
Sbjct: 275 SRSRSRSAAAKTHTTAL--------AGRSPSPASGRRGEGDAPFSEP 313
Score = 34.7 bits (78), Expect = 0.054
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 27/162 (16%)
Query: 10 IQEPSNGTAASEPRPL-----------SKASQGSQALKSSQGSRSSSLDALGPTRKEEEA 58
+ EP T A +P L S +S S + SS S SSS + G + + E
Sbjct: 2506 VGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2565
Query: 59 SFWKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTL 118
S + E + P S TP+ +++ +G PP EP P AK +R S+
Sbjct: 2566 SSLPVQPEVALKRVP-----SPTPAPKEAVREGR---PP----EPTP----AKRKRRSSS 2609
Query: 119 RQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSP 160
+ S+ + SS+ ++ S PSP
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSP 2651
Score = 31.6 bits (70), Expect = 0.46
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 13 PSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEG 72
P A + R S +S S + SS S SSS ++ S
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSS----------------SSSSSSSSSSS 2639
Query: 73 PEAEFQSLTPSQIKSMEKGEKVLP-PCYRQEPAPKDREAKVER-PSTLRQEQRPLPNVST 130
+ S +PS K G + LP P ++P P +R ++ R P ++ R L
Sbjct: 2640 SSSSSSSSSPSPAK---PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPV 2696
Query: 131 ERERPQP 137
ER RP P
Sbjct: 2697 ERRRPSP 2703
Score = 28.9 bits (63), Expect = 3.0
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 21 EPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEAEFQSL 80
+PR L ++ S+ K+ R + T + + S + R R G + + S
Sbjct: 1766 KPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGG--SGYHSR 1823
Query: 81 TPSQIKSME------KGEKVLPPCYRQE------PAPKDREAKVERPSTLRQEQRPLPNV 128
+P++ +S +G PP R+ PAP R P+T R+ + P +
Sbjct: 1824 SPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLI 1883
Query: 129 STERER 134
S R R
Sbjct: 1884 SRRRSR 1889
Score = 27.3 bits (59), Expect = 8.6
Identities = 35/139 (25%), Positives = 47/139 (33%), Gaps = 11/139 (7%)
Query: 19 ASEPRPLSKA---SQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEA 75
++ P P S+ S + + SS SRS S A T A A RGEG
Sbjct: 250 STTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAP 309
Query: 76 EFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAK-VERPSTLRQEQRPLPNVSTERER 134
+ T S + P E KD++ K RPS P P S+
Sbjct: 310 FSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPS-------PSPERSSTGPE 362
Query: 135 PQPVQAFSSALHEAAPSQL 153
P + H +P L
Sbjct: 363 PPAPTPLLAERHGGSPQPL 381
>gi|12751497 hypothetical protein LOC65265 [Homo sapiens]
Length = 229
Score = 35.4 bits (80), Expect = 0.032
Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 13 PSNGTAASEPRPLSKASQGS-------QALKSSQGSRSSSLDALGPTRKEEEASFWKINA 65
P A P P+S A S Q S+ SR+ L G T +++ + K
Sbjct: 20 PCASRGARLPGPVSSARNPSTVCLCPEQPTCSNADSRAHPLGDEGGTASKKQKNKKKTRN 79
Query: 66 ERSRGEGPEAEFQSLTPSQIKSMEKGE-----KVLPPCY--------RQEPAPKDREAKV 112
S G E + L P ++ + + + L C RQ+P PK +E +
Sbjct: 80 RASVANGGEKASEKLAPEEVPLSAEAQAQQLAQELAWCVEQLELGLKRQKPTPKQKEQAI 139
Query: 113 ERPSTLRQEQRPLP 126
TLR ++ PLP
Sbjct: 140 GAIRTLRSKRTPLP 153
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 35.0 bits (79), Expect = 0.041
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 55 EEEASFWKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVER 114
EEE + + E S E E Q TPS++ +E GE+ P E +++E E
Sbjct: 159 EEECEWNSEDEEFSSDE----EVQDNTPSEMPPLE-GEEEENPKENPEVKAEEKEVPKEI 213
Query: 115 PSTLRQEQ---RPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTL 171
P +E+ + +P V E + A S EA P E P V+ DD E
Sbjct: 214 PEVKDEEKEVPKEIPEVKAEEK------ADSKDCMEATPEVKEDPKEVPQVKADDKEQPK 267
Query: 172 FSEPK 176
+E K
Sbjct: 268 ATEAK 272
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 34.7 bits (78), Expect = 0.054
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 25 LSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEAEFQSLTPSQ 84
+S QG+ S+QG ++S LG RKEE + + S E EF SQ
Sbjct: 5483 ISTFLQGTTQAISAQGLETASFADLGGQRKEEPLAAKEALGHLSLAEVGTEEFLQKLTSQ 5542
Query: 85 IKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAFSSA 144
I M + K +AK++ P E P+ S R +P + +
Sbjct: 5543 ITEM--------------VSAKITQAKLQVPGGDSDEDSKTPSASPRHGRSRPSSSIQES 5588
Query: 145 LHEAAPSQLEGKL 157
E+ G++
Sbjct: 5589 SSESEDGDARGEI 5601
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 34.7 bits (78), Expect = 0.054
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 25 LSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEAEFQSLTPSQ 84
+S QG+ S+QG ++S LG RKEE + + S E EF SQ
Sbjct: 5483 ISTFLQGTTQAISAQGLETASFADLGGQRKEEPLAAKEALGHLSLAEVGTEEFLQKLTSQ 5542
Query: 85 IKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAFSSA 144
I M + K +AK++ P E P+ S R +P + +
Sbjct: 5543 ITEM--------------VSAKITQAKLQVPGGDSDEDSKTPSASPRHGRSRPSSSIQES 5588
Query: 145 LHEAAPSQLEGKL 157
E+ G++
Sbjct: 5589 SSESEDGDARGEI 5601
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 34.7 bits (78), Expect = 0.054
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 18 AASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEAEF 77
A ++P+ +KA+ A ++ QGSR SS D+ + +EEE K ++ P+
Sbjct: 443 ATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKK----PQKVA 498
Query: 78 QSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQE 121
PS+ S +KG+ + + ++ E K++ + R +
Sbjct: 499 GGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQ 542
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 34.7 bits (78), Expect = 0.054
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 30 QGSQALKSSQGSRSSSLDA----LGPTRKEEEASFWKI----NAERSRGEGPEAEFQSLT 81
Q Q K S S DA G R E+E + + + R + P S
Sbjct: 863 QAEQKKKKRHSSTGDSADAGPPAAGSARGEKEMEGVALKHGPSLPQERKQAPSTRRDSAE 922
Query: 82 PSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAF 141
PS +S+ PP Q PAP+ +A + P L Q+ P +++ P+
Sbjct: 923 PSSSRSVPVAHPGPPPASSQTPAPEHDKAANKMP--LAQKPALAPKPTSQTPPASPLSKL 980
Query: 142 SSALHEAAPSQLEGKLPSPDVRQDDGED 169
S S+ G+ P P+ + ED
Sbjct: 981 SRPYLVELLSRRAGR-PDPEPSEPSKED 1007
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.054
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 71 EGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVST 130
+GP+A L P + + + + LPP Q PA + RP QRP
Sbjct: 334 DGPKAPTACLPPPRPQRPAETKAHLPPPRPQRPAETNAHLPPPRP------QRPAETKVP 387
Query: 131 ERERPQPVQAFSSALHEAAPS------QLEGKLPSPDVRQDDGEDTLFSEP 175
E P+ VQ + + E S + EG+ V Q ED + S+P
Sbjct: 388 EEIPPEVVQEYVDIMEELLGSHPGDTGEPEGQREKGKVEQPQEEDGITSDP 438
>gi|212286156 zinc finger and BTB domain containing 42 [Homo
sapiens]
Length = 422
Score = 34.3 bits (77), Expect = 0.070
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 73 PEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDRE------AKVERPSTLRQEQRPLP 126
PE Q+L S +KS + E+V PPC Q P R+ K ER S QE+
Sbjct: 181 PEESDQALDLS-LKSGPRQERVHPPCVLQTPLCSQRQPGAQPLVKDERDSLSEQEESSSS 239
Query: 127 NVSTERERPQPVQAFSSALHEAAPSQLEGK 156
+P PV A + P L G+
Sbjct: 240 RSPHSPPKPPPVPAAKGLVVGLQPLPLSGE 269
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 33.9 bits (76), Expect = 0.092
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 9 SIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERS 68
+I+ P++ T A PLS+ + +A Q S A G + +E + E +
Sbjct: 530 AIEAPADETPAEAQSPLSEETSAEEAPAEVQ-----SPSAKGVSIEEAPLELQPPSGEET 584
Query: 69 RGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNV 128
E A Q L ++ + E +V PP + PA E P+ + Q P
Sbjct: 585 TAEEASAAIQLLAATEASAEEAPAEVQPPPAEEAPAEVQPPPAEEAPA---EVQPPPAEE 641
Query: 129 STERERPQPVQAFSSALH----EAAPSQLE 154
+ +P P + + + E AP++++
Sbjct: 642 APAEVQPPPAEEAPAEVQPPPAEEAPAEVQ 671
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.9 bits (76), Expect = 0.092
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 10/161 (6%)
Query: 12 EPSNGTAASEPRPLS-KASQGSQALKSSQGSRSSSLDALGPTRK---EEEASFWKINAER 67
E + GT +PL K S K+ +G +SS DA+ T + + KI A+
Sbjct: 1212 EEAGGTRLEPLKPLKIKLS----VPKAGEGLGTSSGDAISGTDHNSLDSSLTREKIEAKI 1267
Query: 68 SRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPN 127
E + E +S + K K PP Y+ P K PS + +P P
Sbjct: 1268 KEVEEKQPEMKSGFMASFLDFLKSGKRHPPLYQAGLTPPLSPPKSVPPSVPARGLQPQPP 1327
Query: 128 VSTERERPQPVQAF--SSALHEAAPSQLEGKLPSPDVRQDD 166
+ P P AF AL A L PSP R D+
Sbjct: 1328 ATPAVPHPPPSGAFGLGGALEAAESEGLGLGCPSPCKRLDE 1368
>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
sapiens]
Length = 1393
Score = 33.5 bits (75), Expect = 0.12
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)
Query: 17 TAASEPRPLS-KASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERS------- 68
T E PL+ + + S+A + G R ++ A K E +N + +
Sbjct: 922 TEHGERTPLANEITTPSRAEPTEHGERIANEKATPSPAKPTEHGETTVNEDTTPSSAEPT 981
Query: 69 -RGEGPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPN 127
GE ++ T S +S E GE+ + P+P + ER + ++ P P
Sbjct: 982 ENGERTPLANENTTTSPTESTEHGERTANE--KTTPSPAEPTEHGERTPSANEKTIPSPA 1039
Query: 128 VSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQDDGEDTLFSEPK 176
TE E E PS E PSP + GE T + K
Sbjct: 1040 KPTEHE-------------EMTPSANENTTPSPVKPTEHGEKTTLANEK 1075
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 33.5 bits (75), Expect = 0.12
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 13 PSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAE-RSRGE 71
PS T + L+K + + K + R L+ L RKEEE ++ E R R +
Sbjct: 336 PSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEE----RLEQEKRERKK 391
Query: 72 GPEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTE 131
E E + + K + K + REA+ +TL+ Q V ++
Sbjct: 392 QKEKERKERLKKEGKLLTKSQ---------------REARARAEATLKLLQAQGVEVPSK 436
Query: 132 RERPQPVQAFSSALHEAAPSQLEGK 156
P+ + + P QLE K
Sbjct: 437 DSLPKKRPIYEDKKRKKIPQQLESK 461
>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
Length = 1444
Score = 33.5 bits (75), Expect = 0.12
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 73 PEAEFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTER 132
P+ ++ + P + S GE + P R + P ++P+ ++ P S++
Sbjct: 1205 PKIQYTQI-PQPLPSQSSGENGVQPLERSQEGPSSTSGTTQKPA---KDDSPSSLESSKE 1260
Query: 133 ERPQ--PVQAFSSALHEAAPSQLEGKLPSPD 161
E+P+ P SS + AP EG SP+
Sbjct: 1261 EKPKQDPGAIKSSPVDATAPCMCEGPTLSPE 1291
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 33.1 bits (74), Expect = 0.16
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 106 KDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQD 165
++ + K+E T+RQ Q+P+ +S ++ PV S + PS +G+ DV +D
Sbjct: 1076 EEEKEKLEGDHTIRQSQQPMKPISPVKD---PVSPASQKMVIQGPSSPQGEAMVTDVLED 1132
Query: 166 --DGEDTLFSEPKFAQV---SSSNVVLKT 189
+G T P A + S +N+ ++T
Sbjct: 1133 QKEGRSTNKENPSKALIERPSQNNIGIQT 1161
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 33.1 bits (74), Expect = 0.16
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 106 KDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQD 165
++ + K+E T+RQ Q+P+ +S ++ PV S + PS +G+ DV +D
Sbjct: 1076 EEEKEKLEGDHTIRQSQQPMKPISPVKD---PVSPASQKMVIQGPSSPQGEAMVTDVLED 1132
Query: 166 --DGEDTLFSEPKFAQV---SSSNVVLKT 189
+G T P A + S +N+ ++T
Sbjct: 1133 QKEGRSTNKENPSKALIERPSQNNIGIQT 1161
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 33.1 bits (74), Expect = 0.16
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 106 KDREAKVERPSTLRQEQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEGKLPSPDVRQD 165
++ + K+E T+RQ Q+P+ +S ++ PV S + PS +G+ DV +D
Sbjct: 1071 EEEKEKLEGDHTIRQSQQPMKPISPVKD---PVSPASQKMVIQGPSSPQGEAMVTDVLED 1127
Query: 166 --DGEDTLFSEPKFAQV---SSSNVVLKT 189
+G T P A + S +N+ ++T
Sbjct: 1128 QKEGRSTNKENPSKALIERPSQNNIGIQT 1156
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.16
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 4 SISALSIQEPSNGTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKI 63
S S+ S S+ +++S S +S S + SS S SSS + T E+ +
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDD 2683
Query: 64 NAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPPCY---RQEPAPKDREAKVERPSTLRQ 120
A + GP A Q+ P+ K+ ++ K P + ++ PAP Q
Sbjct: 2684 EAAPAPTAGPSA--QAALPT--KATKQAGKARPSAHSPGKKTPAP--------------Q 2725
Query: 121 EQRPLPNVSTERERPQPVQAFSSALHEAAPSQLEG 155
Q P P + QP+Q + A ++ P + EG
Sbjct: 2726 PQAPPP------QPTQPLQPKAQAGAKSRPKKREG 2754
Score = 30.8 bits (68), Expect = 0.78
Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 28/138 (20%)
Query: 16 GTAASEPRPLSKASQGSQALKSSQGSRSSSLDALGPTRKEEEASFWKINAERSRGEGPEA 75
GTA SE +G + ++G R+++L+ PT + P A
Sbjct: 2318 GTAGSEEPGAKARGRGRKPSAKAKGDRAATLEEGNPTDEVPST--------------PLA 2363
Query: 76 EFQSLTPSQIKSMEKGEKVLPPCYRQEPAPKDREAKVERPSTLRQEQRPLPNVSTERERP 135
S TP KS P P D+ AK + + P P T P
Sbjct: 2364 LEPSSTPGSKKS--------------PPEPVDKRAKAPKARPAPPQPSPAPPAFTSCPAP 2409
Query: 136 QPVQAFSSALHEAAPSQL 153
+P + AP+ L
Sbjct: 2410 EPFAELPAPATSLAPAPL 2427
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.123 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,385,314
Number of Sequences: 37866
Number of extensions: 444272
Number of successful extensions: 1682
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 304
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.